Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26142 Brassica carinata HOM05D003993 ORTHO05D005336 3.8e-174 614.8 316 100.0
BraA01t03515Z Brassica rapa HOM05D003993 ORTHO05D005336 2.6e-98 362.8 283 67.8
Sp3g18740 Schrenkiella parvula HOM05D003993 ORTHO05D005336 5.8e-98 361.7 280 67.5
C01p43520 Brassica napus HOM05D003993 ORTHO05D005336 9.9e-98 360.9 283 67.5
BolC1t04312H Brassica oleracea HOM05D003993 ORTHO05D005336 2.9e-97 359.4 283 67.5
Thhalv10019934m.g Eutrema salsugineum HOM05D003993 ORTHO05D005336 2.9e-97 359.4 283 67.5
AL3G34640 Arabidopsis lyrata HOM05D003993 ORTHO05D005336 8.3e-97 357.8 283 66.8
A01p34110 Brassica napus HOM05D003993 ORTHO05D005336 7.1e-96 354.8 283 67.5
BcaB04g20636 Brassica carinata HOM05D003993 ORTHO05D005336 7.8e-95 351.3 283 67.1
Carub.0003s2068 Capsella rubella HOM05D003993 ORTHO05D005336 3.0e-94 349.4 283 65.0
CARHR096540 Cardamine hirsuta HOM05D003993 ORTHO05D005336 3.0e-94 349.4 283 65.0
AT3G20720 Arabidopsis thaliana HOM05D003993 ORTHO05D005336 6.6e-94 348.2 283 65.7
BcaC09g49013 Brassica carinata HOM05D003993 ORTHO05D005336 1.1e-93 347.4 283 66.4
Aa31LG8G7470 Aethionema arabicum HOM05D003993 ORTHO05D005336 1.2e-87 327.4 281 61.6
THA.LOC104817894 Tarenaya hassleriana HOM05D003993 ORTHO05D005336 8.7e-70 268.1 284 54.2
Cpa.g.sc97.71 Carica papaya HOM05D003993 ORTHO05D005336 5.1e-62 242.3 292 46.9
Thecc.07G054200 Theobroma cacao HOM05D003993 ORTHO05D005336 3.1e-59 233.0 292 45.9
COL.COLO4_09564 Corchorus olitorius HOM05D003993 ORTHO05D005336 1.0e-57 228.0 292 45.5
Gohir.A01G074400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 1.3e-57 227.6 292 45.2
Manes.15G076600 Manihot esculenta HOM05D003993 ORTHO05D005336 5.0e-57 225.7 290 44.5
Sabra11G0119600 Salix brachista HOM05D003993 ORTHO05D005336 1.4e-56 224.2 292 44.5
Prupe.4G202100 Prunus persica HOM05D003993 ORTHO05D005336 2.5e-56 223.4 292 43.2
Gohir.D01G060900 Gossypium hirsutum HOM05D003993 ORTHO05D005336 3.2e-56 223.0 292 44.5
Gorai.002G082300 Gossypium raimondii HOM05D003993 ORTHO05D005336 3.2e-56 223.0 292 44.5
Duzib170G0292 Durio zibethinus HOM05D003993 ORTHO05D005336 5.5e-56 222.2 292 44.2
FAN25G1663 Fragaria x ananassa HOM05D003993 ORTHO05D005336 3.5e-55 219.5 288 44.1
Duzib213G0987 Durio zibethinus HOM05D003993 ORTHO05D005336 6.1e-55 218.8 292 44.9
Potri.001G417200 Populus trichocarpa HOM05D003993 ORTHO05D005336 7.9e-55 218.4 292 42.8
FvH4_3g21780 Fragaria vesca HOM05D003993 ORTHO05D005336 1.3e-54 217.6 288 44.1
FAN11G2565 Fragaria x ananassa HOM05D003993 ORTHO05D005336 1.3e-54 217.6 288 44.1
CANSAT11G1844 Cannabis sativa HOM05D003993 ORTHO05D005336 3.0e-54 216.5 291 43.6
FAN16G1112 Fragaria x ananassa HOM05D003993 ORTHO05D005336 5.1e-54 215.7 288 43.4
Atru.chr2.3206 Acer truncatum HOM05D003993 ORTHO05D005336 6.7e-54 215.3 292 45.2
