Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26686 Brassica carinata HOM05D001910 ORTHO05D008236 2.8e-28 127.9 63 100.0
BcaB03g14567 Brassica carinata HOM05D001910 ORTHO05D008236 3.0e-14 81.3 54 81.5
BcaC01g03256 Brassica carinata HOM05D001910 ORTHO05D008236 3.9e-14 80.9 54 79.6
C03p54270 Brassica napus HOM05D001910 ORTHO05D008236 3.9e-14 80.9 54 79.6
BolC3t17713H Brassica oleracea HOM05D001910 ORTHO05D008236 3.9e-14 80.9 54 79.6
BraA03t13522Z Brassica rapa HOM05D001910 ORTHO05D008236 3.9e-14 80.9 54 79.6
A03p43920 Brassica napus HOM05D001910 ORTHO05D008236 5.1e-14 80.5 54 79.6
AL3G40450 Arabidopsis lyrata HOM05D001910 ORTHO05D008236 8.7e-14 79.7 54 77.8
AT3G24730 Arabidopsis thaliana HOM05D001910 ORTHO05D008236 1.5e-13 79.0 54 77.8
Carub.0003s2512 Capsella rubella HOM05D001910 ORTHO05D008236 3.3e-13 77.8 54 75.9
EL10Ac1g01456 Beta vulgaris HOM05D001910 ORTHO05D008236 5.7e-13 77.0 54 75.9
EL10Ac4g08878 Beta vulgaris HOM05D001910 ORTHO05D008236 5.7e-13 77.0 54 75.9
Thhalv10002702m.g Eutrema salsugineum HOM05D001910 ORTHO05D008236 5.7e-13 77.0 54 74.1
AUR62037535 Chenopodium quinoa HOM05D001910 ORTHO05D008236 7.4e-13 76.6 60 66.7
THA.LOC104808775 Tarenaya hassleriana HOM05D001910 ORTHO05D008236 7.4e-13 76.6 54 72.2
Eucgr.H00809 Eucalyptus grandis HOM05D001910 ORTHO05D008236 9.7e-13 76.3 54 72.2
Gohir.D01G042702 Gossypium hirsutum HOM05D001910 ORTHO05D008236 9.7e-13 76.3 54 74.1
Gorai.002G053700 Gossypium raimondii HOM05D001910 ORTHO05D008236 9.7e-13 76.3 54 74.1
QL07p034638 Quercus lobata HOM05D001910 ORTHO05D008236 9.7e-13 76.3 59 66.1
Nn1g03143 Nelumbo nucifera HOM05D001910 ORTHO05D008236 1.3e-12 75.9 54 72.2
Nitab4.5_0006465g0020 Nicotiana tabacum HOM05D001910 ORTHO05D008236 1.3e-12 75.9 62 67.7
THA.LOC104821641 Tarenaya hassleriana HOM05D001910 ORTHO05D008236 1.3e-12 75.9 54 72.2
TAR365G0897 Trochodendron aralioides HOM05D001910 ORTHO05D008236 1.3e-12 75.9 54 72.2
Ciclev10022683m.g Citrus clementina HOM05D001910 ORTHO05D008236 1.6e-12 75.5 54 72.2
CARHR101060 Cardamine hirsuta HOM05D001910 ORTHO05D008236 2.8e-12 74.7 54 74.1
Cpa.g.sc8.177 Carica papaya HOM05D001910 ORTHO05D008236 2.8e-12 74.7 54 68.5
Sp3g22460 Schrenkiella parvula HOM05D001910 ORTHO05D008236 2.8e-12 74.7 54 74.1
SEGI_34564 Sequoiadendron giganteum HOM05D001910 ORTHO05D008236 2.8e-12 74.7 54 66.7
GSVIVG01028558001 Vitis vinifera HOM05D001910 ORTHO05D008236 2.8e-12 74.7 54 70.4
CSS0019761 Camellia sinensis var. sinensis HOM05D001910 ORTHO05D008236 3.7e-12 74.3 54 68.5
