Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26594 Brassica carinata HOM05D006670 ORTHO05D008715 2.8e-149 531.9 277 100.0
A07p08240 Brassica napus HOM05D006670 ORTHO05D008715 3.5e-139 498.4 273 94.9
BraA07t28607Z Brassica rapa HOM05D006670 ORTHO05D008715 8.5e-138 493.8 273 94.5
BolC7t41764H Brassica oleracea HOM05D006670 ORTHO05D008715 5.5e-137 491.1 273 94.1
BcaC06g35628 Brassica carinata HOM05D006670 ORTHO05D008715 1.4e-135 486.5 273 93.4
C07p12780 Brassica napus HOM05D006670 ORTHO05D008715 1.4e-135 486.5 273 93.4
Thhalv10002635m.g Eutrema salsugineum HOM05D006670 ORTHO05D008715 1.8e-132 476.1 277 88.1
AL3G39350 Arabidopsis lyrata HOM05D006670 ORTHO05D008715 1.2e-131 473.4 277 88.1
Carub.0003s2449 Capsella rubella HOM05D006670 ORTHO05D008715 2.0e-131 472.6 277 87.7
CARHR100200 Cardamine hirsuta HOM05D006670 ORTHO05D008715 3.5e-131 471.9 277 87.4
Sp3g21930 Schrenkiella parvula HOM05D006670 ORTHO05D008715 3.5e-131 471.9 277 87.4
AT3G24030 Arabidopsis thaliana HOM05D006670 ORTHO05D008715 1.0e-130 470.3 277 86.6
THA.LOC104808732 Tarenaya hassleriana HOM05D006670 ORTHO05D008715 2.1e-112 409.5 275 76.7
Haze_11539 Corylus avellana HOM05D006670 ORTHO05D008715 3.7e-109 398.7 272 73.5
Dinv27152 Davidia involucrata HOM05D006670 ORTHO05D008715 1.9e-108 396.4 268 73.5
Cfa014868 Carpinus fangiana HOM05D006670 ORTHO05D008715 7.1e-108 394.4 272 73.2
Manes.15G049800 Manihot esculenta HOM05D006670 ORTHO05D008715 9.2e-108 394.0 268 72.0
HanXRQChr01g0022661 Helianthus annuus HOM05D006670 ORTHO05D008715 6.0e-107 391.3 273 70.0
CSS0048127 Camellia sinensis var. sinensis HOM05D006670 ORTHO05D008715 3.0e-106 389.0 266 71.8
CSS0047689 Camellia sinensis var. sinensis HOM05D006670 ORTHO05D008715 3.9e-106 388.7 271 70.5
CiPaw.01G205600 Carya illinoinensis HOM05D006670 ORTHO05D008715 3.9e-106 388.7 270 71.1
Potri.003G174400 Populus trichocarpa HOM05D006670 ORTHO05D008715 6.6e-106 387.9 270 71.1
CANSAT78G1187 Cannabis sativa HOM05D006670 ORTHO05D008715 1.9e-105 386.3 267 71.9
Aqoxy2G03824 Aquilegia oxysepala HOM05D006670 ORTHO05D008715 2.5e-105 386.0 276 68.8
Prupe.1G056900 Prunus persica HOM05D006670 ORTHO05D008715 3.3e-105 385.6 284 70.4
RcHm_v2.0_Chr4g0396631 Rosa chinensis HOM05D006670 ORTHO05D008715 3.3e-105 385.6 276 70.7
QL06p022765 Quercus lobata HOM05D006670 ORTHO05D008715 7.3e-105 384.4 273 70.3
Duzib212G0230 Durio zibethinus HOM05D006670 ORTHO05D008715 1.2e-104 383.6 270 70.4
FAN22G1637 Fragaria x ananassa HOM05D006670 ORTHO05D008715 1.6e-104 383.3 268 72.0
Ciclev10005609m.g Citrus clementina HOM05D006670 ORTHO05D008715 2.1e-104 382.9 272 70.6