Haze_09608 Corylus avellana HOM05D003993 ORTHO05D005336 6.7e-54 215.3 292 43.2
GSVIVG01014604001 Vitis vinifera HOM05D003993 ORTHO05D005336 6.7e-54 215.3 269 45.0
CiPaw.11G183500 Carya illinoinensis HOM05D003993 ORTHO05D005336 2.5e-53 213.4 292 43.5
MD11G1227200 Malus domestica HOM05D003993 ORTHO05D005336 2.5e-53 213.4 292 42.5
Potri.011G132800 Populus trichocarpa HOM05D003993 ORTHO05D005336 3.3e-53 213.0 292 42.8
QL08p013350 Quercus lobata HOM05D003993 ORTHO05D005336 3.3e-53 213.0 292 44.2
CSS0014856 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 7.4e-53 211.8 292 42.1
Dinv22306 Davidia involucrata HOM05D003993 ORTHO05D005336 7.4e-53 211.8 292 42.1
CSS0003157 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 1.6e-52 210.7 292 42.1
Cfa020417 Carpinus fangiana HOM05D003993 ORTHO05D005336 2.8e-52 209.9 292 41.4
Lj3g0021702 Lotus japonicus HOM05D003993 ORTHO05D005336 2.8e-52 209.9 291 43.0
TWI38G0109 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 2.8e-52 209.9 292 42.8
Lj8C165T11 Lonicera japonica HOM05D003993 ORTHO05D005336 3.7e-52 209.5 295 42.4
RcHm_v2.0_Chr5g0037331 Rosa chinensis HOM05D003993 ORTHO05D005336 3.7e-52 209.5 294 41.5
MD03G1211800 Malus domestica HOM05D003993 ORTHO05D005336 1.8e-51 207.2 291 41.2
Ciclev10007272m.g Citrus clementina HOM05D003993 ORTHO05D005336 4.1e-51 206.1 292 42.8
TAR624G0674 Trochodendron aralioides HOM05D003993 ORTHO05D005336 4.1e-51 206.1 292 41.4
HanXRQChr11g0332991 Helianthus annuus HOM05D003993 ORTHO05D005336 9.0e-51 204.9 283 42.4
Nn1g03663 Nelumbo nucifera HOM05D003993 ORTHO05D005336 3.4e-50 203.0 292 41.1
Migut.H01858 Erythranthe guttata HOM05D003993 ORTHO05D005336 4.5e-50 202.6 291 41.9
arahy.Tifrunner.gnm1.ann1.YETR49 Arachis hypogaea HOM05D003993 ORTHO05D005336 5.9e-50 202.2 291 41.9
Lalb_Chr19g0134741 Lupinus albus HOM05D003993 ORTHO05D005336 1.0e-49 201.4 291 40.9
arahy.Tifrunner.gnm1.ann1.D8T6NU Arachis hypogaea HOM05D003993 ORTHO05D005336 1.3e-49 201.1 291 41.6
arahy.Tifrunner.gnm1.ann1.P0I1SB Arachis hypogaea HOM05D003993 ORTHO05D005336 1.3e-49 201.1 291 41.6
TAR626G1606 Trochodendron aralioides HOM05D003993 ORTHO05D005336 1.7e-49 200.7 290 42.1
Glyma.12G135700 Glycine max HOM05D003993 ORTHO05D005336 2.2e-49 200.3 292 41.4
TWI39G1096 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 2.2e-49 200.3 292 41.1
DCAR_010016 Daucus carota HOM05D003993 ORTHO05D005336 2.9e-49 199.9 291 40.9
Actinidia09963 Actinidia chinensis HOM05D003993 ORTHO05D005336 3.8e-49 199.5 291 39.9
ECA236G0263 Erigeron canadensis HOM05D003993 ORTHO05D005336 5.0e-49 199.1 291 39.9
VMungo1080G1710 Vigna mungo HOM05D003993 ORTHO05D005336 6.5e-49 198.7 292 40.4
Phvul.011G140701 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 8.5e-49 198.4 292 39.4
