Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 4.1e-114 414.8 227 100.0
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 9.2e-106 387.1 227 93.0
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 5.1e-104 381.3 227 92.1
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 5.1e-104 381.3 227 92.1
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 5.1e-104 381.3 227 92.1
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 1.2e-100 370.2 229 90.0
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 2.6e-84 315.8 227 81.5
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 2.1e-81 306.2 232 78.4
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 4.6e-73 278.5 230 70.9
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 2.9e-67 259.2 228 70.2
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 5.1e-56 221.9 228 62.3
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 6.7e-56 221.5 229 64.2
BcaC01g03341 Brassica carinata HOM05D005697 ORTHO05D006951 1.6e-49 200.3 218 61.5
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 1.3e-46 190.7 225 55.6
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 3.7e-46 189.1 229 53.7
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 4.8e-46 188.7 226 55.8
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 4.8e-46 188.7 226 55.8
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 4.1e-45 185.7 227 57.7
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 1.2e-44 184.1 226 55.8
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 2.6e-44 183.0 224 55.4
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 7.7e-44 181.4 198 57.6
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 7.7e-44 181.4 226 54.4
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 2.5e-42 176.4 227 53.3
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 2.5e-42 176.4 211 53.6
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 4.2e-42 175.6 226 54.0
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 1.6e-41 173.7 226 52.2
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 4.8e-38 162.2 223 51.1
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 2.9e-35 152.9 198 55.6
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.7e-30 137.1 226 44.7
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 5.0e-27 125.6 235 44.7
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 2.6e-23 113.2 161 50.9
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 5.7e-23 112.1 188 47.9
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 1.3e-22 110.9 188 47.3
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 3.7e-22 109.4 200 44.5
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 3.7e-22 109.4 217 43.8
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 8.3e-22 108.2 201 44.8
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 8.3e-22 108.2 174 47.1
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 2.4e-21 106.7 178 46.1
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 3.1e-21 106.3 187 43.9
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 4.1e-21 105.9 195 43.6
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 5.4e-21 105.5 230 41.3
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 7.0e-21 105.1 237 38.4
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 1.2e-20 104.4 193 44.6
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 2.0e-20 103.6 171 43.9
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 2.0e-20 103.6 226 41.2
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 2.0e-20 103.6 258 38.8
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 3.5e-20 102.8 221 43.0
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 3.5e-20 102.8 222 41.4
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 5.9e-20 102.1 173 44.5
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 5.9e-20 102.1 195 45.6
C03p53500 Brassica napus HOM05D005697 ORTHO05D006951 7.7e-20 101.7 112 58.9
BolC3t17610H Brassica oleracea HOM05D005697 ORTHO05D006951 7.7e-20 101.7 112 58.9
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 1.0e-19 101.3 188 45.7
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 1.3e-19 100.9 227 41.0
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 1.3e-19 100.9 196 42.9
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 1.3e-19 100.9 199 42.2
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 1.3e-19 100.9 204 43.6
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 1.7e-19 100.5 99 59.6
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 1.7e-19 100.5 259 38.2
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.7e-19 100.5 259 37.8
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.3e-19 100.1 252 38.9
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.9e-19 99.8 252 37.7
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 6.6e-19 98.6 252 37.7
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 8.6e-19 98.2 220 38.2
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 1.9e-18 97.1 192 40.1
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 3.3e-18 96.3 196 40.3
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 3.3e-18 96.3 198 38.9
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 5.6e-18 95.5 242 39.3
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 5.6e-18 95.5 161 44.1
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 5.6e-18 95.5 168 41.1
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 9.5e-18 94.7 125 49.6
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 1.6e-17 94.0 230 39.1
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 2.1e-17 93.6 222 39.2
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 2.8e-17 93.2 113 53.1
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 3.6e-17 92.8 212 39.2
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 6.1e-17 92.0 218 41.7
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 6.1e-17 92.0 195 40.0
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 8.0e-17 91.7 212 38.2
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 1.0e-16 91.3 218 41.7
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 1.0e-16 91.3 168 42.9
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 1.4e-16 90.9 184 42.4
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 2.3e-16 90.1 208 39.9
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 8.9e-16 88.2 212 37.3
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 8.9e-16 88.2 225 39.1
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 8.9e-16 88.2 222 37.8
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 8.9e-16 88.2 229 35.8
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.2e-15 87.8 193 37.3
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 1.2e-15 87.8 179 39.7
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 2.6e-15 86.7 215 40.0
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 3.4e-15 86.3 178 38.8
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 7.5e-15 85.1 227 37.9
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 7.5e-15 85.1 206 37.9
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 1.3e-14 84.3 174 38.5
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 2.9e-14 83.2 116 46.6
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 2.9e-14 83.2 224 35.7
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 2.9e-14 83.2 215 39.5
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 3.7e-14 82.8 153 40.5
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 3.7e-14 82.8 166 38.6
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 8.3e-14 81.6 107 49.5
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 8.3e-14 81.6 181 36.5
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 8.3e-14 81.6 166 38.6
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 1.4e-13 80.9 194 39.7
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 1.4e-13 80.9 99 50.5
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 2.4e-13 80.1 113 46.0
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 3.2e-13 79.7 113 49.6
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 4.1e-13 79.3 187 36.4
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 7.0e-13 78.6 228 36.8
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 7.0e-13 78.6 214 35.5
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 9.2e-13 78.2 170 40.0
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 3.5e-12 76.3 165 37.0
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 5.9e-12 75.5 218 37.6
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 5.9e-12 75.5 202 38.1
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 2.3e-11 73.6 226 35.4
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 3.0e-11 73.2 196 34.2
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 3.9e-11 72.8 133 40.6
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 5.0e-11 72.4 178 36.5
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 6.6e-11 72.0 202 36.1
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 8.6e-11 71.6 205 34.1
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 8.6e-11 71.6 213 34.3
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 1.1e-10 71.2 175 42.9
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 2.5e-10 70.1 181 34.3
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 4.3e-10 69.3 202 34.2
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 4.3e-10 69.3 215 34.0
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 5.6e-10 68.9 193 32.6
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 2.1e-09 67.0 179 35.2
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 4.7e-09 65.9 106 45.3
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 1.0e-08 64.7 154 32.5
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 3.1e-08 63.2 234 34.2
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 5.8e-07 58.9 169 37.9


User provided reference genes

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