Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26574 Brassica carinata HOM05D000814 ORTHO05D012322 5.5e-44 180.6 95 100.0
C06p28020 Brassica napus HOM05D000814 ORTHO05D012322 4.8e-16 87.8 70 68.6
BolC6t37965H Brassica oleracea HOM05D000814 ORTHO05D012322 1.4e-15 86.3 61 77.0
C08p25640 Brassica napus HOM05D000814 ORTHO05D012322 1.8e-15 85.9 58 79.3
BcaC04g21236 Brassica carinata HOM05D000814 ORTHO05D012322 5.4e-15 84.3 61 73.8
C09p34020 Brassica napus HOM05D000814 ORTHO05D012322 1.2e-14 83.2 58 75.9
BolC9t56240H Brassica oleracea HOM05D000814 ORTHO05D012322 1.2e-14 83.2 58 75.9
C02p51170 Brassica napus HOM05D000814 ORTHO05D012322 2.0e-14 82.4 63 71.4
BcaB05g22063 Brassica carinata HOM05D000814 ORTHO05D012322 2.6e-09 65.5 46 80.4
Aa31LG8G9300 Aethionema arabicum HOM05D000814 ORTHO05D001161 4.9e-08 61.2 48 72.9
Thhalv10025120m.g Eutrema salsugineum HOM05D000814 ORTHO05D001161 8.3e-08 60.5 46 73.9
PSO170G3967 Papaver somniferum HOM05D000814 ORTHO05D001161 8.3e-08 60.5 46 73.9
Rhsim02G0028500 Rhododendron simsii HOM05D000814 ORTHO05D001161 8.3e-08 60.5 48 72.9
C01p28530 Brassica napus HOM05D000814 ORTHO05D001161 1.1e-07 60.1 48 70.8
FvH4_4g01030 Fragaria vesca HOM05D000814 ORTHO05D001161 1.4e-07 59.7 48 70.8
FAN12G0724 Fragaria x ananassa HOM05D000814 ORTHO05D001161 1.4e-07 59.7 48 70.8
FAN17G2274 Fragaria x ananassa HOM05D000814 ORTHO05D001161 1.4e-07 59.7 48 70.8
FAN22G0403 Fragaria x ananassa HOM05D000814 ORTHO05D001161 1.4e-07 59.7 48 70.8
Aa31LG9G2630 Aethionema arabicum HOM05D000814 ORTHO05D001161 1.8e-07 59.3 49 71.4
MSTRG.4058 Avicennia marina HOM05D000814 ORTHO05D001161 1.8e-07 59.3 49 69.4
BcaC09g49202 Brassica carinata HOM05D000814 ORTHO05D001161 1.8e-07 59.3 49 69.4
BcaC09g50150 Brassica carinata HOM05D000814 ORTHO05D001161 1.8e-07 59.3 46 71.7
BcaNung00340 Brassica carinata HOM05D000814 ORTHO05D001161 1.8e-07 59.3 46 71.7
C01p41440 Brassica napus HOM05D000814 ORTHO05D001161 1.8e-07 59.3 49 69.4
BolC1t02774H Brassica oleracea HOM05D000814 ORTHO05D001161 1.8e-07 59.3 46 71.7
BolC1t04102H Brassica oleracea HOM05D000814 ORTHO05D001161 1.8e-07 59.3 49 69.4
BraA01t02201Z Brassica rapa HOM05D000814 ORTHO05D001161 1.8e-07 59.3 46 71.7
CAN.G1402.16 Capsicum annuum HOM05D000814 ORTHO05D001161 1.8e-07 59.3 48 70.8
Dinv14039 Davidia involucrata HOM05D000814 ORTHO05D001161 1.8e-07 59.3 48 70.8
Nn6g34154 Nelumbo nucifera HOM05D000814 ORTHO05D001161 1.8e-07 59.3 46 71.7
Solyc09g082580.4 Solanum lycopersicum HOM05D000814 ORTHO05D001161 1.8e-07 59.3 48 70.8
Sopen09g031440 Solanum pennellii HOM05D000814 ORTHO05D001161 1.8e-07 59.3 48 70.8
PGSC0003DMG400006453 Solanum tuberosum HOM05D000814 ORTHO05D001161 1.8e-07 59.3 48 70.8
Sp7g12850 Schrenkiella parvula HOM05D000814 ORTHO05D001161 2.4e-07 58.9 45 73.3
Thecc.04G237800 Theobroma cacao HOM05D000814 ORTHO05D001161 2.4e-07 58.9 45 73.3
TAR362G1125 Trochodendron aralioides HOM05D000814 ORTHO05D001161 2.4e-07 58.9 49 69.4
