Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26141 Brassica carinata HOM05D003993 ORTHO05D005336 1.5e-68 262.7 128 100.0
BcaB04g20636 Brassica carinata HOM05D003993 ORTHO05D005336 1.8e-42 176.0 131 70.2
BcaC09g49013 Brassica carinata HOM05D003993 ORTHO05D005336 1.8e-42 176.0 131 70.2
A01p34110 Brassica napus HOM05D003993 ORTHO05D005336 1.8e-42 176.0 131 70.2
C01p43520 Brassica napus HOM05D003993 ORTHO05D005336 1.8e-42 176.0 131 70.2
BolC1t04312H Brassica oleracea HOM05D003993 ORTHO05D005336 1.8e-42 176.0 131 70.2
BraA01t03515Z Brassica rapa HOM05D003993 ORTHO05D005336 1.8e-42 176.0 131 70.2
AL3G34640 Arabidopsis lyrata HOM05D003993 ORTHO05D005336 2.4e-42 175.6 131 70.2
Thhalv10019934m.g Eutrema salsugineum HOM05D003993 ORTHO05D005336 5.3e-42 174.5 131 70.2
AT3G20720 Arabidopsis thaliana HOM05D003993 ORTHO05D005336 9.0e-42 173.7 131 68.7
CARHR096540 Cardamine hirsuta HOM05D003993 ORTHO05D005336 3.4e-41 171.8 131 67.9
Carub.0003s2068 Capsella rubella HOM05D003993 ORTHO05D005336 1.3e-40 169.9 131 67.9
Aa31LG8G7470 Aethionema arabicum HOM05D003993 ORTHO05D005336 5.0e-40 167.9 131 67.2
Sp3g18740 Schrenkiella parvula HOM05D003993 ORTHO05D005336 6.5e-40 167.5 131 68.7
THA.LOC104817894 Tarenaya hassleriana HOM05D003993 ORTHO05D005336 5.7e-36 154.5 132 62.9
Duzib170G0292 Durio zibethinus HOM05D003993 ORTHO05D005336 1.1e-31 140.2 133 57.1
Gohir.D01G060900 Gossypium hirsutum HOM05D003993 ORTHO05D005336 2.5e-31 139.0 132 58.3
Gorai.002G082300 Gossypium raimondii HOM05D003993 ORTHO05D005336 2.5e-31 139.0 132 58.3
Cfa020417 Carpinus fangiana HOM05D003993 ORTHO05D005336 9.4e-31 137.1 132 55.3
COL.COLO4_09564 Corchorus olitorius HOM05D003993 ORTHO05D005336 1.6e-30 136.3 130 59.2
Haze_09608 Corylus avellana HOM05D003993 ORTHO05D005336 2.7e-30 135.6 132 55.3
Gohir.D05G365000 Gossypium hirsutum HOM05D003993 ORTHO05D005336 3.6e-30 135.2 130 56.9
Gorai.009G427300 Gossypium raimondii HOM05D003993 ORTHO05D005336 3.6e-30 135.2 130 56.9
Thecc.07G054200 Theobroma cacao HOM05D003993 ORTHO05D005336 3.6e-30 135.2 130 56.9
Gohir.A01G074400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 4.7e-30 134.8 132 56.1
PSO675G0751 Papaver somniferum HOM05D003993 ORTHO05D005336 4.7e-30 134.8 132 52.3
Gohir.A04G022400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 7.9e-30 134.0 130 56.2
RcHm_v2.0_Chr5g0037331 Rosa chinensis HOM05D003993 ORTHO05D005336 1.4e-29 133.3 132 56.8
MD03G1211800 Malus domestica HOM05D003993 ORTHO05D005336 3.0e-29 132.1 138 54.3
FAN21G3569 Fragaria x ananassa HOM05D003993 ORTHO05D005336 3.9e-29 131.7 132 54.5
CANSAT11G1844 Cannabis sativa HOM05D003993 ORTHO05D005336 6.7e-29 131.0 130 53.1
Nn1g03663 Nelumbo nucifera HOM05D003993 ORTHO05D005336 6.7e-29 131.0 125 56.0