Duzib213G0818 Durio zibethinus HOM05D001910 ORTHO05D008236 3.7e-12 74.3 54 70.4
Lj5g0014177 Lotus japonicus HOM05D001910 ORTHO05D008236 3.7e-12 74.3 54 70.4
Hund05522 Selenicereus undatus HOM05D001910 ORTHO05D008236 3.7e-12 74.3 54 70.4
AUR62044047 Chenopodium quinoa HOM05D001910 ORTHO05D008236 4.8e-12 73.9 55 69.1
COL.COLO4_17529 Corchorus olitorius HOM05D001910 ORTHO05D008236 4.8e-12 73.9 54 70.4
Dinv04667 Davidia involucrata HOM05D001910 ORTHO05D008236 4.8e-12 73.9 54 68.5
FvH4_3g25760 Fragaria vesca HOM05D001910 ORTHO05D008236 4.8e-12 73.9 54 70.4
FAN11G0824 Fragaria x ananassa HOM05D001910 ORTHO05D008236 4.8e-12 73.9 54 70.4
FAN16G2655 Fragaria x ananassa HOM05D001910 ORTHO05D008236 4.8e-12 73.9 54 70.4
Oeu020385.1 Olea europaea HOM05D001910 ORTHO05D008236 4.8e-12 73.9 54 68.5
RcHm_v2.0_Chr5g0046911 Rosa chinensis HOM05D001910 ORTHO05D008236 4.8e-12 73.9 54 72.2
CsaV3_7G025770 Cucumis sativus L. HOM05D001910 ORTHO05D008236 6.3e-12 73.6 54 68.5
FAN25G3251 Fragaria x ananassa HOM05D001910 ORTHO05D008236 6.3e-12 73.6 54 68.5
HanXRQChr01g0014701 Helianthus annuus HOM05D001910 ORTHO05D008236 6.3e-12 73.6 54 66.7
QL08p015909 Quercus lobata HOM05D001910 ORTHO05D008236 6.3e-12 73.6 54 68.5
ATR0580G225 Amborella trichopoda HOM05D001910 ORTHO05D008236 8.2e-12 73.2 54 68.5
CDE02G3332 Ceratophyllum demersum HOM05D001910 ORTHO05D008236 8.2e-12 73.2 54 68.5
DCAR_012631 Daucus carota HOM05D001910 ORTHO05D008236 8.2e-12 73.2 54 68.5
Duzib116G0073 Durio zibethinus HOM05D001910 ORTHO05D008236 8.2e-12 73.2 54 68.5
Lsat_1_v5_gn_5_179721 Lactuca sativa HOM05D001910 ORTHO05D008236 8.2e-12 73.2 54 64.8
vmacro14768 Vaccinium macrocarpon HOM05D001910 ORTHO05D008236 8.2e-12 73.2 54 66.7
arahy.Tifrunner.gnm1.ann1.6V862X Arachis hypogaea HOM05D001910 ORTHO05D008236 1.1e-11 72.8 54 68.5
arahy.Tifrunner.gnm1.ann1.BW0B7M Arachis hypogaea HOM05D001910 ORTHO05D008236 1.1e-11 72.8 54 68.5
Glyma.20G189700 Glycine max HOM05D001910 ORTHO05D008236 1.1e-11 72.8 54 66.7
Gohir.A01G053300 Gossypium hirsutum HOM05D001910 ORTHO05D008236 1.1e-11 72.8 54 70.4
Manes.12G042200 Manihot esculenta HOM05D001910 ORTHO05D008236 1.1e-11 72.8 54 68.5
Peaxi162Scf00517g00431 Petunia axillaris HOM05D001910 ORTHO05D008236 1.1e-11 72.8 54 72.2
VMungo0720G1587 Vigna mungo HOM05D001910 ORTHO05D008236 1.1e-11 72.8 54 66.7
Aqoxy2G03787 Aquilegia oxysepala HOM05D001910 ORTHO05D008236 1.4e-11 72.4 54 70.4