Thecc.04G214700 Theobroma cacao HOM05D006670 ORTHO05D008715 3.6e-104 382.1 266 71.1
Lsat_1_v5_gn_0_4721 Lactuca sativa HOM05D006670 ORTHO05D008715 6.2e-104 381.3 264 70.8
MD13G1229700 Malus domestica HOM05D006670 ORTHO05D008715 6.2e-104 381.3 268 73.1
Sabra03G0127900 Salix brachista HOM05D006670 ORTHO05D008715 6.2e-104 381.3 270 70.4
FvH4_4g05510 Fragaria vesca HOM05D006670 ORTHO05D008715 8.1e-104 380.9 268 72.0
MBI10_g16834_MAGBIO Magnolia biondii HOM05D006670 ORTHO05D008715 8.1e-104 380.9 268 70.5
Manes.03G154700 Manihot esculenta HOM05D006670 ORTHO05D008715 8.1e-104 380.9 269 71.0
TAR636G1307 Trochodendron aralioides HOM05D006670 ORTHO05D008715 1.1e-103 380.6 270 68.5
FAN12G2738 Fragaria x ananassa HOM05D006670 ORTHO05D008715 3.1e-103 379.0 268 71.6
PSO017G1158 Papaver somniferum HOM05D006670 ORTHO05D008715 1.2e-102 377.1 274 68.6
COL.COLO4_05724 Corchorus olitorius HOM05D006670 ORTHO05D008715 2.6e-102 375.9 268 69.4
Cpa.g.sc59.72 Carica papaya HOM05D006670 ORTHO05D008715 3.4e-102 375.6 268 71.3
FAN07G0632 Fragaria x ananassa HOM05D006670 ORTHO05D008715 9.9e-102 374.0 268 70.9
PSO063G6527 Papaver somniferum HOM05D006670 ORTHO05D008715 9.9e-102 374.0 274 67.9
MELO3C006346.2 Cucumis melo HOM05D006670 ORTHO05D008715 1.3e-101 373.6 280 68.2
CsaV3_3G011380 Cucumis sativus L. HOM05D006670 ORTHO05D008715 3.7e-101 372.1 280 67.9
Sc13g0002920 Simmondsia chinensis HOM05D006670 ORTHO05D008715 4.9e-101 371.7 267 70.0
Rhsim09G0046600 Rhododendron simsii HOM05D006670 ORTHO05D008715 6.4e-101 371.3 266 68.8
PGR083G1840 Punica granatum HOM05D006670 ORTHO05D008715 1.1e-100 370.5 267 69.3
ECA248G0542 Erigeron canadensis HOM05D006670 ORTHO05D008715 1.4e-100 370.2 273 66.7
ClCG05G003670 Citrullus lanatus HOM05D006670 ORTHO05D008715 2.4e-100 369.4 268 70.1
Sed0004390 Sechium edule HOM05D006670 ORTHO05D008715 3.2e-100 369.0 270 70.4
Rhsim09G0047600 Rhododendron simsii HOM05D006670 ORTHO05D008715 2.7e-99 365.9 266 66.5
DCAR_024309 Daucus carota HOM05D006670 ORTHO05D008715 3.5e-99 365.5 270 66.3
Gorai.011G163000 Gossypium raimondii HOM05D006670 ORTHO05D008715 1.3e-98 363.6 270 67.4
Gohir.D10G145900 Gossypium hirsutum HOM05D006670 ORTHO05D008715 3.9e-98 362.1 270 67.0
Lju414A3G25 Lonicera japonica HOM05D006670 ORTHO05D008715 8.6e-98 360.9 241 78.0
AUR62035928 Chenopodium quinoa HOM05D006670 ORTHO05D008715 1.9e-97 359.8 270 67.8
Lalb_Chr01g0011161 Lupinus albus HOM05D006670 ORTHO05D008715 1.9e-97 359.8 269 67.7
Gohir.A10G120500 Gossypium hirsutum HOM05D006670 ORTHO05D008715 3.3e-97 359.0 270 66.3
arahy.Tifrunner.gnm1.ann1.M1QCRY Arachis hypogaea HOM05D006670 ORTHO05D008715 4.3e-97 358.6 273 67.8