Psat7g122440 Pisum sativum HOM05D003993 ORTHO05D005336 6.7e-29 131.0 130 54.6
FAN25G1663 Fragaria x ananassa HOM05D003993 ORTHO05D005336 8.8e-29 130.6 132 54.5
CiPaw.11G183500 Carya illinoinensis HOM05D003993 ORTHO05D005336 1.1e-28 130.2 130 53.8
Potri.001G417200 Populus trichocarpa HOM05D003993 ORTHO05D005336 1.1e-28 130.2 125 57.6
Potri.011G132800 Populus trichocarpa HOM05D003993 ORTHO05D005336 1.1e-28 130.2 125 56.0
Dinv22306 Davidia involucrata HOM05D003993 ORTHO05D005336 1.5e-28 129.8 130 54.6
MD11G1227200 Malus domestica HOM05D003993 ORTHO05D005336 2.0e-28 129.4 132 52.3
PSO541G2178 Papaver somniferum HOM05D003993 ORTHO05D005336 2.0e-28 129.4 132 50.8
Sabra11G0119600 Salix brachista HOM05D003993 ORTHO05D005336 2.0e-28 129.4 125 56.0
Ciclev10007272m.g Citrus clementina HOM05D003993 ORTHO05D005336 2.6e-28 129.0 132 53.0
Duzib213G0987 Durio zibethinus HOM05D003993 ORTHO05D005336 2.6e-28 129.0 130 53.8
Actinidia09963 Actinidia chinensis HOM05D003993 ORTHO05D005336 3.3e-28 128.6 132 53.8
CSS0003157 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 3.3e-28 128.6 138 50.7
CSS0014856 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 3.3e-28 128.6 138 50.7
FAN16G1112 Fragaria x ananassa HOM05D003993 ORTHO05D005336 3.3e-28 128.6 132 53.8
Atru.chr2.3206 Acer truncatum HOM05D003993 ORTHO05D005336 4.4e-28 128.3 132 53.8
Lalb_Chr19g0134741 Lupinus albus HOM05D003993 ORTHO05D005336 4.4e-28 128.3 130 53.1
FvH4_3g21780 Fragaria vesca HOM05D003993 ORTHO05D005336 5.7e-28 127.9 132 53.0
FAN11G2565 Fragaria x ananassa HOM05D003993 ORTHO05D005336 5.7e-28 127.9 132 53.0
Manes.15G076600 Manihot esculenta HOM05D003993 ORTHO05D005336 7.4e-28 127.5 132 54.5
Prupe.4G202100 Prunus persica HOM05D003993 ORTHO05D005336 7.4e-28 127.5 138 52.2
PGR031G1242 Punica granatum HOM05D003993 ORTHO05D005336 9.7e-28 127.1 125 57.6
TAR626G1606 Trochodendron aralioides HOM05D003993 ORTHO05D005336 1.7e-27 126.3 132 52.3
Lj3g0021702 Lotus japonicus HOM05D003993 ORTHO05D005336 2.8e-27 125.6 130 53.1
QL08p013350 Quercus lobata HOM05D003993 ORTHO05D005336 2.8e-27 125.6 124 54.0
CsaV3_3G005470 Cucumis sativus L. HOM05D003993 ORTHO05D005336 3.7e-27 125.2 132 51.5
MELO3C025431.2 Cucumis melo HOM05D003993 ORTHO05D005336 4.8e-27 124.8 132 50.8
TAR624G0674 Trochodendron aralioides HOM05D003993 ORTHO05D005336 4.8e-27 124.8 132 54.5
ClCG10G005790 Citrullus lanatus HOM05D003993 ORTHO05D005336 6.3e-27 124.4 132 50.8
Medtr2g082910 Medicago truncatula HOM05D003993 ORTHO05D005336 8.2e-27 124.0 128 53.1
Sed0012816 Sechium edule HOM05D003993 ORTHO05D005336 8.2e-27 124.0 132 50.8
Medtr4g081300 Medicago truncatula HOM05D003993 ORTHO05D005336 1.1e-26 123.6 130 53.1
Ca_01754_v3 Cicer arietinum L. HOM05D003993 ORTHO05D005336 1.4e-26 123.2 128 53.1
