Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26630 Brassica carinata HOM05D066180 ORTHO05D090926 3.8e-137 491.5 250 100.0
BcaB06g27053 Brassica carinata HOM05D066180 ORTHO05D096093 1.7e-44 183.7 98 93.9
BcaB08g36949 Brassica carinata HOM05D001794 ORTHO05D007659 8.2e-23 111.7 74 85.1
C09p62390 Brassica napus HOM05D001794 ORTHO05D007659 2.2e-20 103.6 76 80.3
BcaC04g19011 Brassica carinata HOM05D001794 ORTHO05D007659 1.9e-19 100.5 76 78.9
BolC9t59077H Brassica oleracea HOM05D001794 ORTHO05D007659 1.9e-19 100.5 76 78.9
A10p23920 Brassica napus HOM05D001794 ORTHO05D007659 2.5e-19 100.1 76 78.9
BraA10t44456Z Brassica rapa HOM05D001794 ORTHO05D007659 2.5e-19 100.1 76 78.9
Sp6g29280 Schrenkiella parvula HOM05D001794 ORTHO05D007659 3.2e-19 99.8 77 76.6
AL6G25560 Arabidopsis lyrata HOM05D001794 ORTHO05D007659 4.2e-19 99.4 77 76.6
CARHR198550 Cardamine hirsuta HOM05D001794 ORTHO05D007659 1.2e-18 97.8 77 76.6
AT5G14760 Arabidopsis thaliana HOM05D001794 ORTHO05D007659 4.7e-18 95.9 74 71.6
Thhalv10015655m.g Eutrema salsugineum HOM05D001794 ORTHO05D007659 1.8e-17 94.0 72 77.8
Carub.0006s1293 Capsella rubella HOM05D001794 ORTHO05D007659 1.2e-16 91.3 73 74.0
Aa31LG11G14700 Aethionema arabicum HOM05D001794 ORTHO05D007659 3.7e-15 86.3 98 54.1
THA.LOC104821074 Tarenaya hassleriana HOM05D001794 ORTHO05D007659 1.2e-10 71.2 69 58.0
FAN09G1732 Fragaria x ananassa HOM05D001794 ORTHO05D007659 8.0e-10 68.6 72 55.6
FAN05G4092 Fragaria x ananassa HOM05D001794 ORTHO05D007659 1.0e-09 68.2 72 55.6
Dinv33489 Davidia involucrata HOM05D001794 ORTHO05D007659 2.3e-09 67.0 81 49.4
FAN02G0205 Fragaria x ananassa HOM05D001794 ORTHO05D007659 2.3e-09 67.0 72 54.2
Lj2g0026373 Lotus japonicus HOM05D001794 ORTHO05D007659 3.0e-09 66.6 84 45.2
QL02p076387 Quercus lobata HOM05D001794 ORTHO05D007659 3.0e-09 66.6 77 57.1
FvH4_6g50750 Fragaria vesca HOM05D001794 ORTHO05D007659 4.0e-09 66.2 72 54.2
CANSAT64G1634 Cannabis sativa HOM05D001794 ORTHO05D007659 5.2e-09 65.9 77 54.5
CSS0045670 Camellia sinensis var. sinensis HOM05D001794 ORTHO05D007659 6.8e-09 65.5 78 50.0
Duzib147G1267 Durio zibethinus HOM05D001794 ORTHO05D007659 6.8e-09 65.5 74 58.1
RcHm_v2.0_Chr2g0171691 Rosa chinensis HOM05D001794 ORTHO05D007659 6.8e-09 65.5 72 52.8
TWI12G0896 Tripterygium wilfordii HOM05D001794 ORTHO05D007659 6.8e-09 65.5 77 54.5
FAN14G0059 Fragaria x ananassa HOM05D001794 ORTHO05D007659 8.8e-09 65.1 72 52.8
Haze_14676 Corylus avellana HOM05D001794 ORTHO05D007659 1.2e-08 64.7 77 54.5
Sc16g0003620 Simmondsia chinensis HOM05D001794 ORTHO05D023821 1.2e-08 64.7 76 56.6
Hma1.2p1_0993F.1_g245500 Hydrangea macrophylla HOM05D001794 ORTHO05D007659 1.5e-08 64.3 80 52.5
Hma1.2p1_3249F.1_g334420 Hydrangea macrophylla HOM05D001794 ORTHO05D007659 1.5e-08 64.3 80 52.5
Atru.chr6.2304 Acer truncatum HOM05D001794 ORTHO05D007659 2.0e-08 63.9 91 51.6
