Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 0.0e+00 2116.7 1094 100.0
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 0.0e+00 1832.0 1101 87.5
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 0.0e+00 1832.0 1101 87.5
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 0.0e+00 1816.6 1102 87.2
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 0.0e+00 1803.9 1096 86.7
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 0.0e+00 1748.8 1097 85.1
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 0.0e+00 1674.1 1106 80.0
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 0.0e+00 1487.2 1106 73.3
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 0.0e+00 1372.1 1240 62.7
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 0.0e+00 1347.8 1240 61.7
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 0.0e+00 1288.5 1374 56.3
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 0.0e+00 1204.1 1154 60.1
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 1.8e-268 929.9 1296 46.7
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 2.3e-133 481.1 1387 31.4
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 2.1e-131 474.6 1384 31.9
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 2.0e-129 468.0 1275 31.7
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 1.1e-122 445.7 1402 29.7
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 3.4e-121 440.7 1418 30.5
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 8.4e-120 436.0 1458 29.8
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.3e-117 428.7 1352 29.5
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 2.4e-114 417.9 1420 30.9
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 3.1e-114 417.5 1377 30.9
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 4.4e-113 413.7 1362 29.6
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 4.9e-112 410.2 1320 30.1
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 8.4e-112 409.5 1339 30.2
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 1.4e-111 408.7 1422 30.0
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 2.4e-111 407.9 1369 29.9
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 4.6e-110 403.7 1249 29.9
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 4.6e-110 403.7 1184 31.8
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 1.3e-109 402.1 1356 29.9
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 3.6e-107 394.0 1394 28.9
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 2.4e-103 381.3 1417 27.9
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 5.4e-103 380.2 1375 29.3
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 9.3e-103 379.4 1125 32.4
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 3.0e-101 374.4 1125 32.0
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 9.6e-100 369.4 1397 27.3
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 3.6e-99 367.5 1325 29.4
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 6.2e-99 366.7 1345 28.8
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.1e-98 365.9 1336 29.3
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 1.4e-98 365.5 1419 27.7
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 1.7e-96 358.6 1331 29.0
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 1.7e-96 358.6 1316 28.7
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 2.2e-96 358.2 1277 29.3
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 3.8e-96 357.5 1345 27.6
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 5.5e-95 353.6 1334 28.8
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 1.6e-94 352.1 1296 29.6
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 2.7e-94 351.3 1400 27.3
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 6.0e-94 350.1 1483 26.5
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 6.7e-93 346.7 1324 28.6
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.8e-91 341.3 1328 28.4
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 6.2e-91 340.1 1242 29.0
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 8.1e-91 339.7 1187 30.3
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 8.1e-91 339.7 1187 30.3
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 2.4e-90 338.2 1164 29.6
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 1.3e-88 332.4 1119 30.1
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 1.9e-87 328.6 1216 28.5
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 3.2e-87 327.8 1300 27.8
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 1.2e-86 325.9 1018 29.8
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 1.3e-85 322.4 1148 28.2
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 1.6e-83 315.5 1183 28.4
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 6.9e-82 310.1 1234 27.1
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 1.2e-81 309.3 1302 27.3
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 2.0e-81 308.5 1309 27.1
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 2.6e-81 308.1 1359 26.9
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 1.0e-80 306.2 1329 26.6
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 3.8e-80 304.3 1359 26.8
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 8.4e-80 303.1 1331 26.3
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 2.5e-79 301.6 1129 29.1
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 7.2e-79 300.1 1144 29.3
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 7.2e-79 300.1 1333 27.5
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 2.7e-78 298.1 1320 27.1
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 4.3e-76 290.8 1054 29.2
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 2.2e-72 278.5 1270 28.0
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 3.2e-71 274.6 1343 26.1
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 3.0e-69 268.1 1343 26.5
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 3.7e-67 261.2 427 36.8
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 6.9e-66 256.9 1264 25.9
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.0e-65 255.4 473 34.5
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 2.6e-65 255.0 473 34.5
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 5.9e-65 253.8 1093 26.3
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 6.5e-64 250.4 410 37.3
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 1.1e-63 249.6 1123 27.3
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 1.6e-62 245.7 1243 25.7
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 7.9e-62 243.4 1513 25.1
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 1.0e-61 243.0 1288 25.9
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 1.7e-59 235.7 1407 25.1
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 2.6e-57 228.4 1110 26.3
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 2.6e-57 228.4 351 39.3
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 6.5e-56 223.8 1134 25.9
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 3.2e-55 221.5 1349 24.0
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 3.2e-55 221.5 1362 22.8
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 1.3e-51 209.5 502 31.1
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 2.2e-51 208.8 414 33.3
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 4.8e-51 207.6 269 48.3
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.1e-50 204.9 1095 25.7
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 4.1e-50 204.5 489 32.3
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.2e-49 203.0 523 29.4
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 1.9e-47 195.7 409 32.3
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 1.2e-46 193.0 315 37.5
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 8.8e-45 186.8 1165 23.7
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 3.7e-43 181.4 1122 24.2
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 1.6e-41 176.0 285 36.1
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 2.9e-40 171.8 306 37.6
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 5.0e-40 171.0 1289 23.7
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 6.5e-40 170.6 614 26.4
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 8.5e-40 170.2 249 45.4
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.8e-37 162.5 293 40.3
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 2.3e-37 162.2 1258 25.0
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 5.2e-37 161.0 1298 23.2
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 1.5e-36 159.5 500 27.8
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 3.7e-35 154.8 277 36.5
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 1.1e-31 143.3 272 40.1
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.3e-31 141.7 348 29.6
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 4.7e-30 137.9 251 39.4
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 2.9e-27 128.6 151 47.0
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 6.4e-27 127.5 133 57.1
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 6.4e-27 127.5 133 57.1
A03p44260 Brassica napus HOM05D005171 ORTHO05D041371 5.6e-23 114.4 88 68.2
BraA03t13556Z Brassica rapa HOM05D005171 ORTHO05D041371 5.6e-23 114.4 88 68.2
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 5.6e-23 114.4 237 35.9
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 1.2e-22 113.2 245 38.0
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.4e-18 99.0 131 48.1
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 2.4e-18 99.0 126 42.1
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 5.4e-18 97.8 131 48.9
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 2.3e-16 92.4 143 37.8
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 4.7e-14 84.7 94 44.7
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 1.4e-13 83.2 144 34.7
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 1.8e-13 82.8 131 34.4
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 2.4e-10 72.4 121 33.1
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 4.1e-10 71.6 95 45.3
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 1.6e-09 69.7 217 31.8
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 4.6e-09 68.2 118 39.8
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 4.3e-07 61.6 71 47.9
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 7.3e-07 60.8 98 37.8
SalBow7G0566 Salvia bowleyana HOM05D005171 ORTHO05D006343 2.8e-06 58.9 115 39.1
Glyma.07G011650 Glycine max HOM05D005171 ORTHO05D006343 4.7e-06 58.2 87 34.5
MD09G1132400 Malus domestica HOM05D005171 ORTHO05D006343 4.7e-06 58.2 58 50.0
SEGI_11604 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 6.2e-06 57.8 103 30.1
CDE02G3322 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 8.1e-06 57.4 123 35.0


User provided reference genes

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