Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26692 Brassica carinata HOM05D011699 ORTHO05D008062 1.3e-143 513.1 268 100.0
BcaC06g35749 Brassica carinata HOM05D011699 ORTHO05D008062 3.9e-119 431.8 251 90.0
BolC7t41607H Brassica oleracea HOM05D011699 ORTHO05D008062 2.1e-117 426.0 256 87.9
A07p07520 Brassica napus HOM05D011699 ORTHO05D008062 1.4e-116 423.3 264 86.4
BraA07t28543Z Brassica rapa HOM05D011699 ORTHO05D008062 1.4e-116 423.3 264 86.4
C07p11290 Brassica napus HOM05D011699 ORTHO05D008062 3.4e-115 418.7 264 84.8
Sp3g22490 Schrenkiella parvula HOM05D011699 ORTHO05D008062 7.3e-86 321.2 256 71.5
Carub.0003s2514 Capsella rubella HOM05D011699 ORTHO05D008062 3.5e-80 302.4 259 67.6
AL3G40480 Arabidopsis lyrata HOM05D011699 ORTHO05D008062 2.4e-76 289.7 267 65.5
AT3G24750 Arabidopsis thaliana HOM05D011699 ORTHO05D008062 6.2e-69 265.0 259 62.9
Thhalv10002691m.g Eutrema salsugineum HOM05D011699 ORTHO05D008062 3.4e-51 206.1 163 71.8
CARHR101080 Cardamine hirsuta HOM05D011699 ORTHO05D008062 2.2e-50 203.4 255 52.9
Eucgr.H00807 Eucalyptus grandis HOM05D000347 ORTHO05D008062 1.4e-23 114.4 283 34.6
Potri.002G240300 Populus trichocarpa HOM05D000347 ORTHO05D008062 1.4e-20 104.4 211 37.0
MD05G1178500 Malus domestica HOM05D000347 ORTHO05D008062 2.4e-20 103.6 291 32.6
THA.LOC104821644 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 5.4e-20 102.4 179 43.6
TWI18G0408 Tripterygium wilfordii HOM05D000347 ORTHO05D008062 5.4e-20 102.4 237 35.4
Ciclev10021356m.g Citrus clementina HOM05D000347 ORTHO05D008062 7.0e-20 102.1 299 32.1
Lj1g0023077 Lotus japonicus HOM05D000347 ORTHO05D008062 2.0e-19 100.5 268 31.7
Dinv19218 Davidia involucrata HOM05D000347 ORTHO05D008062 1.0e-18 98.2 280 31.4
Solyc06g083560.3 Solanum lycopersicum HOM05D000347 ORTHO05D008062 1.7e-18 97.4 275 31.6
Manes.12G042000 Manihot esculenta HOM05D000347 ORTHO05D008062 2.3e-18 97.1 281 31.7
THA.LOC104804603 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 3.8e-18 96.3 280 32.9
MD10G1166700 Malus domestica HOM05D000347 ORTHO05D008062 6.6e-18 95.5 293 33.1
Actinidia23733 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.1e-17 94.7 263 31.6
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 1.1e-17 94.7 263 32.7
Lalb_Chr03g0041901 Lupinus albus HOM05D000347 ORTHO05D008062 1.5e-17 94.4 202 34.7
Thecc.01G228300 Theobroma cacao HOM05D000347 ORTHO05D008062 1.9e-17 94.0 279 34.4
GSVIVG01028561001 Vitis vinifera HOM05D000347 ORTHO05D008062 1.9e-17 94.0 261 33.3
Prupe.8G205000 Prunus persica HOM05D000347 ORTHO05D000694 2.5e-17 93.6 233 34.3
Sopen06g034940 Solanum pennellii HOM05D000347 ORTHO05D008062 3.3e-17 93.2 275 30.9
Gohir.D11G142500 Gossypium hirsutum HOM05D000347 ORTHO05D008062 4.2e-17 92.8 275 31.3
Gorai.007G152800 Gossypium raimondii HOM05D000347 ORTHO05D008062 5.5e-17 92.4 274 31.4
Sabra02G0183100 Salix brachista HOM05D000347 ORTHO05D008062 5.5e-17 92.4 256 34.8
Cpa.g.sc8.175 Carica papaya HOM05D000347 ORTHO05D008062 9.5e-17 91.7 294 31.3
