Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26446 Brassica carinata HOM05D000318 ORTHO05D091099 2.1e-114 416.4 330 100.0
BcaC06g31456 Brassica carinata HOM05D000318 ORTHO05D000420 2.9e-92 342.8 299 97.7
BcaB02g11438 Brassica carinata HOM05D002250 ORTHO05D092131 1.4e-30 137.9 226 81.4
CARHR033550 Cardamine hirsuta HOM05D000029 ORTHO05D006280 5.4e-22 109.4 172 60.5
AL1G48600 Arabidopsis lyrata HOM05D000029 ORTHO05D006280 3.5e-21 106.7 176 58.5
Thhalv10006642m.g Eutrema salsugineum HOM05D000029 ORTHO05D006280 1.7e-20 104.4 183 49.2
Sp1g29360 Schrenkiella parvula HOM05D000029 ORTHO05D006280 5.6e-19 99.4 175 50.3
BcaB03g13682 Brassica carinata HOM05D000029 ORTHO05D006280 7.3e-19 99.0 170 50.6
A05p24050 Brassica napus HOM05D000029 ORTHO05D006280 1.6e-18 97.8 169 56.2
BraA05t21284Z Brassica rapa HOM05D000029 ORTHO05D006280 1.6e-18 97.8 169 56.2
BcaC05g27773 Brassica carinata HOM05D000029 ORTHO05D006280 2.1e-18 97.4 172 46.5
C05p37690 Brassica napus HOM05D000029 ORTHO05D006280 2.1e-18 97.4 172 46.5
Aa31LG6G8290 Aethionema arabicum HOM05D000029 ORTHO05D006280 6.2e-18 95.9 179 48.0
Carub.0001s3218 Capsella rubella HOM05D000029 ORTHO05D006280 5.2e-17 92.8 182 53.3
AT1G34110 Arabidopsis thaliana HOM05D000029 ORTHO05D006280 1.5e-16 91.3 172 56.4
Thecc.08G162000 Theobroma cacao HOM05D000029 ORTHO05D006280 1.6e-13 81.3 182 51.1
Nn6g32190 Nelumbo nucifera HOM05D000029 ORTHO05D006280 2.7e-13 80.5 170 50.0
THA.LOC109115978 Tarenaya hassleriana HOM05D000029 ORTHO05D006280 3.5e-13 80.1 176 52.3
Gohir.A05G271300 Gossypium hirsutum HOM05D000029 ORTHO05D006280 6.0e-13 79.3 170 50.6
Lj5g0005979 Lotus japonicus HOM05D000029 ORTHO05D006280 6.0e-13 79.3 174 50.6
Cpa.g.sc26.113 Carica papaya HOM05D000029 ORTHO05D006280 7.8e-13 79.0 174 51.1
Gorai.009G286600 Gossypium raimondii HOM05D000029 ORTHO05D006280 1.0e-12 78.6 170 50.6
Gohir.D05G273500 Gossypium hirsutum HOM05D000029 ORTHO05D006280 1.3e-12 78.2 173 49.1
TPR.G17009 Trifolium pratense HOM05D000029 ORTHO05D006280 2.3e-12 77.4 173 50.3
Nn5g28856 Nelumbo nucifera HOM05D000029 ORTHO05D006280 3.9e-12 76.6 172 50.0
Lalb_Chr02g0141611 Lupinus albus HOM05D000029 ORTHO05D006280 6.6e-12 75.9 173 49.1
MD05G1035300 Malus domestica HOM05D000029 ORTHO05D006280 1.5e-11 74.7 174 48.9
Cc10_g06480 Coffea canephora HOM05D000029 ORTHO05D006280 4.3e-11 73.2 175 47.4
Manes.18G095600 Manihot esculenta HOM05D000029 ORTHO05D006280 5.6e-11 72.8 175 42.9
HPP92_000634 Vanilla planifolia HOM05D000029 ORTHO05D006280 5.6e-11 72.8 128 41.4
Sed0008690 Sechium edule HOM05D000029 ORTHO05D006280 1.6e-10 71.2 170 47.6
FvH4_2g13450 Fragaria vesca HOM05D000029 ORTHO05D006280 2.1e-10 70.9 127 41.7
FAN15G2276 Fragaria x ananassa HOM05D000029 ORTHO05D006280 2.1e-10 70.9 127 41.7
FAN24G0462 Fragaria x ananassa HOM05D000029 ORTHO05D006280 2.1e-10 70.9 127 41.7
SGA_v2.0_scaffold82G26178 Striga asiatica HOM05D000029 ORTHO05D006280 4.7e-10 69.7 182 46.2
BolC5t32512H Brassica oleracea HOM05D000029 ORTHO05D006280 1.4e-09 68.2 172 39.0
MSTRG.22111 Avicennia marina HOM05D000029 ORTHO05D006280 2.4e-09 67.4 129 39.5
FAN27G1948 Fragaria x ananassa HOM05D000029 ORTHO05D006280 2.4e-09 67.4 127 40.2
RcHm_v2.0_Chr6g0275071 Rosa chinensis HOM05D000029 ORTHO05D006280 5.2e-09 66.2 127 40.2
Migut.N02948 Erythranthe guttata HOM05D000029 ORTHO05D006280 2.6e-08 63.9 128 38.3
Migut.O00756 Erythranthe guttata HOM05D000029 ORTHO05D006280 2.6e-08 63.9 128 38.3
MELO3C019970.2 Cucumis melo HOM05D000029 ORTHO05D006280 1.3e-07 61.6 127 35.4
ClCG08G007270 Citrullus lanatus HOM05D000029 ORTHO05D006280 2.9e-07 60.5 131 33.6
Atru.chr13.1990 Acer truncatum HOM05D000029 ORTHO05D006280 6.4e-07 59.3 170 46.5
Prupe.8G043000 Prunus persica HOM05D000029 ORTHO05D006280 2.4e-06 57.4 168 45.8
Manes.02G184100 Manihot esculenta HOM05D000029 ORTHO05D006280 7.1e-06 55.8 182 37.4


User provided reference genes

Program Settings