Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26324 Brassica carinata HOM05D007805 ORTHO05D009877 1.2e-30 136.0 72 100.0
BcaC05g28092 Brassica carinata HOM05D007805 ORTHO05D009877 3.4e-30 134.4 72 98.6
A05p26590 Brassica napus HOM05D007805 ORTHO05D009877 3.4e-30 134.4 72 98.6
C05p41160 Brassica napus HOM05D007805 ORTHO05D009877 3.4e-30 134.4 72 98.6
BolC5t32859H Brassica oleracea HOM05D007805 ORTHO05D009877 3.4e-30 134.4 72 98.6
BraA05t21534Z Brassica rapa HOM05D007805 ORTHO05D009877 3.4e-30 134.4 72 98.6
Sp3g20010 Schrenkiella parvula HOM05D007805 ORTHO05D009877 3.4e-30 134.4 72 98.6
Thhalv10021880m.g Eutrema salsugineum HOM05D007805 ORTHO05D009877 3.8e-29 131.0 72 95.8
Carub.0003s2238 Capsella rubella HOM05D007805 ORTHO05D009877 1.1e-25 119.4 72 86.1
CARHR098100 Cardamine hirsuta HOM05D007805 ORTHO05D009877 6.2e-24 113.6 72 84.7
AL3G36420 Arabidopsis lyrata HOM05D007805 ORTHO05D009877 1.8e-23 112.1 72 86.1
AT3G22210 Arabidopsis thaliana HOM05D007805 ORTHO05D009877 3.1e-23 111.3 72 84.7
THA.LOC104808521 Tarenaya hassleriana HOM05D007805 ORTHO05D009877 7.4e-17 90.1 72 65.3
Aa31LG8G8770 Aethionema arabicum HOM05D000023 ORTHO05D000014 1.3e-16 89.4 66 75.8
Cpa.g.sc8.292 Carica papaya HOM05D007805 ORTHO05D009877 1.3e-16 89.4 67 68.7
Atru.chr8.992 Acer truncatum HOM05D007805 ORTHO05D009877 8.2e-16 86.7 67 68.7
TAR624G1043 Trochodendron aralioides HOM05D007805 ORTHO05D009877 8.2e-16 86.7 72 66.7
Ciclev10013268m.g Citrus clementina HOM05D007805 ORTHO05D009877 2.4e-15 85.1 68 66.2
Oeu003099.1 Olea europaea HOM05D007805 ORTHO05D009877 6.9e-15 83.6 67 61.2
Dinv24693 Davidia involucrata HOM05D007805 ORTHO05D009877 9.0e-15 83.2 67 62.7
Duzib133G0571 Durio zibethinus HOM05D007805 ORTHO05D009877 2.0e-14 82.0 66 65.2
SalBow7G2318 Salvia bowleyana HOM05D007805 ORTHO05D009877 2.0e-14 82.0 68 63.2
Sed0026541 Sechium edule HOM05D007805 ORTHO05D009877 4.5e-14 80.9 70 61.4
MSTRG.6601 Avicennia marina HOM05D007805 ORTHO05D009877 5.9e-14 80.5 68 60.3
CSS0006336 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 5.9e-14 80.5 68 64.7
COL.COLO4_33759 Corchorus olitorius HOM05D007805 ORTHO05D009877 5.9e-14 80.5 66 66.7
TWI34G1833 Tripterygium wilfordii HOM05D007805 ORTHO05D009877 7.7e-14 80.1 72 62.5
Cc05_g00040 Coffea canephora HOM05D007805 ORTHO05D009877 1.0e-13 79.7 66 63.6
PSO675G4353 Papaver somniferum HOM05D007805 ORTHO05D009877 1.0e-13 79.7 72 63.9
PSO541G3237 Papaver somniferum HOM05D007805 ORTHO05D009877 1.7e-13 79.0 72 63.9
PGSC0003DMG400024282 Solanum tuberosum HOM05D007805 ORTHO05D009877 1.7e-13 79.0 72 56.9
GSVIVG01015820001 Vitis vinifera HOM05D007805 ORTHO05D009877 1.7e-13 79.0 67 62.7
CSS0028935 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 2.2e-13 78.6 68 64.7
Lsat_1_v5_gn_6_41501 Lactuca sativa HOM05D007805 ORTHO05D009877 2.2e-13 78.6 67 59.7
CSS0012461 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 2.9e-13 78.2 68 64.7
Peaxi162Scf00047g02325 Petunia axillaris HOM05D007805 ORTHO05D009877 2.9e-13 78.2 72 54.2
MD09G1139100 Malus domestica HOM05D007805 ORTHO05D009877 3.8e-13 77.8 70 55.7
Nitab4.5_0002015g0030 Nicotiana tabacum HOM05D007805 ORTHO05D009877 5.0e-13 77.4 69 55.1
Thecc.01G172700 Theobroma cacao HOM05D007805 ORTHO05D009877 6.5e-13 77.0 66 62.1
MELO3C016236.2 Cucumis melo HOM05D007805 ORTHO05D009877 8.5e-13 76.6 70 57.1
ClCG07G010920 Citrullus lanatus HOM05D007805 ORTHO05D009877 1.1e-12 76.3 70 57.1
