Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 3.7e-123 444.9 225 100.0
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 2.5e-87 325.9 191 88.0
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 5.6e-87 324.7 191 87.4
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 3.6e-86 322.0 191 87.4
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 1.4e-85 320.1 192 87.0
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 3.1e-85 318.9 192 86.5
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 3.1e-77 292.4 191 78.0
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 2.3e-72 276.2 191 76.4
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 2.1e-70 269.6 191 74.3
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 2.0e-68 263.1 189 73.0
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 1.3e-67 260.4 192 70.8
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 2.4e-66 256.1 189 70.9
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 1.7e-59 233.4 195 62.6
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 6.4e-59 231.5 195 63.1
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 2.9e-51 206.1 177 61.6
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 1.4e-50 203.8 189 59.3
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 1.4e-50 203.8 189 59.3
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 1.9e-50 203.4 189 59.3
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 2.4e-50 203.0 187 59.4
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 7.1e-50 201.4 189 58.7
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 2.7e-49 199.5 189 58.7
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 6.9e-45 184.9 164 57.9
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 5.8e-44 181.8 173 59.0
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 3.2e-42 176.0 170 54.1
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 7.1e-42 174.9 169 56.2
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 2.7e-41 172.9 163 55.8
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 3.5e-41 172.6 176 54.0
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 6.0e-41 171.8 162 56.2
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 1.3e-40 170.6 165 55.2
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 1.3e-40 170.6 169 54.4
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 1.8e-40 170.2 175 52.6
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 5.1e-40 168.7 174 53.4
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 6.7e-40 168.3 168 54.2
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 1.1e-39 167.5 177 50.8
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 3.3e-39 166.0 199 47.2
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 3.3e-39 166.0 145 57.2
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 5.7e-39 165.2 173 53.2
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 5.7e-39 165.2 169 53.3
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 7.4e-39 164.9 191 50.3
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 7.4e-39 164.9 169 53.3
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 7.4e-39 164.9 177 52.0
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 9.6e-39 164.5 188 48.4
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 9.6e-39 164.5 184 51.1
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 9.6e-39 164.5 177 50.3
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 9.6e-39 164.5 166 53.6
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 2.8e-38 162.9 169 52.7
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 3.7e-38 162.5 172 51.7
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 4.8e-38 162.2 162 54.3
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 4.8e-38 162.2 163 51.5
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 8.2e-38 161.4 212 43.9
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 1.1e-37 161.0 170 50.0
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.1e-37 161.0 168 53.6
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 1.1e-37 161.0 203 45.8
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 1.4e-37 160.6 168 54.2
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 3.1e-37 159.5 171 52.6
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 3.1e-37 159.5 176 48.9
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 3.1e-37 159.5 160 54.4
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 3.1e-37 159.5 167 53.9
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 3.1e-37 159.5 166 55.4
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 5.3e-37 158.7 172 51.7
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 5.3e-37 158.7 165 50.3
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 5.3e-37 158.7 165 55.8
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 5.3e-37 158.7 167 53.3
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 6.9e-37 158.3 202 44.1
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.5e-36 157.1 170 52.9
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 2.0e-36 156.8 174 48.3
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 3.4e-36 156.0 176 48.9
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 3.4e-36 156.0 194 47.4
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 7.6e-36 154.8 171 50.3
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 2.2e-35 153.3 165 51.5
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 2.9e-35 152.9 176 51.1
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.1e-34 151.0 220 40.0
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 1.1e-34 151.0 175 46.3
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 1.4e-34 150.6 164 52.4
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 1.9e-34 150.2 182 45.6
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 2.5e-34 149.8 182 45.1
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 2.5e-34 149.8 166 48.8
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 3.2e-34 149.4 176 45.5
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 4.2e-34 149.1 176 45.5
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 4.2e-34 149.1 174 46.0
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 5.5e-34 148.7 193 47.2
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 7.2e-34 148.3 220 39.5
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 9.3e-34 147.9 154 53.9
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 1.2e-33 147.5 173 45.1
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 2.1e-33 146.7 164 51.2
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 3.5e-33 146.0 167 46.1
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 3.5e-33 146.0 186 45.2
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 4.6e-33 145.6 164 49.4
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 6.1e-33 145.2 163 49.7
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 7.9e-33 144.8 176 46.0
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 7.9e-33 144.8 178 46.1
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 1.8e-32 143.7 160 46.2
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 6.7e-32 141.7 187 44.4
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 1.5e-31 140.6 164 47.0
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 1.5e-31 140.6 188 43.6
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 1.9e-31 140.2 167 46.7
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 1.9e-31 140.2 224 40.2
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 4.3e-31 139.0 157 48.4
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 5.7e-31 138.7 179 44.7
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 3.7e-30 136.0 154 45.5
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 2.4e-29 133.3 157 47.1
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 4.1e-29 132.5 156 44.9
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 2.6e-28 129.8 160 45.0
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 3.8e-27 125.9 164 43.3
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 7.2e-26 121.7 157 43.3
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 4.1e-21 105.9 119 50.4
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 5.0e-19 99.0 126 42.9
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 5.0e-19 99.0 95 55.8
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 9.4e-18 94.7 175 34.9
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 7.9e-17 91.7 167 35.3
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 6.7e-16 88.6 82 58.5
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 2.0e-12 77.0 162 32.1
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 2.5e-10 70.1 161 28.6
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.6e-09 67.4 125 37.6
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 1.8e-08 63.9 94 38.3


User provided reference genes

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