MBI18_g30688_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 1.4e-26 123.2 132 50.8
SGA_v2.0_scaffold320G48573 Striga asiatica HOM05D003993 ORTHO05D005336 1.4e-26 123.2 135 49.6
Oeu032440.1 Olea europaea HOM05D003993 ORTHO05D005336 3.1e-26 122.1 140 50.7
arahy.Tifrunner.gnm1.ann1.M0TH05 Arachis hypogaea HOM05D003993 ORTHO05D005336 4.1e-26 121.7 124 54.8
Eucgr.F03424 Eucalyptus grandis HOM05D003993 ORTHO05D005336 4.1e-26 121.7 130 52.3
Migut.H01858 Erythranthe guttata HOM05D003993 ORTHO05D005336 5.3e-26 121.3 133 52.6
SalBow7G3755 Salvia bowleyana HOM05D003993 ORTHO05D005336 7.0e-26 120.9 124 55.6
vmacro11768 Vaccinium macrocarpon HOM05D003993 ORTHO05D005336 9.1e-26 120.6 138 46.4
Lj8C165T11 Lonicera japonica HOM05D003993 ORTHO05D005336 1.2e-25 120.2 130 52.3
Phvul.005G091400 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 1.2e-25 120.2 128 51.6
AUR62015640 Chenopodium quinoa HOM05D003993 ORTHO05D005336 1.5e-25 119.8 130 50.0
EL10Ac4g07982 Beta vulgaris HOM05D003993 ORTHO05D005336 2.0e-25 119.4 130 51.5
Psat5g251760 Pisum sativum HOM05D003993 ORTHO05D005336 2.0e-25 119.4 128 51.6
Cpa.g.sc97.71 Carica papaya HOM05D003993 ORTHO05D005336 2.6e-25 119.0 138 50.7
HanXRQChr11g0332991 Helianthus annuus HOM05D003993 ORTHO05D005336 2.6e-25 119.0 130 50.8
TWI38G0109 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 2.6e-25 119.0 130 50.0
Glyma.12G135700 Glycine max HOM05D003993 ORTHO05D005336 3.5e-25 118.6 130 51.5
TWI39G1096 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 3.5e-25 118.6 130 51.5
VMungo1080G1710 Vigna mungo HOM05D003993 ORTHO05D005336 3.5e-25 118.6 125 51.2
arahy.Tifrunner.gnm1.ann1.C7DQ5B Arachis hypogaea HOM05D003993 ORTHO05D005336 4.5e-25 118.2 130 49.2
arahy.Tifrunner.gnm1.ann1.YETR49 Arachis hypogaea HOM05D003993 ORTHO05D005336 4.5e-25 118.2 130 49.2
Lalb_Chr14g0366101 Lupinus albus HOM05D003993 ORTHO05D005336 4.5e-25 118.2 128 50.8
ECA236G0263 Erigeron canadensis HOM05D003993 ORTHO05D005336 5.9e-25 117.9 130 50.8
Glyma.12G214500 Glycine max HOM05D003993 ORTHO05D005336 5.9e-25 117.9 128 50.8
Lj3g0011163 Lotus japonicus HOM05D003993 ORTHO05D005336 5.9e-25 117.9 125 51.2
arahy.Tifrunner.gnm1.ann1.P0I1SB Arachis hypogaea HOM05D003993 ORTHO05D005336 1.0e-24 117.1 130 48.5
Ah.06g183050 Amaranthus hybridus HOM05D003993 ORTHO05D005336 1.3e-24 116.7 130 47.7
Cc05_g13220 Coffea canephora HOM05D003993 ORTHO05D005336 1.7e-24 116.3 132 48.5
SEGI_25073 Sequoiadendron giganteum HOM05D003993 ORTHO05D005336 2.2e-24 115.9 126 50.8
Lsat_1_v5_gn_7_108360 Lactuca sativa HOM05D003993 ORTHO05D005336 2.9e-24 115.5 125 52.0
Phvul.011G140701 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 2.9e-24 115.5 128 50.0
Glyma.13G287100 Glycine max HOM05D003993 ORTHO05D005336 5.0e-24 114.8 128 50.0