CiPaw.01G196000 Carya illinoinensis HOM05D000814 ORTHO05D001161 3.1e-07 58.5 48 68.8
Manes.15G032400 Manihot esculenta HOM05D000814 ORTHO05D001161 3.1e-07 58.5 49 67.3
PSO210G6339 Papaver somniferum HOM05D000814 ORTHO05D001161 3.1e-07 58.5 48 70.8
Potri.008G157000 Populus trichocarpa HOM05D000814 ORTHO05D001161 3.1e-07 58.5 48 68.8
Potri.010G082400 Populus trichocarpa HOM05D000814 ORTHO05D001161 3.1e-07 58.5 48 68.8
Sabra10G0060800 Salix brachista HOM05D000814 ORTHO05D001161 3.1e-07 58.5 48 68.8
AL7G41200 Arabidopsis lyrata HOM05D000814 ORTHO05D001161 4.1e-07 58.2 48 70.8
AT4G14740 Arabidopsis thaliana HOM05D000814 ORTHO05D001161 4.1e-07 58.2 48 70.8
arahy.Tifrunner.gnm1.ann1.C08MUV Arachis hypogaea HOM05D000814 ORTHO05D001161 4.1e-07 58.2 48 68.8
arahy.Tifrunner.gnm1.ann1.KD0YSM Arachis hypogaea HOM05D000814 ORTHO05D001161 4.1e-07 58.2 48 68.8
A01p32400 Brassica napus HOM05D000814 ORTHO05D001161 4.1e-07 58.2 49 67.3
BraA01t03367Z Brassica rapa HOM05D000814 ORTHO05D001161 4.1e-07 58.2 49 67.3
Carub.0007s2742 Capsella rubella HOM05D000814 ORTHO05D001161 4.1e-07 58.2 48 70.8
COL.COLO4_21557 Corchorus olitorius HOM05D000814 ORTHO05D001161 4.1e-07 58.2 46 69.6
Manes.03G173800 Manihot esculenta HOM05D000814 ORTHO05D001161 4.1e-07 58.2 49 67.3
A01p22870 Brassica napus HOM05D000814 ORTHO05D001161 5.4e-07 57.8 45 71.1
CARHR221220 Cardamine hirsuta HOM05D000814 ORTHO05D001161 5.4e-07 57.8 45 73.3
Cpa.g.sc44.115 Carica papaya HOM05D000814 ORTHO05D001161 5.4e-07 57.8 46 69.6
GSVIVG01018032001 Vitis vinifera HOM05D000814 ORTHO05D001161 5.4e-07 57.8 48 68.8
CARHR098670 Cardamine hirsuta HOM05D000814 ORTHO05D001161 7.0e-07 57.4 49 67.3
Cc03_g04210 Coffea canephora HOM05D000814 ORTHO05D001161 7.0e-07 57.4 45 71.1
Lj3A728T54 Lonicera japonica HOM05D000814 ORTHO05D001161 7.0e-07 57.4 48 66.7
MD16G1198700 Malus domestica HOM05D000814 ORTHO05D001161 7.0e-07 57.4 49 67.3
Oeu017776.1 Olea europaea HOM05D000814 ORTHO05D001161 7.0e-07 57.4 49 69.4
Sp3g20510 Schrenkiella parvula HOM05D000814 ORTHO05D001161 7.0e-07 57.4 49 67.3
Actinidia08465 Actinidia chinensis HOM05D000814 ORTHO05D001161 9.2e-07 57.0 49 69.4
Aqoxy2G03454 Aquilegia oxysepala HOM05D000814 ORTHO05D001161 9.2e-07 57.0 48 66.7
Cfa008454 Carpinus fangiana HOM05D000814 ORTHO05D001161 9.2e-07 57.0 48 66.7
Glyma.10G244600 Glycine max HOM05D000814 ORTHO05D001161 9.2e-07 57.0 44 72.7
Glyma.20G149800 Glycine max HOM05D000814 ORTHO05D001161 9.2e-07 57.0 49 65.3
Lalb_Chr19g0127961 Lupinus albus HOM05D000814 ORTHO05D001161 9.2e-07 57.0 46 69.6
RcHm_v2.0_Chr4g0387611 Rosa chinensis HOM05D000814 ORTHO05D001161 9.2e-07 57.0 48 68.8
vmacro15368 Vaccinium macrocarpon HOM05D000814 ORTHO05D001161 9.2e-07 57.0 49 69.4
Atru.chr4.2404 Acer truncatum HOM05D000814 ORTHO05D001161 1.2e-06 56.6 49 65.3
Atru.ctg752_3.13 Acer truncatum HOM05D000814 ORTHO05D001161 1.2e-06 56.6 49 65.3
