Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26526 Brassica carinata HOM05D000141 ORTHO05D039088 2.4e-50 201.8 98 100.0
C04p00370 Brassica napus HOM05D003197 ORTHO05D000780 1.2e-33 146.4 151 55.6
BolC4t21682H Brassica oleracea HOM05D003197 ORTHO05D000780 1.2e-33 146.4 151 55.6
BcaC02g12802 Brassica carinata HOM05D000141 ORTHO05D000780 4.5e-33 144.4 156 53.8
C04p00340 Brassica napus HOM05D003197 ORTHO05D003769 4.5e-33 144.4 156 53.8
BolC4t21676H Brassica oleracea HOM05D003197 ORTHO05D003769 4.5e-33 144.4 156 53.8
A05p00410 Brassica napus HOM05D003197 ORTHO05D003769 5.9e-33 144.1 157 53.5
BraA05t19039Z Brassica rapa HOM05D000141 ORTHO05D000780 5.9e-33 144.1 157 53.5
BcaB02g08765 Brassica carinata HOM05D000141 ORTHO05D000780 7.7e-33 143.7 154 52.6
Thhalv10001292m.g Eutrema salsugineum HOM05D000141 ORTHO05D000780 7.7e-33 143.7 151 53.0
AL4G47070 Arabidopsis lyrata HOM05D000141 ORTHO05D000780 1.6e-30 136.0 153 50.3
Sp4g29440 Schrenkiella parvula HOM05D000141 ORTHO05D000780 2.7e-30 135.2 90 74.4
AT2G47500 Arabidopsis thaliana HOM05D000141 ORTHO05D000780 6.7e-29 130.6 153 49.0
Carub.0004s3024 Capsella rubella HOM05D000141 ORTHO05D000780 2.0e-28 129.0 73 80.8
CARHR142900 Cardamine hirsuta HOM05D000141 ORTHO05D000780 3.7e-27 124.8 146 50.7
Aa31LG1G28810 Aethionema arabicum HOM05D000141 ORTHO05D000780 1.2e-22 109.8 60 81.7
THA.LOC104802188 Tarenaya hassleriana HOM05D000141 ORTHO05D000780 8.5e-16 87.0 65 61.5
Lj2A1200G62 Lonicera japonica HOM05D000141 ORTHO05D000780 2.3e-13 79.0 65 58.5
DCAR_002864 Daucus carota HOM05D000141 ORTHO05D000780 3.4e-12 75.1 67 56.7
Potri.002G201000 Populus trichocarpa HOM05D000141 ORTHO05D000780 3.4e-12 75.1 65 56.9
Dinv33083 Davidia involucrata HOM05D000141 ORTHO05D000780 7.5e-12 73.9 65 58.5
Ciclev10018670m.g Citrus clementina HOM05D000141 ORTHO05D000780 1.7e-11 72.8 72 50.0
COL.COLO4_23295 Corchorus olitorius HOM05D000141 ORTHO05D000780 3.7e-11 71.6 68 50.0
Gohir.A07G126500 Gossypium hirsutum HOM05D000141 ORTHO05D000780 3.7e-11 71.6 65 52.3
Gohir.D07G130600 Gossypium hirsutum HOM05D000141 ORTHO05D000780 3.7e-11 71.6 65 52.3
Gorai.001G141400 Gossypium raimondii HOM05D000141 ORTHO05D000780 3.7e-11 71.6 65 52.3
Cfa005863 Carpinus fangiana HOM05D000141 ORTHO05D000780 8.3e-11 70.5 70 48.6
Haze_04985 Corylus avellana HOM05D000141 ORTHO05D000780 8.3e-11 70.5 70 48.6
FAN15G3653 Fragaria x ananassa HOM05D000141 ORTHO05D000780 2.4e-10 68.9 65 50.8
FAN20G0717 Fragaria x ananassa HOM05D000141 ORTHO05D000780 2.4e-10 68.9 65 50.8
FAN27G1998 Fragaria x ananassa HOM05D000141 ORTHO05D000780 2.4e-10 68.9 65 50.8
Lalb_Chr21g0309371 Lupinus albus HOM05D000141 ORTHO05D000780 2.4e-10 68.9 70 48.6
Prupe.8G265600 Prunus persica HOM05D000141 ORTHO05D000780 2.4e-10 68.9 65 52.3
QL12p028601 Quercus lobata HOM05D000141 ORTHO05D000780 2.4e-10 68.9 66 50.0
Phvul.007G217400 Phaseolus vulgaris HOM05D000141 ORTHO05D000780 3.1e-10 68.6 70 47.1
Actinidia21428 Actinidia chinensis HOM05D000141 ORTHO05D000780 4.1e-10 68.2 65 50.8
Thecc.01G306900 Theobroma cacao HOM05D000141 ORTHO05D000780 4.1e-10 68.2 65 50.8