Gohir.A07G220600 Gossypium hirsutum HOM05D001794 ORTHO05D007659 2.0e-08 63.9 91 47.3
Gohir.D07G227300 Gossypium hirsutum HOM05D001794 ORTHO05D007659 2.0e-08 63.9 91 47.3
MD17G1034300 Malus domestica HOM05D001794 ORTHO05D007659 2.0e-08 63.9 76 55.3
Thecc.04G009900 Theobroma cacao HOM05D001794 ORTHO05D007659 2.0e-08 63.9 74 55.4
Ca_04193_v3 Cicer arietinum L. HOM05D001794 ORTHO05D007659 2.6e-08 63.5 94 44.7
GSVIVG01032470001 Vitis vinifera HOM05D001794 ORTHO05D007659 2.6e-08 63.5 79 48.1
Lalb_Chr06g0176021 Lupinus albus HOM05D001794 ORTHO05D007659 4.4e-08 62.8 95 43.2
Rhsim10G0021600 Rhododendron simsii HOM05D001794 ORTHO05D007659 4.4e-08 62.8 78 52.6
arahy.Tifrunner.gnm1.ann1.V2BCF1 Arachis hypogaea HOM05D001794 ORTHO05D007659 5.7e-08 62.4 72 52.8
Cfa008568 Carpinus fangiana HOM05D001794 ORTHO05D007659 5.7e-08 62.4 96 46.9
Gorai.001G262200 Gossypium raimondii HOM05D001794 ORTHO05D007659 5.7e-08 62.4 74 52.7
SGA_v2.0_scaffold135G34872 Striga asiatica HOM05D001794 ORTHO05D007659 5.7e-08 62.4 78 48.7
MD09G1032700 Malus domestica HOM05D001794 ORTHO05D007659 7.5e-08 62.0 76 53.9
arahy.Tifrunner.gnm1.ann1.L6XTUR Arachis hypogaea HOM05D001794 ORTHO05D007659 9.8e-08 61.6 72 51.4
CAN.G1806.2 Capsicum annuum HOM05D001794 ORTHO05D007659 9.8e-08 61.6 75 50.7
CiPaw.04G025100 Carya illinoinensis HOM05D001794 ORTHO05D007659 9.8e-08 61.6 88 50.0
COL.COLO4_28976 Corchorus olitorius HOM05D001794 ORTHO05D007659 9.8e-08 61.6 73 52.1
Duzib264G1210 Durio zibethinus HOM05D001794 ORTHO05D007659 9.8e-08 61.6 78 51.3
Sabra16G0228200 Salix brachista HOM05D001794 ORTHO05D007659 9.8e-08 61.6 79 53.2
DCAR_021686 Daucus carota HOM05D001794 ORTHO05D007659 1.3e-07 61.2 95 43.2
Nitab4.5_0002338g0020 Nicotiana tabacum HOM05D001794 ORTHO05D007659 1.3e-07 61.2 75 49.3
Aqoxy7G01736 Aquilegia oxysepala HOM05D001794 ORTHO05D007659 1.7e-07 60.8 81 44.4
Cpa.g.sc39.79 Carica papaya HOM05D001794 ORTHO05D007659 2.2e-07 60.5 77 54.5
Eucgr.I01794 Eucalyptus grandis HOM05D001794 ORTHO05D007659 2.2e-07 60.5 91 44.0
Manes.17G120500 Manihot esculenta HOM05D001794 ORTHO05D007659 2.2e-07 60.5 78 50.0
Medtr6g007070 Medicago truncatula HOM05D001794 ORTHO05D007659 2.8e-07 60.1 84 46.4
ClCG09G018960 Citrullus lanatus HOM05D001794 ORTHO05D007659 3.7e-07 59.7 83 45.8
Dinv35068 Davidia involucrata HOM05D001794 ORTHO05D007659 3.7e-07 59.7 81 46.9
ECA246G1151 Erigeron canadensis HOM05D001794 ORTHO05D007659 3.7e-07 59.7 59 57.6
Oeu062921.1 Olea europaea HOM05D001794 ORTHO05D007659 3.7e-07 59.7 86 44.2
Sed0001215 Sechium edule HOM05D001794 ORTHO05D007659 3.7e-07 59.7 37 78.4
Solyc12g014530.3 Solanum lycopersicum HOM05D001794 ORTHO05D007659 3.7e-07 59.7 75 49.3
Sopen12g007400 Solanum pennellii HOM05D001794 ORTHO05D007659 3.7e-07 59.7 75 49.3
TWI56G0328 Tripterygium wilfordii HOM05D001794 ORTHO05D007659 3.7e-07 59.7 74 52.7
