Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 1.0e-92 343.6 202 100.0
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 1.7e-87 326.2 202 86.1
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 1.7e-87 326.2 202 86.1
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 2.5e-86 322.4 202 85.1
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 3.2e-86 322.0 202 86.1
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 3.2e-86 322.0 202 86.1
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 3.1e-81 305.4 202 80.7
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 2.3e-79 299.3 203 91.1
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 5.5e-78 294.7 202 79.2
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 1.5e-75 286.6 202 77.7
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 4.7e-69 265.0 202 79.7
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 7.8e-64 247.7 200 70.0
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 1.3e-55 220.3 205 74.1
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 3.9e-47 192.2 204 57.8
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 4.3e-46 188.7 173 61.8
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 7.3e-46 188.0 155 76.1
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 1.6e-45 186.8 196 61.2
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 2.1e-45 186.4 214 58.4
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 2.8e-45 186.0 165 61.8
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 3.6e-45 185.7 155 63.9
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 6.2e-45 184.9 129 73.6
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 8.1e-45 184.5 164 61.0
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 1.1e-44 184.1 171 59.6
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 1.8e-44 183.3 113 78.8
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 1.8e-44 183.3 155 64.5
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 3.1e-44 182.6 118 77.1
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 4.0e-44 182.2 160 73.8
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 5.2e-44 181.8 117 76.9
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 6.8e-44 181.4 213 55.4
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 6.8e-44 181.4 213 55.4
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 6.8e-44 181.4 203 59.1
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 8.9e-44 181.0 215 58.6
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 8.9e-44 181.0 157 64.3
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 4.4e-43 178.7 204 54.9
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 4.4e-43 178.7 155 74.2
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 5.8e-43 178.3 115 74.8
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 5.8e-43 178.3 199 54.3
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 9.9e-43 177.6 213 52.6
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 1.7e-42 176.8 112 74.1
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 1.7e-42 176.8 110 80.9
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 2.2e-42 176.4 191 55.0
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 2.2e-42 176.4 118 75.4
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 2.9e-42 176.0 156 62.2
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 2.9e-42 176.0 156 62.2
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 2.9e-42 176.0 110 79.1
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 2.9e-42 176.0 118 72.9
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 3.8e-42 175.6 160 73.1
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 3.8e-42 175.6 109 78.0
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 4.9e-42 175.3 112 74.1
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 4.9e-42 175.3 215 55.8
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 8.4e-42 174.5 171 55.6
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 1.1e-41 174.1 212 59.4
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 1.4e-41 173.7 187 56.7
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 1.4e-41 173.7 187 62.6
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 2.4e-41 172.9 112 78.6
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 2.4e-41 172.9 111 74.8
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 3.2e-41 172.6 208 52.4
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 4.2e-41 172.2 213 58.7
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 4.2e-41 172.2 202 53.0
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 4.2e-41 172.2 155 63.2
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 5.4e-41 171.8 116 74.1
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 5.4e-41 171.8 198 50.0
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 9.3e-41 171.0 160 60.6
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 1.2e-40 170.6 118 72.9
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.2e-40 170.6 119 72.3
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 1.2e-40 170.6 155 61.9
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 2.1e-40 169.9 209 58.9
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 2.1e-40 169.9 108 77.8
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 2.7e-40 169.5 106 78.3
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 3.5e-40 169.1 118 73.7
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 6.0e-40 168.3 179 55.9
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 6.0e-40 168.3 107 74.8
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 6.0e-40 168.3 107 74.8
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 7.8e-40 167.9 177 54.8
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 7.8e-40 167.9 119 71.4
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 1.0e-39 167.5 110 74.5
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 1.7e-39 166.8 217 54.8
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 2.3e-39 166.4 112 72.3
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 2.3e-39 166.4 153 58.2
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 3.9e-39 165.6 119 70.6
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 8.7e-39 164.5 206 51.5
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 1.1e-38 164.1 182 52.2
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 1.1e-38 164.1 177 54.2
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 1.5e-38 163.7 108 72.2
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 4.3e-38 162.2 113 71.7
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 4.3e-38 162.2 190 51.6
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 4.3e-38 162.2 185 60.5
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 5.6e-38 161.8 112 70.5
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 7.3e-38 161.4 118 66.1
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 7.3e-38 161.4 152 57.9
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 9.6e-38 161.0 112 68.8
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 9.6e-38 161.0 145 62.1
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 2.8e-37 159.5 209 52.2
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 6.2e-37 158.3 152 55.9
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 8.1e-37 157.9 165 49.1
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 1.4e-36 157.1 112 71.4
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 1.4e-36 157.1 119 68.1
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 9.0e-36 154.5 197 51.3
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 1.5e-35 153.7 154 58.4
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 5.8e-35 151.8 173 52.0
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 7.6e-35 151.4 106 61.3
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 1.0e-31 141.0 113 65.5
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 2.5e-30 136.3 88 75.0
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 5.6e-30 135.2 151 51.7
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 3.6e-29 132.5 155 60.6
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 6.2e-29 131.7 119 61.3
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 6.9e-28 128.3 115 52.2
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 2.6e-27 126.3 115 60.0
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 1.4e-25 120.6 109 54.1
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 1.4e-25 120.6 101 52.5
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 2.7e-24 116.3 180 50.6
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 2.5e-17 93.2 148 41.2
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 9.3e-17 91.3 165 52.7
CBR_g51823 Chara braunii HOM05D006993 ORTHO05D008336 3.9e-15 85.9 72 58.3
THA.LOC104815380 Tarenaya hassleriana HOM05D006993 ORTHO05D008336 1.0e-10 71.2 153 56.9
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 8.7e-07 58.2 36 77.8
Ca_23582_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.1e-06 57.8 39 74.4
Gohir.D11G152300 Gossypium hirsutum HOM05D006993 ORTHO05D008336 4.3e-06 55.8 139 39.6


User provided reference genes

Program Settings