Actinidia33268 Actinidia chinensis HOM05D000141 ORTHO05D000780 5.4e-10 67.8 65 49.2
Duzib133G0990 Durio zibethinus HOM05D000141 ORTHO05D000780 5.4e-10 67.8 65 49.2
FvH4_2g26160 Fragaria vesca HOM05D000141 ORTHO05D000780 5.4e-10 67.8 65 49.2
FAN24G1175 Fragaria x ananassa HOM05D000141 ORTHO05D000780 5.4e-10 67.8 65 49.2
Gohir.A08G118200 Gossypium hirsutum HOM05D000141 ORTHO05D000780 9.1e-10 67.0 64 51.6
Rhsim13G0007800 Rhododendron simsii HOM05D000141 ORTHO05D000780 9.1e-10 67.0 66 48.5
TWI14G1074 Tripterygium wilfordii HOM05D000141 ORTHO05D000780 1.2e-09 66.6 65 55.4
VMungo0720G0660 Vigna mungo HOM05D000141 ORTHO05D000780 1.2e-09 66.6 70 44.3
Potri.014G125700 Populus trichocarpa HOM05D000141 ORTHO05D000780 1.6e-09 66.2 65 50.8
Peaxi162Scf00147g00075 Petunia axillaris HOM05D000141 ORTHO05D000780 2.7e-09 65.5 58 50.0
HanXRQChr01g0000931 Helianthus annuus HOM05D000141 ORTHO05D000780 3.5e-09 65.1 58 50.0
CsaV3_4G001020 Cucumis sativus L. HOM05D000141 ORTHO05D000780 4.5e-09 64.7 65 50.8
Gohir.D08G139200 Gossypium hirsutum HOM05D000141 ORTHO05D000780 4.5e-09 64.7 69 46.4
Gorai.004G142900 Gossypium raimondii HOM05D000141 ORTHO05D000780 4.5e-09 64.7 69 46.4
RcHm_v2.0_Chr6g0294551 Rosa chinensis HOM05D000141 ORTHO05D000780 4.5e-09 64.7 64 48.4
arahy.Tifrunner.gnm1.ann1.BD3621 Arachis hypogaea HOM05D000141 ORTHO05D000780 5.9e-09 64.3 59 50.8
arahy.Tifrunner.gnm1.ann1.M8MQLJ Arachis hypogaea HOM05D000141 ORTHO05D000780 5.9e-09 64.3 59 50.8
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 5.9e-09 64.3 56 51.8
ECA248G0454 Erigeron canadensis HOM05D000141 ORTHO05D000780 5.9e-09 64.3 58 50.0
Phvul.001G210500 Phaseolus vulgaris HOM05D000141 ORTHO05D000780 5.9e-09 64.3 83 44.6
VMungo1383G3583 Vigna mungo HOM05D000141 ORTHO05D000780 5.9e-09 64.3 83 45.8
AUR62008729 Chenopodium quinoa HOM05D000141 ORTHO05D000780 7.7e-09 63.9 65 47.7
AUR62025508 Chenopodium quinoa HOM05D000141 ORTHO05D000780 7.7e-09 63.9 65 47.7
Hma1.2p1_0212F.1_g090220 Hydrangea macrophylla HOM05D000141 ORTHO05D000780 7.7e-09 63.9 70 44.3
ClCG10G011150 Citrullus lanatus HOM05D000141 ORTHO05D000780 1.0e-08 63.5 70 45.7
MELO3C017936.2 Cucumis melo HOM05D000141 ORTHO05D000780 1.7e-08 62.8 65 49.2
GSVIVG01028062001 Vitis vinifera HOM05D000141 ORTHO05D000780 1.7e-08 62.8 69 46.4
Nitab4.5_0005587g0050 Nicotiana tabacum HOM05D000141 ORTHO05D000780 2.2e-08 62.4 67 44.8
Sed0007120 Sechium edule HOM05D000141 ORTHO05D000780 2.2e-08 62.4 65 47.7
CANSAT80G1363 Cannabis sativa HOM05D000141 ORTHO05D000780 2.9e-08 62.0 67 50.7
Glyma.02G015500 Glycine max HOM05D000141 ORTHO05D000780 2.9e-08 62.0 70 44.3
PGSC0003DMG400007291 Solanum tuberosum HOM05D000141 ORTHO05D000780 2.9e-08 62.0 65 46.2
CSS0026057 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D000780 3.8e-08 61.6 65 47.7
CSS0030228 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D000780 3.8e-08 61.6 65 47.7
Duzib138G0041 Durio zibethinus HOM05D000141 ORTHO05D000780 3.8e-08 61.6 64 48.4
MD03G1292600 Malus domestica HOM05D000141 ORTHO05D000780 3.8e-08 61.6 65 49.2
CAN.G862.57 Capsicum annuum HOM05D000141 ORTHO05D000780 5.0e-08 61.2 66 43.9
Ca_10313_v3 Cicer arietinum L. HOM05D000141 ORTHO05D000780 5.0e-08 61.2 70 47.1
