Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 8.8e-304 1046.2 547 100.0
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 2.2e-198 696.0 524 74.4
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 2.2e-198 696.0 524 74.4
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 2.2e-198 696.0 524 74.4
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 6.1e-196 688.0 525 75.6
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 3.5e-175 619.0 546 67.8
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 1.1e-173 614.0 529 68.6
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 5.2e-171 605.1 527 68.9
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 2.5e-165 586.3 524 67.6
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 1.7e-158 563.5 529 64.7
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 1.7e-150 537.0 532 63.0
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 2.5e-141 506.5 532 57.5
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 2.2e-129 466.8 529 56.0
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 3.5e-111 406.4 402 62.9
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 9.7e-101 371.7 529 49.0
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 6.3e-92 342.4 532 47.7
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 6.3e-76 289.3 530 42.6
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 1.1e-72 278.5 323 58.2
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 3.4e-69 266.9 198 77.3
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 8.0e-63 245.7 299 56.9
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 6.1e-55 219.5 232 54.7
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 1.4e-54 218.4 261 51.0
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 2.3e-54 217.6 261 50.2
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 5.2e-54 216.5 351 43.0
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 1.2e-53 215.3 261 51.7
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.7e-52 211.5 321 44.2
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 4.9e-52 209.9 263 50.6
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.1e-51 208.8 263 52.1
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 1.8e-51 208.0 292 48.3
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 2.4e-51 207.6 263 50.2
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 2.4e-51 207.6 228 56.1
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 3.2e-51 207.2 254 50.4
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 3.2e-51 207.2 263 50.2
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 4.1e-51 206.8 254 51.2
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 2.0e-50 204.5 255 49.0
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 2.7e-50 204.1 261 50.6
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 2.7e-50 204.1 230 55.2
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 3.5e-50 203.8 260 50.0
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 4.6e-50 203.4 226 54.9
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 5.9e-50 203.0 263 47.1
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 5.9e-50 203.0 292 47.9
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 7.8e-50 202.6 540 33.5
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.3e-49 201.8 373 39.7
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 1.7e-49 201.4 261 46.4
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.7e-49 201.4 263 49.0
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 3.0e-49 200.7 259 48.6
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 3.9e-49 200.3 261 45.6
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 3.9e-49 200.3 219 53.9
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 5.0e-49 199.9 255 51.4
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 1.1e-48 198.7 259 47.9
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 1.5e-48 198.4 262 47.7
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 1.5e-48 198.4 246 47.6
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 1.9e-48 198.0 256 47.3
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 2.5e-48 197.6 259 47.5
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 4.3e-48 196.8 346 40.8
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 5.6e-48 196.4 259 47.5
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 7.3e-48 196.1 283 43.1
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 7.3e-48 196.1 271 46.1
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 9.5e-48 195.7 262 47.3
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 1.2e-47 195.3 263 46.8
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 2.1e-47 194.5 356 39.3
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 2.8e-47 194.1 255 46.3
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 2.8e-47 194.1 257 47.9
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 3.6e-47 193.7 255 48.2
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 4.7e-47 193.4 260 47.3
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 6.2e-47 193.0 257 46.3
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.4e-46 191.8 257 46.3
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 1.8e-46 191.4 258 45.7
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 2.3e-46 191.0 229 51.1
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 2.3e-46 191.0 300 43.3
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 5.2e-46 189.9 260 45.8
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 8.9e-46 189.1 260 43.8
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 2.6e-45 187.6 263 46.4
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 2.6e-45 187.6 255 46.7
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 7.5e-45 186.0 260 46.9
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 9.8e-45 185.7 263 45.2
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 9.8e-45 185.7 258 45.3
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 1.7e-44 184.9 250 46.0
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 1.7e-44 184.9 317 41.6
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 4.9e-44 183.3 257 45.5
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 8.3e-44 182.6 268 45.5
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 1.4e-43 181.8 255 46.3
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.4e-43 181.8 225 47.1
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.9e-43 181.4 260 45.0
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 3.2e-43 180.6 263 45.6
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 4.1e-43 180.3 258 44.6
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 5.4e-43 179.9 286 42.3
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 9.2e-43 179.1 259 42.9
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 1.2e-42 178.7 248 45.6
BcaC08g42924 Brassica carinata HOM05D004411 ORTHO05D032367 2.0e-42 177.9 161 68.3
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 3.5e-42 177.2 222 46.4
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 1.7e-41 174.9 196 52.6
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 1.5e-40 171.8 279 41.2
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 4.3e-40 170.2 265 40.4
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 9.5e-40 169.1 125 76.0
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 9.5e-40 169.1 125 76.0
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 2.1e-39 167.9 262 42.7
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.1e-39 167.9 259 43.6
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 4.7e-39 166.8 262 42.0
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 1.4e-38 165.2 286 37.1
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 1.5e-37 161.8 255 40.0
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 4.4e-37 160.2 265 39.6
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 2.2e-36 157.9 288 41.7
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 2.4e-35 154.5 261 39.8
BolC6t35294H Brassica oleracea HOM05D004411 ORTHO05D032367 4.1e-35 153.7 194 55.7
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 1.2e-34 152.1 193 49.2
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 3.5e-34 150.6 254 40.2
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 3.9e-33 147.1 248 39.5
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 5.1e-33 146.7 257 42.0
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 1.1e-32 145.6 280 40.0
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 4.3e-32 143.7 230 40.4
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 2.8e-31 141.0 261 38.3
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 8.1e-31 139.4 331 38.1
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.8e-30 138.3 259 37.1
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 2.4e-30 137.9 260 36.5
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 2.2e-28 131.3 257 41.6
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 8.4e-28 129.4 86 80.2
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 1.4e-27 128.6 246 37.4
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 1.4e-27 128.6 220 39.5
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.4e-27 127.9 273 35.2
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.6e-26 125.2 257 38.1
A09p64030 Brassica napus HOM05D004411 ORTHO05D032662 4.6e-26 123.6 127 60.6
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 1.3e-25 122.1 146 56.8
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 5.1e-25 120.2 260 34.6
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 8.6e-25 119.4 161 53.4
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 2.5e-24 117.9 248 35.9
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 3.6e-23 114.0 196 38.3
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 6.4e-20 103.2 277 31.8
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 8.4e-20 102.8 127 46.5
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 3.5e-18 97.4 150 42.0
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 1.3e-17 95.5 117 46.2
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 5.1e-17 93.6 85 58.8
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 1.5e-16 92.0 150 41.3
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 3.3e-16 90.9 214 33.6
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 9.6e-16 89.4 92 55.4
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 2.1e-15 88.2 93 48.4
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 2.8e-15 87.8 79 57.0
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 8.1e-15 86.3 73 57.5
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 3.1e-14 84.3 90 52.2
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 4.0e-14 84.0 421 28.5
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 4.0e-14 84.0 231 29.9
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 9.9e-13 79.3 229 32.8
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 1.1e-11 75.9 129 38.0
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 1.4e-11 75.5 187 34.8
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 6.0e-10 70.1 129 38.0
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 1.0e-09 69.3 148 32.4
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 5.1e-09 67.0 129 37.2
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 7.4e-08 63.2 112 38.4
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 3.1e-06 57.8 231 26.4


User provided reference genes

Program Settings