Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 0.0e+00 1137.5 600 100.0
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 0.0e+00 1116.7 600 96.2
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 0.0e+00 1116.7 600 96.2
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 0.0e+00 1094.0 602 95.5
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 0.0e+00 1079.7 600 94.2
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 0.0e+00 1078.9 601 95.0
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 0.0e+00 1078.5 603 95.4
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 0.0e+00 1077.4 600 95.5
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 8.2e-312 1073.2 601 94.2
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 8.2e-312 1073.2 601 94.2
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 8.2e-312 1073.2 601 94.2
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 3.1e-310 1067.8 601 93.2
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 1.2e-309 1065.8 601 92.7
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 5.9e-309 1063.5 604 93.2
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 1.0e-308 1062.8 600 92.8
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 3.3e-304 1047.7 603 91.4
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 2.6e-301 1038.1 605 88.8
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 2.6e-296 1021.5 602 88.5
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 6.9e-294 1013.4 551 93.1
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 1.7e-292 1008.8 607 87.0
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 2.9e-284 981.5 553 93.7
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 1.8e-273 945.7 607 80.4
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 5.9e-261 904.0 600 79.7
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 1.3e-260 902.9 600 78.8
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 6.6e-260 900.6 605 76.0
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 3.3e-259 898.3 600 79.3
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 4.3e-259 897.9 600 78.2
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 7.3e-259 897.1 604 76.8
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 9.5e-259 896.7 600 79.3
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 9.5e-259 896.7 599 78.1
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 1.6e-258 896.0 605 76.4
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 2.8e-258 895.2 600 77.0
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 6.1e-258 894.0 601 76.5
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.0e-257 893.3 600 77.7
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.8e-257 892.5 592 78.9
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 3.0e-257 891.7 600 78.5
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 5.2e-257 891.0 605 77.2
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.5e-256 889.4 601 76.2
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.5e-256 889.4 601 76.2
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 9.8e-256 886.7 600 76.2
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 2.2e-255 885.6 602 77.4
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 3.7e-255 884.8 600 76.3
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 6.4e-255 884.0 600 78.0
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 6.4e-255 884.0 598 77.8
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 1.4e-254 882.9 610 75.6
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.4e-254 882.9 606 75.6
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 1.8e-254 882.5 605 76.2
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 1.8e-254 882.5 598 77.4
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 4.1e-254 881.3 601 75.7
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 5.4e-254 880.9 601 76.9
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.1e-251 873.2 600 76.2
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 4.3e-251 871.3 600 74.8
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 5.6e-251 870.9 601 77.5
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 1.6e-250 869.4 605 75.5
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 8.0e-250 867.1 604 74.8
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 1.1e-249 866.7 604 74.7
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.1e-249 866.7 604 74.2
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.3e-249 865.5 604 74.5
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.3e-249 865.5 602 74.4
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 4.0e-249 864.8 599 76.0
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 5.2e-249 864.4 603 74.8
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 2.6e-248 862.1 606 74.9
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 5.8e-248 860.9 616 74.0
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 7.5e-248 860.5 600 76.7
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 6.4e-247 857.4 612 70.9
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.4e-246 856.3 612 70.9
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.9e-246 855.9 599 75.6
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.9e-246 855.9 599 75.6
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.2e-246 855.1 601 74.0
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 5.4e-246 854.4 599 73.6
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 2.0e-245 852.4 605 74.7
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 7.8e-245 850.5 599 74.0
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 3.9e-244 848.2 599 73.5
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 5.0e-244 847.8 599 74.0
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.5e-243 846.3 600 73.2
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 3.3e-243 845.1 599 73.5
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 5.6e-243 844.3 599 73.0
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 7.3e-243 844.0 599 73.5
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 9.5e-243 843.6 599 72.8
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 9.5e-243 843.6 599 73.3
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 4.7e-242 841.3 602 72.8
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 1.2e-240 836.6 605 74.4
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 7.5e-240 833.9 599 73.1
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 7.5e-240 833.9 600 74.7
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.1e-238 830.1 601 72.9
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.6e-237 826.2 600 72.3
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 2.7e-237 825.5 598 71.6
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 1.7e-236 822.8 599 72.3
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 2.3e-236 822.4 599 73.1
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 3.0e-236 822.0 610 71.1
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 3.9e-236 821.6 616 72.1
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 3.9e-236 821.6 600 73.0
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.1e-235 820.1 593 72.5
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.1e-235 820.1 616 70.9
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.6e-234 816.2 599 72.8
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 2.1e-234 815.8 599 72.3
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 3.1e-233 812.0 599 72.3
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 4.6e-229 798.1 599 71.5
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 6.0e-229 797.7 600 68.8
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 3.0e-228 795.4 605 69.9
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 1.9e-227 792.7 604 70.2
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.4e-225 785.8 497 87.1
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 3.1e-225 785.4 601 70.2
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 4.0e-225 785.0 599 71.3
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 4.0e-225 785.0 601 69.6
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 5.2e-225 784.6 605 68.6
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 4.2e-222 775.0 600 66.5
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 7.1e-222 774.2 601 69.4
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 3.0e-220 768.8 610 69.5
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 4.3e-219 765.0 645 65.6
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.6e-218 763.1 611 68.6
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 9.0e-217 757.3 603 67.3
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 9.0e-217 757.3 611 67.9
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 2.1e-210 736.1 620 64.0
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.4e-209 733.4 601 67.1
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 7.6e-208 727.6 526 72.4
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 8.4e-207 724.2 599 67.4
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 7.9e-205 717.6 600 65.3
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 1.6e-202 709.9 600 65.7
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.2e-197 693.7 574 64.1
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.7e-196 688.0 474 75.3
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.5e-171 607.1 600 57.7
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 5.2e-156 555.4 604 53.0
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 8.8e-156 554.7 521 61.6
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 1.1e-153 547.7 606 51.2
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 2.3e-143 513.5 607 52.1
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 8.6e-135 485.0 620 44.5
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 7.5e-131 471.9 600 50.5
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 1.5e-126 457.6 592 46.3
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.0e-87 328.6 209 76.6
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.1e-85 320.9 243 65.8
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 2.2e-82 310.8 326 53.1
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 7.7e-75 285.8 613 34.3
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.4e-62 243.4 272 52.9
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.7e-61 241.5 240 62.9
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 7.0e-60 236.1 600 30.5
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 6.5e-50 203.0 147 68.7
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.1e-48 198.0 151 70.2
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 6.6e-34 149.8 79 93.7
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 5.5e-33 146.7 79 92.4
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.2e-32 145.6 624 24.8
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.0e-31 141.0 201 43.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 1.2e-30 139.0 98 65.3
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.6e-19 102.1 72 66.7
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 1.1e-15 89.4 114 43.0
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 1.5e-14 85.5 216 43.1
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 3.2e-12 77.8 90 46.7
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.9e-10 70.9 59 61.0


User provided reference genes

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