Ca_10470_v3 Cicer arietinum L. HOM05D001910 ORTHO05D008236 1.4e-11 72.4 54 68.5
Haze_24772 Corylus avellana HOM05D001910 ORTHO05D008236 1.4e-11 72.4 54 66.7
MELO3C012778.2 Cucumis melo HOM05D001910 ORTHO05D008236 1.4e-11 72.4 54 66.7
Medtr1g080840 Medicago truncatula HOM05D001910 ORTHO05D008236 1.4e-11 72.4 54 68.5
Nitab4.5_0002085g0120 Nicotiana tabacum HOM05D001910 ORTHO05D008236 1.4e-11 72.4 54 72.2
Psat5g176160 Pisum sativum HOM05D001910 ORTHO05D008236 1.4e-11 72.4 54 66.7
Potri.001G287600 Populus trichocarpa HOM05D001910 ORTHO05D008236 1.4e-11 72.4 54 68.5
Sc05g0002380 Simmondsia chinensis HOM05D001910 ORTHO05D008236 1.4e-11 72.4 54 66.7
SGA_v2.0_scaffold1G00713 Striga asiatica HOM05D001910 ORTHO05D008236 1.4e-11 72.4 54 68.5
SGA_v2.0_scaffold467G52032 Striga asiatica HOM05D001910 ORTHO05D008236 1.4e-11 72.4 54 68.5
Thecc.07G118300 Theobroma cacao HOM05D001910 ORTHO05D008236 1.4e-11 72.4 54 68.5
TPR.G22393 Trifolium pratense HOM05D001910 ORTHO05D008236 1.4e-11 72.4 54 68.5
MSTRG.21434 Avicennia marina HOM05D001910 ORTHO05D008236 1.8e-11 72.0 54 70.4
Cc02_g29620 Coffea canephora HOM05D001910 ORTHO05D008236 1.8e-11 72.0 54 70.4
Lj5g0012786 Lotus japonicus HOM05D001910 ORTHO05D008236 1.8e-11 72.0 52 71.2
Lj5g0025373 Lotus japonicus HOM05D001910 ORTHO05D008236 1.8e-11 72.0 52 71.2
MD11G1172800 Malus domestica HOM05D001910 ORTHO05D008236 1.8e-11 72.0 54 66.7
Sed0026342 Sechium edule HOM05D001910 ORTHO05D008236 1.8e-11 72.0 54 64.8
ClCG09G009170 Citrullus lanatus HOM05D001910 ORTHO05D008236 2.4e-11 71.6 54 66.7
PSO455G0057 Papaver somniferum HOM05D001910 ORTHO05D008236 2.4e-11 71.6 54 66.7
vmacro11682 Vaccinium macrocarpon HOM05D001910 ORTHO05D008236 2.4e-11 71.6 54 66.7
Phvul.007G144300 Phaseolus vulgaris HOM05D001910 ORTHO05D008236 3.1e-11 71.2 54 66.7
Prupe.2G099400 Prunus persica HOM05D001910 ORTHO05D008236 3.1e-11 71.2 54 64.8
QL04p069147 Quercus lobata HOM05D001910 ORTHO05D008236 3.1e-11 71.2 54 66.7
QL07p034561 Quercus lobata HOM05D001910 ORTHO05D008236 3.1e-11 71.2 54 66.7
QL08p015961 Quercus lobata HOM05D001910 ORTHO05D008236 3.1e-11 71.2 54 66.7
Sabra16G0179900 Salix brachista HOM05D001910 ORTHO05D008236 3.1e-11 71.2 54 66.7
Solyc06g083570.3 Solanum lycopersicum HOM05D001910 ORTHO05D008236 3.1e-11 71.2 54 70.4
Sopen06g034950 Solanum pennellii HOM05D001910 ORTHO05D008236 3.1e-11 71.2 54 70.4
PGSC0003DMG400020157 Solanum tuberosum HOM05D001910 ORTHO05D008236 3.1e-11 71.2 54 70.4
CANSAT01G2429 Cannabis sativa HOM05D001910 ORTHO05D008236 4.1e-11 70.9 54 70.4