Solyc06g009780.4 Solanum lycopersicum HOM05D000141 ORTHO05D000780 5.0e-08 61.2 65 44.6
Manes.01G223400 Manihot esculenta HOM05D000141 ORTHO05D000780 6.5e-08 60.8 64 50.0
Sopen06g004410 Solanum pennellii HOM05D000141 ORTHO05D000780 6.5e-08 60.8 58 48.3
HanXRQChr04g0114691 Helianthus annuus HOM05D000141 ORTHO05D000780 1.1e-07 60.1 52 50.0
Hma1.2p1_0494F.1_g165530 Hydrangea macrophylla HOM05D000141 ORTHO05D000780 1.1e-07 60.1 70 45.7
Cpa.g.sc151.38 Carica papaya HOM05D000141 ORTHO05D000780 1.5e-07 59.7 56 42.9
Solyc09g075480.3 Solanum lycopersicum HOM05D000141 ORTHO05D000780 1.5e-07 59.7 66 45.5
PGSC0003DMG400031822 Solanum tuberosum HOM05D000141 ORTHO05D000780 1.5e-07 59.7 66 45.5
TAR362G0312 Trochodendron aralioides HOM05D000141 ORTHO05D000780 1.5e-07 59.7 65 46.2
Ah.08g213560 Amaranthus hybridus HOM05D000141 ORTHO05D000780 1.9e-07 59.3 68 45.6
MSTRG.17395 Avicennia marina HOM05D000141 ORTHO05D000780 1.9e-07 59.3 65 44.6
Glyma.10G016000 Glycine max HOM05D000141 ORTHO05D000780 1.9e-07 59.3 70 40.0
EL10Ac7g17585 Beta vulgaris HOM05D000141 ORTHO05D000780 2.5e-07 58.9 70 40.0
Sopen09g030270 Solanum pennellii HOM05D000141 ORTHO05D000780 2.5e-07 58.9 66 45.5
CiPaw.08G092600 Carya illinoinensis HOM05D000141 ORTHO05D000780 3.2e-07 58.5 70 38.6
PGR119G0334 Punica granatum HOM05D000141 ORTHO05D000780 3.2e-07 58.5 55 52.7
Medtr7g109130 Medicago truncatula HOM05D000141 ORTHO05D000780 4.2e-07 58.2 70 44.3
Sabra14G0093500 Salix brachista HOM05D000141 ORTHO05D000780 4.2e-07 58.2 70 45.7
Hund05456 Selenicereus undatus HOM05D000141 ORTHO05D000780 5.5e-07 57.8 69 40.6
Eucgr.H01079 Eucalyptus grandis HOM05D000141 ORTHO05D000780 7.2e-07 57.4 64 45.3
Glyma.03G217000 Glycine max HOM05D000141 ORTHO05D000780 7.2e-07 57.4 84 44.0
Hund18238 Selenicereus undatus HOM05D000141 ORTHO05D000780 7.2e-07 57.4 65 44.6
Dinv24413 Davidia involucrata HOM05D000141 ORTHO05D000780 9.4e-07 57.0 90 41.1
Dinv30854 Davidia involucrata HOM05D000141 ORTHO05D000780 9.4e-07 57.0 64 45.3
Hma1.2p1_1320F.1_g275320 Hydrangea macrophylla HOM05D000141 ORTHO05D000780 1.2e-06 56.6 61 47.5
Nitab4.5_0001971g0030 Nicotiana tabacum HOM05D000141 ORTHO05D000780 1.2e-06 56.6 89 40.4
Peaxi162Scf00001g03324 Petunia axillaris HOM05D000141 ORTHO05D000780 1.2e-06 56.6 67 41.8
TAR365G0511 Trochodendron aralioides HOM05D000141 ORTHO05D000780 1.2e-06 56.6 52 50.0
Psat3g021160 Pisum sativum HOM05D000141 ORTHO05D000780 2.1e-06 55.8 87 39.1
Peaxi162Scf00073g00013 Petunia axillaris HOM05D000141 ORTHO05D000780 3.6e-06 55.1 59 49.2
BcaB04g18114 Brassica carinata HOM05D000141 ORTHO05D039088 4.7e-06 54.7 27 88.9
Cc01_g21160 Coffea canephora HOM05D000141 ORTHO05D000780 4.7e-06 54.7 60 41.7
Eucgr.H03277 Eucalyptus grandis HOM05D000141 ORTHO05D000780 4.7e-06 54.7 65 41.5
TPR.G9609 Trifolium pratense HOM05D000141 ORTHO05D000780 4.7e-06 54.7 49 51.0
GSVIVG01000836001 Vitis vinifera HOM05D000141 ORTHO05D000780 4.7e-06 54.7 69 42.0
Lj1g0017771 Lotus japonicus HOM05D000141 ORTHO05D020259 6.1e-06 54.3 59 50.8


User provided reference genes

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