Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 3.7e-82 308.1 154 100.0
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 4.4e-59 231.5 124 94.4
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 4.7e-53 211.5 157 72.6
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 4.7e-53 211.5 157 72.6
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 9.8e-51 203.8 157 70.7
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 9.8e-51 203.8 157 70.7
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 1.4e-49 199.9 163 68.7
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 3.2e-49 198.7 185 65.4
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 7.8e-48 194.1 154 70.8
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 3.1e-44 182.2 163 66.9
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 4.4e-43 178.3 163 63.8
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 7.5e-43 177.6 163 62.6
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 2.4e-41 172.6 162 60.5
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 5.4e-41 171.4 163 60.7
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 1.7e-39 166.4 155 58.7
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 6.4e-34 147.9 142 62.7
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 2.8e-29 132.5 169 52.1
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 7.1e-25 117.9 156 48.1
BcaC03g18319 Brassica carinata HOM05D001447 ORTHO05D005923 1.2e-24 117.1 105 61.9
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 3.5e-24 115.5 117 58.1
BcaC02g08532 Brassica carinata HOM05D001447 ORTHO05D005923 3.9e-23 112.1 117 57.3
BcaC04g19960 Brassica carinata HOM05D001447 ORTHO05D005923 7.3e-22 107.8 101 59.4
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 5.3e-20 101.7 180 41.7
AL6G53120 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 3.4e-19 99.0 60 83.3
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.4e-17 93.6 146 50.0
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 5.1e-15 85.1 183 39.3
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 8.7e-15 84.3 169 39.1
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 8.7e-15 84.3 184 37.5
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.5e-14 83.6 188 37.2
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.5e-14 83.6 188 37.2
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 3.3e-14 82.4 173 38.2
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 9.6e-14 80.9 181 37.6
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.6e-13 80.1 183 35.5
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 4.8e-13 78.6 87 51.7
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 1.1e-12 77.4 172 32.6
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 1.4e-12 77.0 143 39.2
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 1.8e-12 76.6 178 36.0
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 1.8e-12 76.6 175 36.6
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 2.4e-12 76.3 177 35.0
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 4.0e-12 75.5 172 36.0
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 5.3e-12 75.1 183 33.3
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 5.3e-12 75.1 90 47.8
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 1.2e-11 73.9 187 33.2
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.5e-11 73.6 118 40.7
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 2.0e-11 73.2 188 34.6
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 2.0e-11 73.2 139 38.1
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 2.6e-11 72.8 179 31.3
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.6e-11 72.8 113 38.9
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 3.4e-11 72.4 193 34.2
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 3.4e-11 72.4 159 37.7
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 4.5e-11 72.0 148 34.5
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 5.8e-11 71.6 136 35.3
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 7.6e-11 71.2 194 33.5
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 1.3e-10 70.5 67 52.2
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.3e-10 70.5 134 36.6
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 2.2e-10 69.7 87 46.0
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 3.8e-10 68.9 175 34.3
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 8.4e-10 67.8 91 47.3
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 8.4e-10 67.8 191 33.0
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 1.1e-09 67.4 97 42.3
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 1.1e-09 67.4 70 52.9
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 1.4e-09 67.0 85 48.2
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.4e-09 67.0 175 30.9
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 1.9e-09 66.6 146 33.6
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 2.4e-09 66.2 155 31.0
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 2.4e-09 66.2 177 34.5
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.4e-09 66.2 111 43.2
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 3.2e-09 65.9 181 34.8
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 4.2e-09 65.5 181 32.0
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 4.2e-09 65.5 174 32.2
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 4.2e-09 65.5 176 34.7
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 5.5e-09 65.1 195 30.3
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 5.5e-09 65.1 168 33.9
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 5.5e-09 65.1 152 31.6
BcaC03g16136 Brassica carinata HOM05D015278 ORTHO05D032781 7.1e-09 64.7 161 37.9
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 9.3e-09 64.3 189 33.9
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 1.2e-08 63.9 173 34.1
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 1.2e-08 63.9 69 46.4
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 1.6e-08 63.5 95 41.1
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 1.6e-08 63.5 180 35.0
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.6e-08 63.5 92 43.5
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 2.1e-08 63.2 96 44.8
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 2.1e-08 63.2 126 37.3
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 2.7e-08 62.8 132 36.4
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 2.7e-08 62.8 195 31.3
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 3.5e-08 62.4 131 35.9
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.5e-08 62.4 131 35.9
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 3.5e-08 62.4 166 31.3
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 3.5e-08 62.4 112 38.4
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 4.6e-08 62.0 140 37.1
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 4.6e-08 62.0 173 32.9
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 7.9e-08 61.2 120 36.7
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.0e-07 60.8 131 35.9
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.0e-07 60.8 131 35.9
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 1.0e-07 60.8 170 33.5
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 1.0e-07 60.8 142 36.6
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 1.3e-07 60.5 184 34.8
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 1.3e-07 60.5 164 32.9
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 1.8e-07 60.1 137 33.6
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 2.3e-07 59.7 169 31.4
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 3.0e-07 59.3 65 52.3
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 3.0e-07 59.3 72 50.0
C02p39380 Brassica napus HOM05D015278 ORTHO05D032781 3.9e-07 58.9 62 61.3
BolC2t09948H Brassica oleracea HOM05D015278 ORTHO05D032781 3.9e-07 58.9 62 61.3
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 3.9e-07 58.9 184 32.1
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 3.9e-07 58.9 84 46.4
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 5.1e-07 58.5 131 32.1
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 6.7e-07 58.2 76 50.0
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 6.7e-07 58.2 157 28.0
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 8.7e-07 57.8 62 53.2
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 1.5e-06 57.0 80 46.2
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 1.5e-06 57.0 164 31.7
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 9.6e-06 54.3 183 31.7
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 9.6e-06 54.3 185 30.3
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 9.6e-06 54.3 166 31.3


User provided reference genes

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