MSTRG.9953 Avicennia marina HOM05D000814 ORTHO05D001161 1.2e-06 56.6 46 67.4
BcaB04g20499 Brassica carinata HOM05D000814 ORTHO05D001161 1.2e-06 56.6 48 66.7
CSS0017644 Camellia sinensis var. sinensis HOM05D000814 ORTHO05D001161 1.2e-06 56.6 49 67.3
Duzib151G0539 Durio zibethinus HOM05D000814 ORTHO05D001161 1.2e-06 56.6 46 67.4
Duzib151G1183 Durio zibethinus HOM05D000814 ORTHO05D001161 1.2e-06 56.6 46 67.4
Migut.G00379 Erythranthe guttata HOM05D000814 ORTHO05D001161 1.2e-06 56.6 49 65.3
Migut.O00826 Erythranthe guttata HOM05D000814 ORTHO05D001161 1.2e-06 56.6 49 65.3
Oeu064252.1 Olea europaea HOM05D000814 ORTHO05D001161 1.2e-06 56.6 49 69.4
PGR142G2218 Punica granatum HOM05D000814 ORTHO05D001161 1.2e-06 56.6 49 65.3
VMungo0720G1142 Vigna mungo HOM05D000814 ORTHO05D001161 1.2e-06 56.6 49 67.3
arahy.Tifrunner.gnm1.ann1.D7FRIU Arachis hypogaea HOM05D000814 ORTHO05D001161 1.6e-06 56.2 48 66.7
arahy.Tifrunner.gnm1.ann1.UA24XB Arachis hypogaea HOM05D000814 ORTHO05D001161 1.6e-06 56.2 48 66.7
MD13G1198600 Malus domestica HOM05D000814 ORTHO05D001161 1.6e-06 56.2 48 66.7
Nn1g02430 Nelumbo nucifera HOM05D000814 ORTHO05D001161 1.6e-06 56.2 45 68.9
Peaxi162Scf00316g00086 Petunia axillaris HOM05D000814 ORTHO05D001161 1.6e-06 56.2 48 68.8
Prupe.1G020300 Prunus persica HOM05D000814 ORTHO05D001161 1.6e-06 56.2 48 66.7
Actinidia04516 Actinidia chinensis HOM05D000814 ORTHO05D001161 2.0e-06 55.8 48 66.7
Actinidia18530 Actinidia chinensis HOM05D000814 ORTHO05D001161 2.0e-06 55.8 49 67.3
AL3G37130 Arabidopsis lyrata HOM05D000814 ORTHO05D001161 2.0e-06 55.8 45 68.9
AT3G22810 Arabidopsis thaliana HOM05D000814 ORTHO05D001161 2.0e-06 55.8 45 68.9
arahy.Tifrunner.gnm1.ann1.0LH7PF Arachis hypogaea HOM05D000814 ORTHO05D001161 2.0e-06 55.8 45 71.1
MSTRG.18259 Avicennia marina HOM05D000814 ORTHO05D001161 2.0e-06 55.8 55 56.4
BcaC08g45176 Brassica carinata HOM05D000814 ORTHO05D012322 2.0e-06 55.8 43 74.4
BolC2t11208H Brassica oleracea HOM05D000814 ORTHO05D012322 2.0e-06 55.8 43 74.4
CSS0015568 Camellia sinensis var. sinensis HOM05D000814 ORTHO05D001161 2.0e-06 55.8 48 66.7
CANSAT78G1347 Cannabis sativa HOM05D000814 ORTHO05D001161 2.0e-06 55.8 48 68.8
Carub.0003s2293 Capsella rubella HOM05D000814 ORTHO05D001161 2.0e-06 55.8 45 68.9
CiPaw.02G121700 Carya illinoinensis HOM05D000814 ORTHO05D001161 2.0e-06 55.8 48 64.6
Ciclev10004842m.g Citrus clementina HOM05D000814 ORTHO05D001161 2.0e-06 55.8 49 65.3
Duzib212G0055 Durio zibethinus HOM05D000814 ORTHO05D001161 2.0e-06 55.8 46 65.2
Nitab4.5_0000090g0360 Nicotiana tabacum HOM05D000814 ORTHO05D001161 2.0e-06 55.8 46 69.6
Nitab4.5_0001713g0020 Nicotiana tabacum HOM05D000814 ORTHO05D001161 2.0e-06 55.8 46 69.6
VMungo0720G2520 Vigna mungo HOM05D000814 ORTHO05D001161 2.0e-06 55.8 48 64.6
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 2.7e-06 55.5 64 56.2
Lalb_Chr03g0037451 Lupinus albus HOM05D000814 ORTHO05D001161 2.7e-06 55.5 46 67.4