Lj7C592T2 Lonicera japonica HOM05D001794 ORTHO05D007659 4.9e-07 59.3 84 46.4
Actinidia36088 Actinidia chinensis HOM05D001794 ORTHO05D007659 6.3e-07 58.9 70 54.3
Lsat_1_v5_gn_3_70920 Lactuca sativa HOM05D001794 ORTHO05D007659 6.3e-07 58.9 72 48.6
Nitab4.5_0005830g0010 Nicotiana tabacum HOM05D001794 ORTHO05D007659 6.3e-07 58.9 75 48.0
Prupe.3G285300 Prunus persica HOM05D001794 ORTHO05D007659 6.3e-07 58.9 73 47.9
SalBow1G4162 Salvia bowleyana HOM05D001794 ORTHO05D007659 6.3e-07 58.9 70 50.0
PGSC0003DMG400012848 Solanum tuberosum HOM05D001794 ORTHO05D007659 6.3e-07 58.9 75 49.3
Haze_14674 Corylus avellana HOM05D001794 ORTHO05D007659 8.3e-07 58.5 111 34.2
MELO3C021545.2 Cucumis melo HOM05D001794 ORTHO05D007659 8.3e-07 58.5 37 78.4
Cc07_g02190 Coffea canephora HOM05D001794 ORTHO05D007659 1.4e-06 57.8 75 49.3
ATR0730G204 Amborella trichopoda HOM05D001794 ORTHO05D007659 1.8e-06 57.4 100 38.0
CsaV3_5G027390 Cucumis sativus L. HOM05D001794 ORTHO05D007659 1.8e-06 57.4 37 78.4
Nitab4.5_0002338g0060 Nicotiana tabacum HOM05D001794 ORTHO05D023821 1.8e-06 57.4 34 79.4
Potri.001G348600 Populus trichocarpa HOM05D001794 ORTHO05D007659 1.8e-06 57.4 75 50.7
Migut.H00116 Erythranthe guttata HOM05D001794 ORTHO05D007659 2.4e-06 57.0 73 45.2
SHI03735 Sapria himalayana HOM05D001794 ORTHO05D007659 2.4e-06 57.0 50 58.0
SMO347G0446 Selaginella moellendorffii HOM05D001794 ORTHO05D007659 2.4e-06 57.0 54 55.6
TPR.G2266 Trifolium pratense HOM05D001794 ORTHO05D007659 2.4e-06 57.0 122 37.7
vmacro05829 Vaccinium macrocarpon HOM05D001794 ORTHO05D007659 2.4e-06 57.0 81 45.7
Ciclev10014558m.g Citrus clementina HOM05D001794 ORTHO05D007659 3.1e-06 56.6 74 52.7
HanXRQChr15g0465291 Helianthus annuus HOM05D001794 ORTHO05D007659 3.1e-06 56.6 34 82.4
AagrBONN_evm.TU.Sc2ySwM_228.1868 Anthoceros agrestis HOM05D001794 ORTHO05D007659 4.1e-06 56.2 44 54.5
MSTRG.3299 Avicennia marina HOM05D001794 ORTHO05D007659 4.1e-06 56.2 76 50.0
Glyma.05G007600 Glycine max HOM05D001794 ORTHO05D007659 4.1e-06 56.2 77 48.1
SEGI_30695 Sequoiadendron giganteum HOM05D001794 ORTHO05D007659 4.1e-06 56.2 53 56.6
SEGI_39126 Sequoiadendron giganteum HOM05D001794 ORTHO05D023821 4.1e-06 56.2 53 56.6
MBI10_g09175_MAGBIO Magnolia biondii HOM05D001794 ORTHO05D007659 5.4e-06 55.8 37 73.0
Nn4g22777 Nelumbo nucifera HOM05D001794 ORTHO05D007659 5.4e-06 55.8 83 42.2
Oeu043056.1 Olea europaea HOM05D007843 ORTHO05D003639 7.0e-06 55.5 33 81.8
Zm00001eb231540 Zea mays HOM05D001794 ORTHO05D007659 7.0e-06 55.5 83 43.4
Peaxi162Scf00504g00091 Petunia axillaris HOM05D001794 ORTHO05D007659 9.2e-06 55.1 34 76.5
PGR142G3307 Punica granatum HOM05D001794 ORTHO05D007659 9.2e-06 55.1 61 50.8
Hund02266 Selenicereus undatus HOM05D001794 ORTHO05D007659 9.2e-06 55.1 34 76.5


User provided reference genes

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