Hund24851 Selenicereus undatus HOM05D006670 ORTHO05D008715 5.6e-97 358.2 269 67.7
arahy.Tifrunner.gnm1.ann1.CI907D Arachis hypogaea HOM05D006670 ORTHO05D008715 1.6e-96 356.7 273 67.4
AUR62035321 Chenopodium quinoa HOM05D006670 ORTHO05D008715 4.7e-96 355.1 270 65.9
Atru.chr4.1814 Acer truncatum HOM05D006670 ORTHO05D008715 1.1e-95 354.0 282 66.0
TPR.G11296 Trifolium pratense HOM05D006670 ORTHO05D008715 2.4e-95 352.8 277 65.0
vmacro00519 Vaccinium macrocarpon HOM05D006670 ORTHO05D008715 4.0e-95 352.1 321 57.6
Psat6g047400 Pisum sativum HOM05D006670 ORTHO05D008715 5.2e-95 351.7 276 65.6
Ca_11808_v3 Cicer arietinum L. HOM05D006670 ORTHO05D008715 6.8e-95 351.3 270 67.8
ATR0787G198 Amborella trichopoda HOM05D006670 ORTHO05D008715 1.2e-94 350.5 273 62.6
Sopen05g031980 Solanum pennellii HOM05D006670 ORTHO05D008715 1.2e-94 350.5 268 65.7
Glyma.10G127400 Glycine max HOM05D006670 ORTHO05D008715 1.3e-93 347.1 282 63.8
Phvul.007G238000 Phaseolus vulgaris HOM05D006670 ORTHO05D008715 1.3e-93 347.1 269 65.8
Eucgr.H02870 Eucalyptus grandis HOM05D006670 ORTHO05D008715 2.2e-93 346.3 267 67.4
Lj6g0025132 Lotus japonicus HOM05D006670 ORTHO05D008715 2.2e-93 346.3 278 63.7
Actinidia25088 Actinidia chinensis HOM05D006670 ORTHO05D008715 3.8e-93 345.5 243 72.8
Ah.04g153360 Amaranthus hybridus HOM05D006670 ORTHO05D008715 4.9e-93 345.1 264 65.5
Peaxi162Scf00536g00711 Petunia axillaris HOM05D006670 ORTHO05D008715 1.4e-92 343.6 268 63.4
MSTRG.4202 Avicennia marina HOM05D006670 ORTHO05D008715 4.2e-92 342.0 270 62.2
VMungo0720G2028 Vigna mungo HOM05D006670 ORTHO05D008715 7.1e-92 341.3 273 64.5
SGA_v2.0_scaffold57G20164 Striga asiatica HOM05D006670 ORTHO05D008715 1.6e-91 340.1 268 62.3
Migut.G00614 Erythranthe guttata HOM05D006670 ORTHO05D008715 2.1e-91 339.7 269 64.7
Medtr1g046510 Medicago truncatula HOM05D006670 ORTHO05D008715 5.1e-90 335.1 277 63.2
Medtr1g046790 Medicago truncatula HOM05D006670 ORTHO05D008715 7.3e-89 331.3 277 62.5
Nn3g19866 Nelumbo nucifera HOM05D006670 ORTHO05D008715 6.2e-88 328.2 234 68.8
SEGI_39672 Sequoiadendron giganteum HOM05D006670 ORTHO05D008715 3.1e-87 325.9 275 59.3
Zm00001eb341310 Zea mays HOM05D006670 ORTHO05D008715 4.4e-86 322.0 267 63.7
SHI00002 Sapria himalayana HOM05D006670 ORTHO05D008715 1.9e-84 316.6 288 57.6
Nitab4.5_0001769g0060 Nicotiana tabacum HOM05D006670 ORTHO05D008715 2.4e-84 316.2 267 61.0
Pp3c9_10780 Physcomitrium patens HOM05D006670 ORTHO05D008715 4.2e-84 315.5 268 57.1
Mapoly0087s0052 Marchantia polymorpha HOM05D006670 ORTHO05D008715 5.4e-84 315.1 269 59.1
GSVIVG01029032001 Vitis vinifera HOM05D006670 ORTHO05D008715 5.4e-84 315.1 225 70.2
Nitab4.5_0012036g0010 Nicotiana tabacum HOM05D006670 ORTHO05D008715 3.5e-83 312.4 267 59.6