Lj2A1134T22 Lonicera japonica HOM05D001910 ORTHO05D008236 4.1e-11 70.9 56 64.3
Pp3c22_7790 Physcomitrium patens HOM05D001910 ORTHO05D008236 4.1e-11 70.9 54 64.8
PGR083G0261 Punica granatum HOM05D001910 ORTHO05D008236 4.1e-11 70.9 54 68.5
Cfa002548 Carpinus fangiana HOM05D001910 ORTHO05D008236 5.3e-11 70.5 54 68.5
Migut.D00518 Erythranthe guttata HOM05D001910 ORTHO05D008236 6.9e-11 70.1 54 66.7
Hma1.2p1_0670F.1_g200480 Hydrangea macrophylla HOM05D001910 ORTHO05D008236 6.9e-11 70.1 54 66.7
Hma1.2p1_0670F.1_g200490 Hydrangea macrophylla HOM05D001910 ORTHO05D008236 6.9e-11 70.1 54 66.7
Rhsim01G0257800 Rhododendron simsii HOM05D001910 ORTHO05D008236 6.9e-11 70.1 54 64.8
Lalb_Chr21g0313131 Lupinus albus HOM05D001910 ORTHO05D008236 9.1e-11 69.7 54 63.0
QL04p055010 Quercus lobata HOM05D001910 ORTHO05D008236 9.1e-11 69.7 54 64.8
HPP92_008933 Vanilla planifolia HOM05D001910 ORTHO05D008236 9.1e-11 69.7 54 63.0
CAN.G771.59 Capsicum annuum HOM05D001910 ORTHO05D008236 1.2e-10 69.3 54 70.4
SalBow4G2176 Salvia bowleyana HOM05D001910 ORTHO05D008236 1.2e-10 69.3 54 68.5
TWI36G0271 Tripterygium wilfordii HOM05D001910 ORTHO05D008236 1.2e-10 69.3 55 65.5
CiPaw.03G151600 Carya illinoinensis HOM05D001910 ORTHO05D008236 1.5e-10 68.9 54 64.8
CANSAT01G0581 Cannabis sativa HOM05D001910 ORTHO05D008236 2.0e-10 68.6 54 68.5
Atru.chr8.786 Acer truncatum HOM05D001910 ORTHO05D008236 2.6e-10 68.2 54 66.7
Mapoly0023s0044 Marchantia polymorpha HOM05D001910 ORTHO05D008236 2.6e-10 68.2 54 61.1
Zm00001eb327680 Zea mays HOM05D001910 ORTHO05D008236 2.6e-10 68.2 54 63.0
RcHm_v2.0_Chr5g0047331 Rosa chinensis HOM05D001910 ORTHO05D008236 4.5e-10 67.4 54 68.5
Actinidia30091 Actinidia chinensis HOM05D001910 ORTHO05D008236 5.9e-10 67.0 54 63.0
AagrBONN_evm.TU.Sc2ySwM_117.2466 Anthoceros agrestis HOM05D001910 ORTHO05D008236 7.7e-10 66.6 54 61.1
Actinidia37580 Actinidia chinensis HOM05D001910 ORTHO05D008236 1.0e-09 66.2 54 63.0
SMO367G1217 Selaginella moellendorffii HOM05D001910 ORTHO05D008236 1.0e-09 66.2 54 57.4
Aa31LG8G7820 Aethionema arabicum HOM05D001910 ORTHO05D008236 2.2e-09 65.1 54 63.0
CBR_g52407 Chara braunii HOM05D001910 ORTHO05D008236 6.5e-09 63.5 54 61.1
Os11g0297900 Oryza sativa ssp. japonica HOM05D001910 ORTHO05D008236 6.5e-09 63.5 54 59.3
unitig_8.g3604 Utricularia gibba HOM05D001910 ORTHO05D008236 1.1e-08 62.8 54 57.4


User provided reference genes

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