CAN.G337.149 Capsicum annuum HOM05D003993 ORTHO05D005336 1.1e-48 198.0 290 40.3
MBI18_g30688_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 1.9e-48 197.2 290 39.3
Nitab4.5_0009192g0040 Nicotiana tabacum HOM05D003993 ORTHO05D005336 1.9e-48 197.2 290 39.7
Phvul.005G091400 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 1.9e-48 197.2 292 40.1
Glyma.12G214500 Glycine max HOM05D003993 ORTHO05D005336 2.5e-48 196.8 292 40.1
Glyma.13G287100 Glycine max HOM05D003993 ORTHO05D005336 2.5e-48 196.8 292 40.1
Solyc07g064080.4 Solanum lycopersicum HOM05D003993 ORTHO05D005336 2.5e-48 196.8 260 44.2
Cc05_g13220 Coffea canephora HOM05D003993 ORTHO05D005336 3.2e-48 196.4 291 39.5
Lj3g0011163 Lotus japonicus HOM05D003993 ORTHO05D005336 4.2e-48 196.1 292 39.7
Sopen07g032220 Solanum pennellii HOM05D003993 ORTHO05D005336 4.2e-48 196.1 290 39.7
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 5.5e-48 195.7 274 40.1
arahy.Tifrunner.gnm1.ann1.C7DQ5B Arachis hypogaea HOM05D003993 ORTHO05D005336 7.2e-48 195.3 291 40.9
Nitab4.5_0000397g0110 Nicotiana tabacum HOM05D003993 ORTHO05D005336 7.2e-48 195.3 290 39.3
Gorai.009G427300 Gossypium raimondii HOM05D003993 ORTHO05D005336 9.4e-48 194.9 293 42.0
PGR031G1242 Punica granatum HOM05D003993 ORTHO05D005336 1.6e-47 194.1 284 41.5
Oeu032440.1 Olea europaea HOM05D003993 ORTHO05D005336 2.1e-47 193.7 291 40.2
Gohir.A04G022400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 2.7e-47 193.4 293 41.6
Peaxi162Scf01086g00149 Petunia axillaris HOM05D003993 ORTHO05D005336 2.7e-47 193.4 290 40.7
Gohir.D05G365000 Gossypium hirsutum HOM05D003993 ORTHO05D005336 4.6e-47 192.6 293 41.6
ClCG10G005790 Citrullus lanatus HOM05D003993 ORTHO05D005336 7.9e-47 191.8 292 38.7
Sed0012816 Sechium edule HOM05D003993 ORTHO05D005336 1.8e-46 190.7 292 38.4
PSO541G2178 Papaver somniferum HOM05D003993 ORTHO05D005336 2.3e-46 190.3 296 40.9
PSO675G0751 Papaver somniferum HOM05D003993 ORTHO05D005336 5.1e-46 189.1 293 40.6
vmacro11768 Vaccinium macrocarpon HOM05D003993 ORTHO05D005336 5.1e-46 189.1 163 58.9
Ca_01754_v3 Cicer arietinum L. HOM05D003993 ORTHO05D005336 6.7e-46 188.7 295 40.3
Aqoxy4G02086 Aquilegia oxysepala HOM05D003993 ORTHO05D005336 1.1e-45 188.0 157 61.1
EL10Ac4g07982 Beta vulgaris HOM05D003993 ORTHO05D005336 2.0e-45 187.2 293 38.6
CsaV3_3G005470 Cucumis sativus L. HOM05D003993 ORTHO05D005336 2.0e-45 187.2 292 39.0
Medtr4g081300 Medicago truncatula HOM05D003993 ORTHO05D005336 2.0e-45 187.2 294 39.8
ATR0073G006 Amborella trichopoda HOM05D003993 ORTHO05D005336 4.3e-45 186.0 288 39.6
MELO3C025431.2 Cucumis melo HOM05D003993 ORTHO05D005336 4.3e-45 186.0 292 39.0
Eucgr.F03424 Eucalyptus grandis HOM05D003993 ORTHO05D005336 4.3e-45 186.0 292 39.4
SalBow7G3755 Salvia bowleyana HOM05D003993 ORTHO05D005336 4.3e-45 186.0 292 39.0