CiPaw.04G106800 Carya illinoinensis HOM05D000347 ORTHO05D000694 9.5e-17 91.7 269 32.0
Gohir.A11G136100 Gossypium hirsutum HOM05D000347 ORTHO05D008062 9.5e-17 91.7 270 30.4
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 1.6e-16 90.9 296 31.8
FAN15G1475 Fragaria x ananassa HOM05D000347 ORTHO05D000694 1.6e-16 90.9 217 34.6
Phvul.008G123300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 1.6e-16 90.9 288 31.2
PGR083G0949 Punica granatum HOM05D000347 ORTHO05D008062 2.1e-16 90.5 271 29.9
CANSAT01G0926 Cannabis sativa HOM05D000347 ORTHO05D008062 2.8e-16 90.1 308 29.2
CsaV3_3G028770 Cucumis sativus L. HOM05D000347 ORTHO05D008062 6.1e-16 89.0 277 32.5
Glyma.08G356200 Glycine max HOM05D000347 ORTHO05D008062 6.1e-16 89.0 281 31.7
FAN24G2098 Fragaria x ananassa HOM05D000347 ORTHO05D000694 1.0e-15 88.2 218 33.9
VMungo1383G0854 Vigna mungo HOM05D000347 ORTHO05D008062 3.0e-15 86.7 278 30.9
Migut.D00520 Erythranthe guttata HOM05D000347 ORTHO05D008062 4.0e-15 86.3 303 30.4
Sed0024241 Sechium edule HOM05D000347 ORTHO05D008062 5.2e-15 85.9 269 32.3
FAN27G2014 Fragaria x ananassa HOM05D000347 ORTHO05D008062 8.9e-15 85.1 294 31.3
Solyc09g061715.1 Solanum lycopersicum HOM05D000347 ORTHO05D008062 1.5e-14 84.3 256 32.4
Sopen09g024710 Solanum pennellii HOM05D000347 ORTHO05D008062 1.5e-14 84.3 256 32.4
Glyma.18G173300 Glycine max HOM05D000347 ORTHO05D008062 2.0e-14 84.0 284 31.0
Hma1.2p1_0351F.1_g132820 Hydrangea macrophylla HOM05D000347 ORTHO05D008062 2.0e-14 84.0 274 28.8
TAR365G0021 Trochodendron aralioides HOM05D000347 ORTHO05D008062 2.0e-14 84.0 297 30.3
CSS0034279 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D008062 2.6e-14 83.6 149 38.9
Cc01_g17250 Coffea canephora HOM05D000347 ORTHO05D008062 2.6e-14 83.6 296 30.4
FvH4_2g19360 Fragaria vesca HOM05D000347 ORTHO05D008062 2.6e-14 83.6 292 29.8
Medtr0027s0180 Medicago truncatula HOM05D000347 ORTHO05D008062 3.4e-14 83.2 244 32.8
RcHm_v2.0_Chr6g0285151 Rosa chinensis HOM05D000347 ORTHO05D008062 7.5e-14 82.0 228 31.1
Gohir.D08G211800 Gossypium hirsutum HOM05D000347 ORTHO05D008062 9.8e-14 81.6 278 29.1
Gorai.004G225100 Gossypium raimondii HOM05D000347 ORTHO05D008062 1.7e-13 80.9 277 28.9
MELO3C018065.2 Cucumis melo HOM05D000347 ORTHO05D008062 2.8e-13 80.1 118 46.6
Sed0024927 Sechium edule HOM05D000901 ORTHO05D008062 3.7e-13 79.7 283 29.7
QL09p044668 Quercus lobata HOM05D000347 ORTHO05D008062 1.4e-12 77.8 132 39.4
Gohir.A08G194000 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.8e-12 77.4 276 28.6
Nn1g07779 Nelumbo nucifera HOM05D000347 ORTHO05D008062 2.4e-12 77.0 298 30.9
Psat3g142320 Pisum sativum HOM05D000347 ORTHO05D008062 4.1e-12 76.3 270 28.9
PGSC0003DMG400003422 Solanum tuberosum HOM05D000347 ORTHO05D008062 5.4e-12 75.9 137 40.1
TPR.G15284 Trifolium pratense HOM05D000347 ORTHO05D008062 5.4e-12 75.9 273 27.5
Actinidia30090 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.2e-11 74.7 134 42.5
