Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 3.1e-212 741.5 370 100.0
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 7.5e-206 720.3 385 94.0
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 7.5e-206 720.3 385 94.0
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 2.4e-204 715.3 390 92.6
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 1.0e-202 709.9 401 90.3
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 1.7e-202 709.1 395 91.4
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.4e-196 689.5 394 88.3
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 3.4e-182 641.7 389 84.1
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.5e-177 626.3 393 81.9
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 1.6e-176 622.9 398 78.6
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 9.9e-166 587.0 391 76.2
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 4.9e-165 584.7 391 75.7
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 8.4e-165 583.9 395 74.9
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 4.2e-164 581.6 391 75.4
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 7.8e-163 577.4 396 74.5
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 1.3e-160 570.1 387 73.9
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 4.8e-160 568.2 395 74.4
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.1e-156 557.0 328 83.8
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.5e-150 536.6 378 72.8
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 1.4e-132 476.9 398 59.8
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 1.7e-128 463.4 399 57.9
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 4.1e-127 458.8 400 57.0
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 8.5e-125 451.1 399 57.1
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 5.5e-124 448.4 393 58.5
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.6e-123 446.8 390 59.0
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 2.7e-123 446.0 405 56.8
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 6.1e-123 444.9 361 59.8
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 6.1e-123 444.9 390 58.7
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.4e-122 443.7 399 55.9
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 3.0e-122 442.6 365 61.4
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 3.9e-122 442.2 327 65.7
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 2.0e-121 439.9 368 58.4
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 7.4e-121 438.0 374 58.0
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 1.7e-120 436.8 374 58.0
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 2.2e-120 436.4 405 55.1
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 2.2e-120 436.4 371 58.2
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 4.8e-120 435.3 404 55.2
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 4.8e-120 435.3 322 64.9
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.1e-119 434.1 390 57.9
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 1.5e-118 430.3 413 54.0
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 1.5e-118 430.3 377 56.0
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 3.5e-118 429.1 374 57.2
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 5.9e-118 428.3 379 57.0
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 5.9e-118 428.3 375 57.3
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 2.2e-117 426.4 370 57.3
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 5.0e-117 425.2 335 60.0
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 8.5e-117 424.5 326 61.3
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 1.1e-116 424.1 404 53.0
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.9e-116 423.3 401 55.6
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 2.5e-116 422.9 387 56.1
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 3.2e-116 422.5 381 56.4
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.2e-116 422.5 384 56.2
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.2e-116 422.2 318 62.9
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 1.2e-115 420.6 391 56.5
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 1.2e-115 420.6 365 57.5
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 4.7e-115 418.7 449 54.8
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 4.7e-115 418.7 379 56.2
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 6.1e-115 418.3 324 62.3
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 1.4e-114 417.2 376 55.6
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 5.7e-113 411.8 341 59.8
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 7.4e-113 411.4 324 62.0
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 4.8e-112 408.7 324 62.0
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 8.2e-112 407.9 406 50.7
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.4e-111 407.1 407 53.1
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 1.8e-111 406.8 336 57.1
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 7.0e-111 404.8 297 70.4
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 9.1e-111 404.4 326 58.6
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 9.1e-111 404.4 327 57.5
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 3.5e-110 402.5 321 58.6
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 7.7e-110 401.4 327 57.8
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 2.9e-109 399.4 343 55.7
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 3.8e-109 399.1 315 60.3
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 2.5e-108 396.4 334 57.5
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 3.2e-108 396.0 335 57.0
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 9.4e-108 394.4 306 59.5
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 6.1e-107 391.7 328 55.8
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 8.0e-107 391.3 319 57.4
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 1.0e-106 391.0 320 56.2
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.5e-105 387.1 322 55.9
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 2.0e-105 386.7 303 62.0
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 2.6e-105 386.3 316 58.9
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.6e-105 386.3 327 55.4
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 9.8e-105 384.4 462 47.4
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.8e-104 382.9 324 55.2
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 3.7e-104 382.5 321 57.0
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 5.4e-103 378.6 308 55.8
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 2.0e-102 376.7 380 50.5
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 2.7e-102 376.3 329 57.4
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.3e-101 374.0 322 58.4
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 5.0e-101 372.1 380 50.3
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 1.9e-100 370.2 310 57.1
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 6.8e-98 361.7 309 55.7
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 6.8e-98 361.7 372 47.6
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.2e-97 360.9 385 51.4
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 7.5e-97 358.2 383 51.4
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.7e-96 357.1 361 50.7
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 6.3e-96 355.1 379 49.1
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 5.4e-95 352.1 328 55.8
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 2.3e-93 346.7 329 48.3
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 2.3e-93 346.7 329 48.9
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 3.3e-92 342.8 318 53.5
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 2.3e-90 336.7 313 51.8
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 2.0e-89 333.6 313 53.7
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 1.8e-87 327.0 317 48.9
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.5e-81 307.4 346 47.1
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 1.4e-79 300.8 299 53.2
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 7.8e-78 295.0 281 54.4
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 6.6e-77 292.0 272 55.9
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 1.1e-74 284.6 265 54.3
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.6e-73 280.0 229 58.5
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 3.4e-73 279.6 370 43.2
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 1.7e-72 277.3 357 43.7
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 2.1e-70 270.4 211 61.6
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 1.4e-58 231.1 294 44.9
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 5.4e-55 219.2 123 84.6
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 5.6e-52 209.1 254 45.7
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 4.8e-51 206.1 248 44.4
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 9.9e-41 171.8 132 62.1
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 2.4e-39 167.2 234 41.9
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 3.5e-38 163.3 313 32.6
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 1.9e-36 157.5 181 42.5
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 3.3e-36 156.8 294 31.0
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 1.8e-34 151.0 123 61.0
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 1.3e-29 134.8 214 45.3
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 9.6e-28 128.6 221 35.7
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 9.0e-26 122.1 149 40.9
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 4.5e-25 119.8 77 68.8
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.6e-22 109.8 77 63.6
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 1.3e-21 108.2 102 54.9
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 2.5e-20 104.0 267 25.5
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 1.4e-18 98.2 315 24.1
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 9.0e-18 95.5 87 51.7
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 3.8e-16 90.1 91 47.3
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 1.1e-15 88.6 114 37.7
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 1.0e-13 82.0 311 23.5
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 1.4e-10 71.6 71 52.1
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 7.7e-09 65.9 70 45.7
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 1.1e-07 62.0 162 28.4
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 1.1e-07 62.0 162 28.4
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 7.9e-06 55.8 39 56.4


User provided reference genes

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