DCAR_010016 Daucus carota HOM05D003993 ORTHO05D005336 6.5e-24 114.4 132 49.2
ATR0073G006 Amborella trichopoda HOM05D003993 ORTHO05D005336 8.5e-24 114.0 131 48.1
Aqoxy4G02086 Aquilegia oxysepala HOM05D003993 ORTHO05D005336 1.1e-23 113.6 127 49.6
Sc16g0006470 Simmondsia chinensis HOM05D003993 ORTHO05D005336 1.1e-23 113.6 130 49.2
Solyc07g064080.4 Solanum lycopersicum HOM05D003993 ORTHO05D005336 1.1e-23 113.6 133 53.4
Sopen07g032220 Solanum pennellii HOM05D003993 ORTHO05D005336 1.1e-23 113.6 133 53.4
Nitab4.5_0009192g0040 Nicotiana tabacum HOM05D003993 ORTHO05D005336 1.9e-23 112.8 131 51.9
CAN.G337.149 Capsicum annuum HOM05D003993 ORTHO05D005336 2.5e-23 112.5 129 54.3
arahy.Tifrunner.gnm1.ann1.D8T6NU Arachis hypogaea HOM05D003993 ORTHO05D005336 3.2e-23 112.1 130 47.7
Os04g0628600 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 4.2e-23 111.7 130 44.6
SHI31871 Sapria himalayana HOM05D003993 ORTHO05D005336 9.4e-23 110.5 135 47.4
HPP92_011131 Vanilla planifolia HOM05D003993 ORTHO05D005336 1.2e-22 110.2 131 48.1
GSVIVG01014604001 Vitis vinifera HOM05D003993 ORTHO05D005336 1.2e-22 110.2 109 55.0
Nitab4.5_0000397g0110 Nicotiana tabacum HOM05D003993 ORTHO05D005336 1.6e-22 109.8 80 70.0
Peaxi162Scf01086g00149 Petunia axillaris HOM05D003993 ORTHO05D005336 1.6e-22 109.8 132 49.2
Zm00001eb431410 Zea mays HOM05D003993 ORTHO05D005336 4.7e-22 108.2 130 44.6
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 6.1e-22 107.8 130 47.7
arahy.Tifrunner.gnm1.ann1.UE9C9H Arachis hypogaea HOM05D003993 ORTHO05D005336 1.8e-21 106.3 81 64.2
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 3.3e-20 102.1 125 44.8
AUR62020558 Chenopodium quinoa HOM05D003993 ORTHO05D005336 2.0e-17 92.8 70 64.3
AagrBONN_evm.TU.Sc2ySwM_344.1679 Anthoceros agrestis HOM05D003993 ORTHO05D005336 3.5e-17 92.0 132 39.4
SMO143G0035 Selaginella moellendorffii HOM05D003993 ORTHO05D005336 7.7e-17 90.9 128 42.2
Pp3c10_1850 Physcomitrium patens HOM05D003993 ORTHO05D005336 1.0e-16 90.5 133 39.1
Mapoly0007s0002 Marchantia polymorpha HOM05D003993 ORTHO05D005336 1.1e-15 87.0 130 37.7
Pp3c15_5100 Physcomitrium patens HOM05D003993 ORTHO05D005336 1.4e-10 70.1 83 39.8
CBR_g39891 Chara braunii HOM05D003993 ORTHO05D005336 2.7e-09 65.9 126 31.7
TPR.G36724 Trifolium pratense HOM05D003993 ORTHO05D005336 2.2e-08 62.8 82 43.9
VMungo1127G1901 Vigna mungo HOM05D003993 ORTHO05D005336 1.9e-07 59.7 47 61.7
unitig_26.g9969 Utricularia gibba HOM05D003993 ORTHO05D005336 1.2e-06 57.0 51 56.9
arahy.Tifrunner.gnm1.ann1.R5QT9H Arachis hypogaea HOM05D003993 ORTHO05D005336 3.6e-06 55.5 71 45.1
HanXRQChr08g0234101 Helianthus annuus HOM05D003993 ORTHO05D005336 4.7e-06 55.1 125 35.2


User provided reference genes

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