A05p28100 Brassica napus HOM05D003993 ORTHO05D005336 7.4e-45 185.3 165 60.6
BraA05t21692Z Brassica rapa HOM05D003993 ORTHO05D005336 7.4e-45 185.3 165 60.6
Medtr2g082910 Medicago truncatula HOM05D003993 ORTHO05D005336 7.4e-45 185.3 292 40.4
SGA_v2.0_scaffold320G48573 Striga asiatica HOM05D003993 ORTHO05D005336 9.7e-45 184.9 285 38.6
Lsat_1_v5_gn_7_108360 Lactuca sativa HOM05D003993 ORTHO05D005336 2.8e-44 183.3 153 59.5
Psat7g122440 Pisum sativum HOM05D003993 ORTHO05D005336 2.8e-44 183.3 160 56.2
VMungo1127G1901 Vigna mungo HOM05D003993 ORTHO05D005336 3.7e-44 183.0 157 57.3
Psat5g251760 Pisum sativum HOM05D003993 ORTHO05D005336 1.8e-43 180.6 294 38.8
AUR62020558 Chenopodium quinoa HOM05D003993 ORTHO05D005336 2.4e-43 180.3 157 58.0
Ah.06g183050 Amaranthus hybridus HOM05D003993 ORTHO05D005336 4.1e-43 179.5 167 55.7
Sc16g0006470 Simmondsia chinensis HOM05D003993 ORTHO05D005336 3.4e-42 176.4 156 57.1
Lalb_Chr14g0366101 Lupinus albus HOM05D003993 ORTHO05D005336 5.9e-42 175.6 157 54.1
AUR62015640 Chenopodium quinoa HOM05D003993 ORTHO05D005336 1.7e-41 174.1 157 56.1
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 2.9e-41 173.3 288 36.8
arahy.Tifrunner.gnm1.ann1.M0TH05 Arachis hypogaea HOM05D003993 ORTHO05D005336 5.0e-41 172.6 163 52.8
Os04g0628600 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 1.0e-38 164.9 288 36.5
HPP92_011131 Vanilla planifolia HOM05D003993 ORTHO05D005336 1.8e-38 164.1 290 36.6
unitig_26.g9969 Utricularia gibba HOM05D003993 ORTHO05D005336 3.9e-38 162.9 283 35.3
Zm00001eb431410 Zea mays HOM05D003993 ORTHO05D005336 3.3e-37 159.8 278 38.5
FAN21G3569 Fragaria x ananassa HOM05D003993 ORTHO05D005336 2.8e-36 156.8 112 65.2
SEGI_25073 Sequoiadendron giganteum HOM05D003993 ORTHO05D005336 1.4e-35 154.5 178 46.6
SHI31871 Sapria himalayana HOM05D003993 ORTHO05D005336 3.1e-35 153.3 276 35.1
Pp3c10_1850 Physcomitrium patens HOM05D003993 ORTHO05D005336 1.3e-33 147.9 178 44.9
FAN21G2881 Fragaria x ananassa HOM05D003993 ORTHO05D005336 2.5e-32 143.7 226 39.4
SMO143G0035 Selaginella moellendorffii HOM05D003993 ORTHO05D005336 1.6e-31 141.0 299 30.8
Mapoly0007s0002 Marchantia polymorpha HOM05D003993 ORTHO05D005336 6.7e-30 135.6 176 42.6
AagrBONN_evm.TU.Sc2ySwM_344.1679 Anthoceros agrestis HOM05D003993 ORTHO05D005336 8.8e-30 135.2 175 44.0
TPR.G36724 Trifolium pratense HOM05D003993 ORTHO05D005336 9.7e-29 131.7 237 38.4
arahy.Tifrunner.gnm1.ann1.R5QT9H Arachis hypogaea HOM05D003993 ORTHO05D005336 2.0e-26 124.0 150 43.3
Pp3c15_5100 Physcomitrium patens HOM05D003993 ORTHO05D005336 8.0e-23 112.1 172 37.2
Hund02134 Selenicereus undatus HOM05D003993 ORTHO05D005336 1.3e-20 104.8 97 56.7
CBR_g39891 Chara braunii HOM05D003993 ORTHO05D005336 4.8e-20 102.8 116 42.2


User provided reference genes

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