Migut.M00097 Erythranthe guttata HOM05D007805 ORTHO05D009877 1.1e-12 76.3 64 62.5
CsaV3_4G007340 Cucumis sativus L. HOM05D007805 ORTHO05D009877 1.4e-12 75.9 70 57.1
HanXRQChr13g0396951 Helianthus annuus HOM05D007805 ORTHO05D009877 1.4e-12 75.9 67 59.7
Phvul.011G024400 Phaseolus vulgaris HOM05D007805 ORTHO05D009877 1.4e-12 75.9 66 63.6
Sopen12g002380 Solanum pennellii HOM05D007805 ORTHO05D009877 1.4e-12 75.9 72 55.6
CANSAT64G2225 Cannabis sativa HOM05D007805 ORTHO05D009877 2.5e-12 75.1 67 58.2
CDE02G0479 Ceratophyllum demersum HOM05D000623 ORTHO05D005779 2.5e-12 75.1 67 61.2
Manes.08G069000 Manihot esculenta HOM05D007805 ORTHO05D009877 3.2e-12 74.7 67 59.7
ECA233G5845 Erigeron canadensis HOM05D007805 ORTHO05D009877 5.5e-12 73.9 67 58.2
FAN02G2902 Fragaria x ananassa HOM05D007805 ORTHO05D009877 5.5e-12 73.9 67 56.7
FAN09G3597 Fragaria x ananassa HOM05D007805 ORTHO05D009877 5.5e-12 73.9 67 56.7
RcHm_v2.0_Chr2g0153601 Rosa chinensis HOM05D007805 ORTHO05D009877 5.5e-12 73.9 67 56.7
Solyc12g006440.2 Solanum lycopersicum HOM05D007805 ORTHO05D009877 5.5e-12 73.9 71 54.9
Duzib138G1109 Durio zibethinus HOM05D007805 ORTHO05D009877 7.2e-12 73.6 66 59.1
FvH4_6g39540 Fragaria vesca HOM05D007805 ORTHO05D009877 7.2e-12 73.6 67 56.7
FAN14G4838 Fragaria x ananassa HOM05D007805 ORTHO05D009877 7.2e-12 73.6 67 56.7
AUR62017845 Chenopodium quinoa HOM05D007805 ORTHO05D009877 9.4e-12 73.2 68 55.9
Glyma.11G096300 Glycine max HOM05D007805 ORTHO05D009877 9.4e-12 73.2 70 57.1
Gohir.D11G163200 Gossypium hirsutum HOM05D007805 ORTHO05D009877 9.4e-12 73.2 67 59.7
Gorai.007G173900 Gossypium raimondii HOM05D007805 ORTHO05D009877 9.4e-12 73.2 67 59.7
Lj3g0006859 Lotus japonicus HOM05D007805 ORTHO05D009877 9.4e-12 73.2 70 60.0
Sabra06G0014500 Salix brachista HOM05D007805 ORTHO05D009877 9.4e-12 73.2 67 58.2
Rhsim12G0014500 Rhododendron simsii HOM05D007805 ORTHO05D009877 1.2e-11 72.8 68 60.3
Gohir.A11G156100 Gossypium hirsutum HOM05D007805 ORTHO05D009877 1.6e-11 72.4 67 58.2
QL04p061619 Quercus lobata HOM05D007805 ORTHO05D009877 1.6e-11 72.4 67 58.2
PGR142G2087 Punica granatum HOM05D007805 ORTHO05D009877 2.1e-11 72.0 62 61.3
Glyma.12G022400 Glycine max HOM05D007805 ORTHO05D009877 2.7e-11 71.6 66 57.6
Potri.006G021100 Populus trichocarpa HOM05D007805 ORTHO05D009877 2.7e-11 71.6 67 53.7
Prupe.3G186600 Prunus persica HOM05D007805 ORTHO05D009877 2.7e-11 71.6 67 56.7
arahy.Tifrunner.gnm1.ann1.RTX0DF Arachis hypogaea HOM05D007805 ORTHO05D009877 3.6e-11 71.2 60 63.3
arahy.Tifrunner.gnm1.ann1.XU3UV1 Arachis hypogaea HOM05D007805 ORTHO05D009877 3.6e-11 71.2 60 63.3
MBI02_g35828_MAGBIO Magnolia biondii HOM05D007805 ORTHO05D009877 3.6e-11 71.2 68 58.8
CiPaw.03G113200 Carya illinoinensis HOM05D007805 ORTHO05D009877 4.6e-11 70.9 67 58.2
Cfa023524 Carpinus fangiana HOM05D007805 ORTHO05D009877 1.0e-10 69.7 67 56.7
Medtr4g076090 Medicago truncatula HOM05D007805 ORTHO05D009877 1.8e-10 68.9 66 60.6
Haze_13640 Corylus avellana HOM05D007805 ORTHO05D009877 1.1e-09 66.2 67 52.2
TPR.G21248 Trifolium pratense HOM05D007805 ORTHO05D009877 2.5e-09 65.1 66 57.6
Psat7g179400 Pisum sativum HOM05D007805 ORTHO05D009877 4.8e-08 60.8 69 53.6
unitig_899.g15287 Utricularia gibba HOM05D007805 ORTHO05D009877 1.1e-07 59.7 69 49.3
EL10Ac6g15349 Beta vulgaris HOM05D007805 ORTHO05D009877 5.9e-06 53.9 72 45.8


User provided reference genes

Program Settings