Nitab4.5_0000866g0010 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.6e-11 74.3 286 32.2
TAR365G1261 Trochodendron aralioides HOM05D000347 ORTHO05D008062 3.5e-11 73.2 305 28.9
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 4.5e-11 72.8 167 37.7
Glyma.16G094000 Glycine max HOM05D000347 ORTHO05D008062 7.8e-11 72.0 266 27.8
Aa31LG8G11910 Aethionema arabicum HOM05D011699 ORTHO05D008062 1.0e-10 71.6 80 53.8
SalBow4G1846 Salvia bowleyana HOM05D000347 ORTHO05D008062 1.3e-10 71.2 129 40.3
Actinidia37581 Actinidia chinensis HOM05D000347 ORTHO05D008062 2.9e-10 70.1 176 35.2
Peaxi162Scf00517g00428 Petunia axillaris HOM05D000347 ORTHO05D008062 8.6e-10 68.6 193 32.1
Atru.chr5.2056 Acer truncatum HOM05D000347 ORTHO05D008062 1.1e-09 68.2 109 45.0
Medtr7g059080 Medicago truncatula HOM05D000347 ORTHO05D008062 1.9e-09 67.4 169 36.1
CiPaw.03G151400 Carya illinoinensis HOM05D000347 ORTHO05D008062 3.3e-09 66.6 130 37.7
Aqoxy2G03776 Aquilegia oxysepala HOM05D000347 ORTHO05D008062 5.6e-09 65.9 215 32.1
arahy.Tifrunner.gnm1.ann1.54FW37 Arachis hypogaea HOM05D000347 ORTHO05D008062 5.6e-09 65.9 220 30.9
Sc24g0003600 Simmondsia chinensis HOM05D000347 ORTHO05D008062 7.3e-09 65.5 122 39.3
Ca_07542_v3 Cicer arietinum L. HOM05D000347 ORTHO05D008062 9.5e-09 65.1 161 34.2
HanXRQChr01g0014681 Helianthus annuus HOM05D000347 ORTHO05D008062 9.5e-09 65.1 183 31.7
Lsat_1_v5_gn_5_179760 Lactuca sativa HOM05D000347 ORTHO05D008062 2.8e-08 63.5 178 33.7
Lalb_Chr01g0022451 Lupinus albus HOM05D000347 ORTHO05D008062 3.6e-08 63.2 267 27.3
SGA_v2.0_scaffold1G00715 Striga asiatica HOM05D000347 ORTHO05D008062 3.6e-08 63.2 191 30.9
Aa31LG8G11900 Aethionema arabicum HOM05D011699 ORTHO05D008062 4.7e-08 62.8 79 54.4
Ah.08g214040 Amaranthus hybridus HOM05D000901 ORTHO05D008062 4.7e-08 62.8 244 31.6
arahy.Tifrunner.gnm1.ann1.W0YDFD Arachis hypogaea HOM05D000347 ORTHO05D008062 6.1e-08 62.4 287 30.7
TAR636G2566 Trochodendron aralioides HOM05D000347 ORTHO05D008062 6.1e-08 62.4 293 26.3
Nitab4.5_0002085g0080 Nicotiana tabacum HOM05D000347 ORTHO05D008062 3.1e-07 60.1 193 30.1
MSTRG.21431 Avicennia marina HOM05D000347 ORTHO05D008062 4.0e-07 59.7 280 28.2
Rhsim13G0044000 Rhododendron simsii HOM05D000347 ORTHO05D008062 4.0e-07 59.7 135 40.7
Haze_24776 Corylus avellana HOM05D000347 ORTHO05D008062 5.2e-07 59.3 204 28.4
Peaxi162Scf02141g00004 Petunia axillaris HOM05D000347 ORTHO05D008062 6.8e-07 58.9 176 30.1
Medtr0027s0200 Medicago truncatula HOM05D000347 ORTHO05D008062 8.9e-07 58.5 182 31.3
AUR62008877 Chenopodium quinoa HOM05D000347 ORTHO05D008062 1.5e-06 57.8 162 35.2
Lj3g0009150 Lotus japonicus HOM05D000347 ORTHO05D008062 1.5e-06 57.8 192 31.8
Nitab4.5_0003790g0070 Nicotiana tabacum HOM05D000347 ORTHO05D008062 3.4e-06 56.6 118 41.5
VMungo0331G1006 Vigna mungo HOM05D000347 ORTHO05D008062 5.8e-06 55.8 261 27.6


User provided reference genes

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