Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 1.8e-27 125.6 81 100.0
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 4.6e-23 110.9 74 98.6
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 1.5e-18 95.9 72 80.6
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 8.6e-14 80.1 71 62.0
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.9e-13 79.0 72 55.6
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 2.5e-13 78.6 94 55.3
BcaC02g09416 Brassica carinata HOM05D005842 ORTHO05D007077 2.5e-13 78.6 95 53.7
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 2.5e-13 78.6 72 56.9
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.6e-12 75.9 72 54.2
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 1.6e-12 75.9 72 54.2
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 2.1e-12 75.5 94 54.3
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 3.6e-12 74.7 70 54.3
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 3.6e-12 74.7 72 52.8
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 6.2e-12 73.9 72 54.2
C04p42360 Brassica napus HOM05D005842 ORTHO05D007077 6.2e-12 73.9 94 54.3
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 6.2e-12 73.9 70 52.9
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 8.1e-12 73.6 73 79.5
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 8.1e-12 73.6 73 79.5
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 8.1e-12 73.6 73 79.5
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 8.1e-12 73.6 73 79.5
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 1.4e-11 72.8 71 52.1
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 4.0e-11 71.2 72 51.4
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 8.9e-11 70.1 74 51.4
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 8.9e-11 70.1 70 52.9
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 8.9e-11 70.1 70 52.9
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 8.9e-11 70.1 74 51.4
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 1.5e-10 69.3 94 51.1
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 1.5e-10 69.3 94 51.1
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 1.5e-10 69.3 94 51.1
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 1.5e-10 69.3 73 49.3
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 1.5e-10 69.3 72 50.0
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 1.5e-10 69.3 74 48.6
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 2.6e-10 68.6 71 71.8
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 4.4e-10 67.8 71 70.4
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 4.4e-10 67.8 71 70.4
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 4.4e-10 67.8 73 46.6
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 4.4e-10 67.8 72 47.2
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 4.4e-10 67.8 70 51.4
Aa31LG9G4090 Aethionema arabicum HOM05D005842 ORTHO05D007077 5.8e-10 67.4 104 48.1
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 5.8e-10 67.4 95 51.6
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 5.8e-10 67.4 95 51.6
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 7.5e-10 67.0 71 52.1
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 7.5e-10 67.0 71 52.1
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 7.5e-10 67.0 71 50.7
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.3e-09 66.2 70 60.0
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 1.7e-09 65.9 70 48.6
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 2.9e-09 65.1 74 47.3
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 3.7e-09 64.7 76 51.3
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 3.7e-09 64.7 76 51.3
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 3.7e-09 64.7 76 51.3
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 3.7e-09 64.7 76 51.3
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 3.7e-09 64.7 76 51.3
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 3.7e-09 64.7 76 51.3
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 3.7e-09 64.7 76 51.3
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 3.7e-09 64.7 76 51.3
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 3.7e-09 64.7 70 50.0
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 4.9e-09 64.3 75 46.7
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 4.9e-09 64.3 75 46.7
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 6.4e-09 63.9 75 50.7
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 1.1e-08 63.2 71 50.7
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 1.1e-08 63.2 64 51.6
Sopen09g034020 Solanum pennellii HOM05D005842 ORTHO05D007077 1.9e-08 62.4 75 49.3
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 3.2e-08 61.6 75 44.0
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 3.2e-08 61.6 70 45.7
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 4.1e-08 61.2 74 62.2
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 4.1e-08 61.2 75 49.3
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 9.2e-08 60.1 75 45.3
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 9.2e-08 60.1 76 48.7
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 1.2e-07 59.7 70 57.1
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 1.2e-07 59.7 70 57.1
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 1.2e-07 59.7 70 58.6
AL7G43170 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 2.1e-07 58.9 94 46.8
BcaC07g37350 Brassica carinata HOM05D005842 ORTHO05D007077 2.1e-07 58.9 32 84.4
Thhalv10026478m.g Eutrema salsugineum HOM05D005842 ORTHO05D007077 2.1e-07 58.9 32 84.4
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 2.1e-07 58.9 74 55.4
CARHR219200 Cardamine hirsuta HOM05D005842 ORTHO05D007077 3.5e-07 58.2 32 84.4
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 6.0e-07 57.4 64 48.4
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 7.8e-07 57.0 60 48.3
A08p06740 Brassica napus HOM05D005842 ORTHO05D007077 7.8e-07 57.0 33 84.8
C08p07940 Brassica napus HOM05D005842 ORTHO05D007077 7.8e-07 57.0 33 84.8
BolC8t47646H Brassica oleracea HOM05D005842 ORTHO05D007077 7.8e-07 57.0 33 84.8
BraA08t32692Z Brassica rapa HOM05D005842 ORTHO05D007077 7.8e-07 57.0 33 84.8
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 7.8e-07 57.0 70 60.0
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 1.0e-06 56.6 62 48.4
BcaB04g17686 Brassica carinata HOM05D005842 ORTHO05D007077 1.0e-06 56.6 32 81.2
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 1.0e-06 56.6 70 65.7
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 1.0e-06 56.6 70 65.7
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.0e-06 56.6 70 60.0
Lalb_Chr19g0128561 Lupinus albus HOM05D005842 ORTHO05D007077 1.3e-06 56.2 63 49.2
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.3e-06 56.2 68 60.3
AT4G13560 Arabidopsis thaliana HOM05D005842 ORTHO05D007077 1.7e-06 55.8 32 81.2
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 1.7e-06 55.8 32 78.1
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 2.3e-06 55.5 62 46.8
Duzib151G0923 Durio zibethinus HOM05D005842 ORTHO05D007077 2.3e-06 55.5 32 78.1
A03p43520 Brassica napus HOM05D005842 ORTHO05D007077 3.0e-06 55.1 59 76.3
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 3.0e-06 55.1 74 52.7
arahy.Tifrunner.gnm1.ann1.GMD4I9 Arachis hypogaea HOM05D005842 ORTHO05D007077 3.9e-06 54.7 70 44.3
Lsat_1_v5_gn_2_41500 Lactuca sativa HOM05D005842 ORTHO05D007077 3.9e-06 54.7 74 63.5
Carub.0007s2898 Capsella rubella HOM05D005842 ORTHO05D007077 5.1e-06 54.3 32 78.1
Lalb_Chr03g0036861 Lupinus albus HOM05D005842 ORTHO05D007077 5.1e-06 54.3 62 46.8
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 6.6e-06 53.9 33 72.7
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 6.6e-06 53.9 74 54.1
AL3G39590 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 8.6e-06 53.5 71 67.6
arahy.Tifrunner.gnm1.ann1.JU0LD9 Arachis hypogaea HOM05D005842 ORTHO05D007077 8.6e-06 53.5 70 42.9
Sp3g22000 Schrenkiella parvula HOM05D005842 ORTHO05D007077 8.6e-06 53.5 71 67.6


User provided reference genes

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