PGSC0003DMG400027217 Solanum tuberosum HOM05D006670 ORTHO05D008715 3.5e-83 312.4 240 66.2
Cc03_g07080 Coffea canephora HOM05D006670 ORTHO05D008715 1.5e-81 307.0 224 67.4
CDE01G0405 Ceratophyllum demersum HOM05D007853 ORTHO05D009873 5.6e-81 305.1 253 61.7
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 7.6e-78 294.7 258 56.6
Oeu022324.1 Olea europaea HOM05D006670 ORTHO05D008715 9.9e-78 294.3 240 61.2
unitig_747.g21700 Utricularia gibba HOM05D006670 ORTHO05D008715 1.1e-76 290.8 388 44.3
SMO137G0262 Selaginella moellendorffii HOM05D006670 ORTHO05D008715 3.5e-75 285.8 261 57.9
RhsimUnG0181700 Rhododendron simsii HOM05D006670 ORTHO05D008715 1.1e-71 274.2 266 53.8
SMO134G0250 Selaginella moellendorffii HOM05D006670 ORTHO05D008715 6.7e-66 255.0 271 51.7
EL10Ac3g06772 Beta vulgaris HOM05D006670 ORTHO05D008715 1.1e-65 254.2 230 57.8
Cre06.g255350 Chlamydomonas reinhardtii HOM05D006670 ORTHO05D008715 5.9e-62 241.9 269 48.0
Dinv44414 Davidia involucrata HOM05D006670 ORTHO05D008715 5.7e-57 225.3 149 75.8
Psat7g020640 Pisum sativum HOM05D006670 ORTHO05D008715 3.4e-54 216.1 183 63.9
Psat4g139560 Pisum sativum HOM05D006670 ORTHO05D000720 2.1e-51 206.8 220 53.6
Lju414A3G24 Lonicera japonica HOM05D006670 ORTHO05D008715 6.7e-50 201.8 167 67.1
Rhsim09G0047300 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.9e-47 191.8 140 65.0
Psat0s5229g0080 Pisum sativum HOM05D006670 ORTHO05D006513 2.0e-46 190.3 217 50.7
CAN.G305.17 Capsicum annuum HOM05D006670 ORTHO05D008715 6.5e-45 185.3 132 65.2
Potri.001G053900 Populus trichocarpa HOM05D006670 ORTHO05D008715 1.7e-40 170.6 120 70.8
Os01g0363600 Oryza sativa ssp. japonica HOM05D006670 ORTHO05D008715 1.2e-38 164.5 141 56.7
CAN.G305.16 Capsicum annuum HOM05D006670 ORTHO05D008715 2.0e-38 163.7 138 61.6
Psat4g139640 Pisum sativum HOM05D006670 ORTHO05D002176 3.7e-32 142.9 146 56.2
Migut.G00612 Erythranthe guttata HOM05D006670 ORTHO05D008715 8.5e-29 131.7 128 59.4
Lsat_1_v5_gn_5_180420 Lactuca sativa HOM05D006670 ORTHO05D008715 2.5e-28 130.2 119 55.5
Sabra01G0038200 Salix brachista HOM05D006670 ORTHO05D349611 1.4e-23 114.4 211 37.4
PGSC0003DMG402027165 Solanum tuberosum HOM05D006670 ORTHO05D008715 7.0e-23 112.1 80 67.5
FAN17G2931 Fragaria x ananassa HOM05D006670 ORTHO05D008715 4.5e-22 109.4 80 71.2
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 6.5e-21 105.5 248 31.5
Cpa.g.sc59.70 Carica papaya HOM05D006670 ORTHO05D119377 8.6e-13 78.6 108 43.5
Psat5g196680 Pisum sativum HOM05D006670 ORTHO05D008715 1.5e-09 67.8 48 62.5


User provided reference genes

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