Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 2.0e-118 429.1 214 100.0
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 4.0e-58 228.8 129 93.0
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 3.0e-37 159.5 96 85.4
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 5.0e-37 158.7 97 83.5
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 4.3e-36 155.6 96 85.4
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.8e-35 152.9 96 81.2
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 3.6e-35 152.5 96 83.3
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 3.6e-35 152.5 96 83.3
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 4.7e-35 152.1 96 84.4
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 6.2e-35 151.8 96 79.2
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 5.8e-33 145.2 95 73.7
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 2.4e-31 139.8 96 75.0
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 5.4e-31 138.7 96 77.1
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 1.0e-29 134.4 96 71.9
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 2.3e-29 133.3 96 69.8
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 3.0e-29 132.9 94 68.1
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 3.9e-29 132.5 96 71.9
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.6e-27 127.1 103 68.0
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 2.1e-27 126.7 117 58.1
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 8.1e-27 124.8 105 58.1
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 1.4e-26 124.0 105 61.0
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 2.3e-26 123.2 111 56.8
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 3.1e-26 122.9 108 57.4
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 4.0e-26 122.5 110 55.5
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 6.8e-26 121.7 94 60.6
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 6.8e-26 121.7 94 61.7
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 6.8e-26 121.7 93 64.5
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 8.9e-26 121.3 94 61.7
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 8.9e-26 121.3 98 61.2
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 1.2e-25 120.9 109 56.0
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 1.2e-25 120.9 92 63.0
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 1.5e-25 120.6 110 55.5
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 1.5e-25 120.6 115 52.2
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 2.0e-25 120.2 94 62.8
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 2.6e-25 119.8 100 62.0
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 3.4e-25 119.4 94 60.6
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 3.4e-25 119.4 93 63.4
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 3.4e-25 119.4 94 60.6
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 4.4e-25 119.0 94 59.6
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 5.8e-25 118.6 94 61.7
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 7.5e-25 118.2 93 63.4
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.3e-24 117.5 94 60.6
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 1.3e-24 117.5 94 58.5
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 1.7e-24 117.1 92 63.0
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 2.2e-24 116.7 110 53.6
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 2.9e-24 116.3 92 59.8
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 2.9e-24 116.3 92 59.8
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 3.7e-24 115.9 103 58.3
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 4.9e-24 115.5 93 62.4
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 4.9e-24 115.5 93 61.3
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 4.9e-24 115.5 106 59.4
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 4.9e-24 115.5 94 57.4
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 4.9e-24 115.5 94 57.4
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 2.4e-23 113.2 106 56.6
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 2.4e-23 113.2 108 51.9
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 3.2e-23 112.8 94 59.6
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 3.2e-23 112.8 106 55.7
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 4.1e-23 112.5 96 57.3
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 9.2e-23 111.3 94 57.4
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 9.2e-23 111.3 92 55.4
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 1.2e-22 110.9 95 58.9
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.2e-22 110.9 95 58.9
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.2e-22 110.9 95 58.9
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.2e-22 110.9 95 58.9
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.6e-22 110.5 94 56.4
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 2.7e-22 109.8 94 58.5
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 2.7e-22 109.8 95 57.9
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.5e-22 109.4 95 57.9
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 3.5e-22 109.4 108 50.9
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 6.0e-22 108.6 92 64.1
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 6.0e-22 108.6 106 50.9
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 7.8e-22 108.2 115 53.0
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 7.8e-22 108.2 104 54.8
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 1.0e-21 107.8 94 56.4
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.3e-21 106.7 84 59.5
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 3.0e-21 106.3 93 58.1
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.9e-21 105.9 94 56.4
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 5.1e-21 105.5 92 58.7
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 6.6e-21 105.1 94 56.4
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 6.6e-21 105.1 94 53.2
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 6.6e-21 105.1 93 57.0
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 1.1e-20 104.4 98 51.0
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.1e-20 104.4 83 59.0
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 1.5e-20 104.0 94 57.4
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 1.9e-20 103.6 78 60.3
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 2.5e-20 103.2 83 60.2
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 5.6e-20 102.1 106 48.1
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 7.3e-20 101.7 94 55.3
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 2.1e-19 100.1 94 54.3
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 2.1e-19 100.1 94 54.3
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 2.1e-19 100.1 94 54.3
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 3.6e-19 99.4 105 49.5
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 4.7e-19 99.0 95 57.9
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 6.2e-19 98.6 92 52.2
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 6.2e-19 98.6 92 52.2
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 2.3e-18 96.7 71 66.2
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 4.0e-18 95.9 92 52.2
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 4.0e-18 95.9 90 50.0
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.2e-17 94.4 98 50.0
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 1.5e-17 94.0 94 50.0
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.0e-17 93.6 98 50.0
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 3.4e-17 92.8 92 53.3
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 4.4e-17 92.4 93 46.2
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 7.6e-17 91.7 89 51.7
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.7e-16 90.5 92 48.9
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 1.7e-16 90.5 92 48.9
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.9e-16 89.0 93 50.5
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 6.4e-16 88.6 117 42.7
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 8.4e-16 88.2 92 46.7
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 1.9e-15 87.0 57 80.7
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 7.1e-15 85.1 101 47.5
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 4.6e-14 82.4 80 55.0
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 6.0e-14 82.0 67 58.2
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 3.6e-11 72.8 93 48.4
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 1.4e-10 70.9 115 38.3
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 5.2e-10 68.9 95 41.1
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 1.5e-09 67.4 103 43.7
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 5.8e-09 65.5 64 51.6
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 9.9e-09 64.7 99 38.4
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 2.2e-08 63.5 95 40.0
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 6.4e-08 62.0 68 50.0
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.5e-06 56.2 48 54.2
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 4.6e-06 55.8 83 34.9


User provided reference genes

Program Settings