Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 6.9e-48 193.7 105 100.0
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 7.2e-45 183.7 105 94.3
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 7.2e-45 183.7 105 94.3
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 7.2e-45 183.7 105 94.3
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 6.1e-44 180.6 105 93.3
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 6.7e-43 177.2 105 91.4
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.7e-41 172.6 107 88.8
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 3.7e-41 171.4 107 88.8
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 8.2e-41 170.2 105 89.5
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 3.1e-40 168.3 105 87.6
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 1.5e-39 166.0 107 85.0
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.6e-39 165.2 105 87.6
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 2.9e-38 161.8 107 84.1
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 2.9e-38 161.8 107 84.1
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 8.5e-38 160.2 107 81.3
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 7.0e-32 140.6 107 75.7
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 7.7e-31 137.1 105 74.3
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.2e-30 135.6 106 72.6
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 2.9e-30 135.2 106 72.6
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 2.9e-30 135.2 106 72.6
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 2.9e-30 135.2 106 72.6
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.5e-29 132.1 106 70.8
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 5.5e-29 131.0 106 68.9
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 7.2e-29 130.6 106 70.8
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 2.1e-28 129.0 107 72.0
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 2.7e-28 128.6 112 68.8
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 3.6e-28 128.3 106 69.8
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 1.0e-27 126.7 107 71.0
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 1.8e-27 125.9 107 70.1
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 1.1e-26 123.2 106 67.9
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 9.7e-26 120.2 111 67.6
Sp3g19010 Schrenkiella parvula HOM05D004268 ORTHO05D004958 2.8e-25 118.6 107 67.3
BcaB04g20616 Brassica carinata HOM05D004268 ORTHO05D004958 7.7e-23 110.5 107 64.5
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 4.2e-21 104.8 106 58.5
A03p42000 Brassica napus HOM05D004268 ORTHO05D004958 8.0e-20 100.5 107 58.9
BcaB04g19135 Brassica carinata HOM05D004268 ORTHO05D004958 1.2e-18 96.7 107 57.9
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.5e-18 96.3 113 56.6
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 2.6e-18 95.5 111 55.9
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 3.4e-18 95.1 107 57.0
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 4.8e-17 91.3 109 53.2
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.3e-17 90.9 106 56.6
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 8.3e-17 90.5 106 53.8
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 8.3e-17 90.5 105 53.3
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 1.1e-16 90.1 107 55.1
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 1.4e-16 89.7 111 55.0
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.8e-16 89.4 109 56.9
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 7.0e-16 87.4 103 56.3
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 7.0e-16 87.4 107 54.2
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 7.0e-16 87.4 107 54.2
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 9.1e-16 87.0 114 52.6
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 9.1e-16 87.0 105 51.4
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.6e-15 86.3 103 55.3
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 2.7e-15 85.5 106 54.7
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 4.5e-15 84.7 107 55.1
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.5e-15 84.7 109 50.5
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.5e-15 84.7 109 50.5
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 4.5e-15 84.7 107 51.4
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 4.5e-15 84.7 105 53.3
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 5.9e-15 84.3 107 51.4
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 7.7e-15 84.0 107 50.5
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 1.0e-14 83.6 108 51.9
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 1.0e-14 83.6 105 54.3
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 1.3e-14 83.2 102 51.0
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.7e-14 82.8 110 55.5
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 1.7e-14 82.8 107 49.5
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 1.7e-14 82.8 105 53.3
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 2.2e-14 82.4 110 51.8
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 5.0e-14 81.3 117 51.3
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 5.0e-14 81.3 107 51.4
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 6.5e-14 80.9 111 52.3
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 6.5e-14 80.9 107 52.3
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 6.5e-14 80.9 107 50.5
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.1e-13 80.1 110 47.3
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 1.1e-13 80.1 105 49.5
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.1e-13 80.1 108 51.9
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.5e-13 79.7 110 54.5
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 2.5e-13 79.0 107 51.4
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 5.5e-13 77.8 98 52.0
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 5.5e-13 77.8 105 51.4
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 7.2e-13 77.4 107 47.7
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 9.5e-13 77.0 108 49.1
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 1.2e-12 76.6 102 48.0
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 1.2e-12 76.6 109 53.2
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 1.2e-12 76.6 106 50.0
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 1.2e-12 76.6 107 50.5
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 1.6e-12 76.3 105 51.4
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 1.6e-12 76.3 110 48.2
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.6e-12 76.3 105 47.6
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 2.7e-12 75.5 104 51.0
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 2.7e-12 75.5 108 48.1
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 2.7e-12 75.5 109 47.7
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 3.6e-12 75.1 105 49.5
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 4.7e-12 74.7 107 46.7
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 4.7e-12 74.7 105 49.5
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 4.7e-12 74.7 109 47.7
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 6.1e-12 74.3 113 49.6
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 1.4e-11 73.2 108 46.3
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 1.4e-11 73.2 108 47.2
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 1.8e-11 72.8 103 46.6
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 1.8e-11 72.8 109 45.9
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 2.3e-11 72.4 105 47.6
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 3.0e-11 72.0 105 49.5
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 3.0e-11 72.0 108 47.2
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 4.0e-11 71.6 109 46.8
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 4.0e-11 71.6 112 47.3
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 6.8e-11 70.9 112 47.3
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 1.5e-10 69.7 95 52.6
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 1.5e-10 69.7 106 48.1
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.5e-10 69.7 106 48.1
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.5e-10 69.7 107 45.8
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 2.0e-10 69.3 106 49.1
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.0e-10 69.3 106 48.1
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.0e-10 69.3 41 80.5
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 2.6e-10 68.9 110 48.2
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.6e-10 68.9 106 48.1
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.6e-10 68.9 107 45.8
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 2.6e-10 68.9 107 45.8
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 2.6e-10 68.9 106 46.2
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 5.7e-10 67.8 109 45.0
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 9.8e-10 67.0 106 46.2
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 1.3e-09 66.6 109 43.1
A03p43270 Brassica napus HOM05D046874 ORTHO05D042050 1.7e-09 66.2 58 63.8
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.7e-09 66.2 86 50.0
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 1.7e-09 66.2 113 42.5
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 1.7e-09 66.2 106 44.3
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 6.3e-09 64.3 112 46.4
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 1.4e-08 63.2 102 45.1
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 1.8e-08 62.8 82 48.8
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 1.8e-08 62.8 108 42.6
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 2.4e-08 62.4 106 40.6
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 4.1e-08 61.6 111 49.5
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 4.1e-08 61.6 109 46.8
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 9.2e-08 60.5 41 78.0
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 9.2e-08 60.5 108 45.4
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 2.0e-07 59.3 108 44.4
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 2.7e-07 58.9 107 43.0
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 3.5e-07 58.5 109 46.8
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 4.5e-07 58.2 113 42.5
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 4.5e-07 58.2 108 43.5
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 5.9e-07 57.8 107 43.0
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 7.7e-07 57.4 108 39.8
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 1.7e-06 56.2 96 46.9
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 1.7e-06 56.2 89 39.3
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 2.9e-06 55.5 108 41.7
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 2.9e-06 55.5 56 53.6
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 2.9e-06 55.5 108 39.8
BcaB07g33586 Brassica carinata HOM05D004268 ORTHO05D004958 3.8e-06 55.1 106 40.6
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 3.8e-06 55.1 38 73.7
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 6.6e-06 54.3 117 37.6


User provided reference genes

Program Settings