TAR636G2321 Trochodendron aralioides HOM05D000814 ORTHO05D001161 2.7e-06 55.5 48 66.7
Actinidia40122 Actinidia chinensis HOM05D000814 ORTHO05D001161 3.5e-06 55.1 46 67.4
Haze_11228 Corylus avellana HOM05D000814 ORTHO05D001161 3.5e-06 55.1 48 66.7
Glyma.02G005100 Glycine max HOM05D000814 ORTHO05D001161 3.5e-06 55.1 48 66.7
Phvul.007G061200 Phaseolus vulgaris HOM05D000814 ORTHO05D001161 3.5e-06 55.1 46 65.2
Phvul.007G277900 Phaseolus vulgaris HOM05D000814 ORTHO05D001161 3.5e-06 55.1 48 66.7
QL06p001188 Quercus lobata HOM05D000814 ORTHO05D001161 3.5e-06 55.1 48 66.7
Rhsim04G0197800 Rhododendron simsii HOM05D000814 ORTHO05D001161 3.5e-06 55.1 48 64.6
Rhsim04G0197900 Rhododendron simsii HOM05D000814 ORTHO05D001161 3.5e-06 55.1 48 64.6
Sabra08G0119500 Salix brachista HOM05D000814 ORTHO05D001161 3.5e-06 55.1 48 64.6
vmacro02603 Vaccinium macrocarpon HOM05D000814 ORTHO05D001161 3.5e-06 55.1 48 62.5
BcaB04g18256 Brassica carinata HOM05D000814 ORTHO05D001161 4.5e-06 54.7 44 70.5
Cpa.g.sc52.111 Carica papaya HOM05D000814 ORTHO05D001161 4.5e-06 54.7 46 67.4
Ca_10857_v3 Cicer arietinum L. HOM05D000814 ORTHO05D001161 4.5e-06 54.7 48 64.6
Gohir.D09G221000 Gossypium hirsutum HOM05D000814 ORTHO05D001161 4.5e-06 54.7 58 56.9
Gorai.006G242000 Gossypium raimondii HOM05D000814 ORTHO05D001161 4.5e-06 54.7 58 56.9
Lj6g0007591 Lotus japonicus HOM05D000814 ORTHO05D001161 4.5e-06 54.7 48 64.6
SalBow3G0121 Salvia bowleyana HOM05D000814 ORTHO05D001161 4.5e-06 54.7 49 65.3
Thecc.01G272800 Theobroma cacao HOM05D000814 ORTHO05D001161 4.5e-06 54.7 48 62.5
BcaC03g17188 Brassica carinata HOM05D000814 ORTHO05D012322 5.9e-06 54.3 43 72.1
BcaC06g31674 Brassica carinata HOM05D000814 ORTHO05D001161 5.9e-06 54.3 48 62.5
BcaC07g37846 Brassica carinata HOM05D000814 ORTHO05D001161 5.9e-06 54.3 44 70.5
A08p11400 Brassica napus HOM05D000814 ORTHO05D001161 5.9e-06 54.3 44 70.5
BolC8t48232H Brassica oleracea HOM05D000814 ORTHO05D001161 5.9e-06 54.3 44 70.5
BraA08t33133Z Brassica rapa HOM05D000814 ORTHO05D001161 5.9e-06 54.3 44 70.5
TWI12G0611 Tripterygium wilfordii HOM05D000814 ORTHO05D001161 5.9e-06 54.3 46 65.2
TAR365G1177 Trochodendron aralioides HOM05D000814 ORTHO05D001161 5.9e-06 54.3 46 65.2
unitig_32.g11723 Utricularia gibba HOM05D000814 ORTHO05D001161 5.9e-06 54.3 49 61.2
BcaB07g30553 Brassica carinata HOM05D000814 ORTHO05D001161 7.8e-06 53.9 48 62.5
Ca_12162_v3 Cicer arietinum L. HOM05D000814 ORTHO05D001161 7.8e-06 53.9 44 68.2
Dinv22510 Davidia involucrata HOM05D000814 ORTHO05D001161 7.8e-06 53.9 46 63.0
Eucgr.B01024 Eucalyptus grandis HOM05D000814 ORTHO05D001161 7.8e-06 53.9 46 63.0
Thhalv10003209m.g Eutrema salsugineum HOM05D000814 ORTHO05D001161 7.8e-06 53.9 48 62.5
Gohir.A09G218700 Gossypium hirsutum HOM05D000814 ORTHO05D001161 7.8e-06 53.9 49 65.3
Sp2g08670 Schrenkiella parvula HOM05D000814 ORTHO05D001161 7.8e-06 53.9 48 62.5


User provided reference genes

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