Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 6.6e-143 510.8 271 100.0
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 6.0e-128 461.1 271 90.0
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 2.5e-126 455.7 271 87.8
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 1.3e-125 453.4 273 89.0
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 1.3e-125 453.4 273 89.0
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.6e-125 453.0 273 89.7
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 2.5e-110 402.5 264 82.6
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 3.4e-99 365.5 263 77.2
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 7.9e-96 354.4 263 76.0
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 1.7e-93 346.7 264 75.4
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 2.2e-93 346.3 264 75.0
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 5.1e-87 325.1 264 72.3
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 1.1e-78 297.4 254 71.3
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.0e-58 231.1 176 71.6
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 6.3e-53 211.8 261 46.4
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 3.1e-52 209.5 261 47.1
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 9.2e-52 208.0 254 50.8
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.7e-51 206.5 253 49.0
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 5.9e-51 205.3 253 48.6
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.0e-50 204.5 272 50.7
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 1.7e-50 203.8 254 53.5
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 8.6e-50 201.4 270 50.0
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.1e-49 201.1 262 49.6
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.5e-49 199.9 261 50.6
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 3.3e-49 199.5 272 50.4
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 3.3e-49 199.5 255 51.8
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 5.6e-49 198.7 255 51.0
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.2e-48 197.6 270 48.1
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.6e-48 197.2 262 48.1
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 6.1e-48 195.3 265 49.4
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 6.1e-48 195.3 256 51.2
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 8.0e-48 194.9 258 47.3
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.0e-47 194.5 254 50.4
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 2.3e-47 193.4 274 47.8
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 4.0e-47 192.6 254 49.2
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 6.8e-47 191.8 259 49.0
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 6.8e-47 191.8 256 46.9
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 8.9e-47 191.4 271 45.4
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 1.2e-46 191.0 274 47.4
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.2e-46 191.0 255 48.6
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 1.2e-46 191.0 256 47.7
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.5e-46 190.7 263 52.1
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 2.6e-46 189.9 258 48.4
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 2.6e-46 189.9 269 50.2
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 2.6e-46 189.9 260 48.5
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 3.4e-46 189.5 257 48.6
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 5.8e-46 188.7 259 47.5
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 7.5e-46 188.3 263 51.7
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 7.5e-46 188.3 261 46.4
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 1.3e-45 187.6 256 48.0
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.7e-45 187.2 276 47.1
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 2.2e-45 186.8 253 47.8
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 2.9e-45 186.4 256 46.5
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 3.7e-45 186.0 258 45.3
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 4.9e-45 185.7 253 49.4
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 4.9e-45 185.7 253 49.4
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 1.1e-44 184.5 264 45.1
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 1.9e-44 183.7 258 45.7
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 2.4e-44 183.3 262 47.7
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 3.2e-44 183.0 268 46.3
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 4.1e-44 182.6 270 48.5
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 4.1e-44 182.6 259 48.6
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.4e-44 182.2 204 53.9
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 5.4e-44 182.2 254 47.2
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 9.2e-44 181.4 266 45.1
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 2.7e-43 179.9 259 46.3
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 3.5e-43 179.5 264 43.9
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 4.6e-43 179.1 269 43.9
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 7.8e-43 178.3 252 47.2
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 3.9e-42 176.0 264 46.2
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 3.9e-42 176.0 173 54.3
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 8.6e-42 174.9 256 44.9
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 8.6e-42 174.9 261 47.5
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.1e-41 174.5 233 48.9
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 1.5e-41 174.1 263 44.9
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.9e-41 173.7 258 47.3
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 3.3e-41 172.9 257 46.7
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 4.3e-41 172.6 256 46.5
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 5.6e-41 172.2 257 44.7
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 7.3e-41 171.8 263 42.2
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.6e-40 170.6 256 45.7
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 2.1e-40 170.2 265 43.8
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 2.8e-40 169.9 256 41.4
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.8e-40 169.9 259 46.3
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.7e-40 169.1 271 42.4
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 6.2e-40 168.7 262 43.9
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 8.0e-40 168.3 256 45.7
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 8.0e-40 168.3 256 44.9
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 8.0e-40 168.3 269 44.6
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 8.0e-40 168.3 256 39.8
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 1.1e-39 167.9 257 45.5
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.1e-39 167.9 255 47.1
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.4e-39 167.5 162 54.3
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 4.0e-39 166.0 263 44.9
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 4.0e-39 166.0 256 42.2
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 5.2e-39 165.6 259 47.9
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 8.9e-39 164.9 263 43.3
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 8.9e-39 164.9 255 43.1
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 1.2e-38 164.5 252 45.2
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.5e-38 164.1 213 52.1
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 1.5e-38 164.1 255 47.1
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 4.4e-38 162.5 259 43.2
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.3e-37 161.0 162 53.1
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.7e-37 160.6 287 41.8
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 2.9e-37 159.8 264 42.0
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 3.7e-37 159.5 279 41.6
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 1.4e-36 157.5 258 46.9
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 4.1e-36 156.0 265 40.4
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 9.2e-36 154.8 258 42.6
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 1.2e-35 154.5 255 40.4
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 3.5e-35 152.9 260 42.7
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 7.8e-35 151.8 180 55.6
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 1.0e-34 151.4 320 36.2
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 1.0e-34 151.4 163 51.5
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 1.7e-34 150.6 267 43.1
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 5.1e-34 149.1 257 40.9
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 7.3e-33 145.2 285 37.5
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 2.1e-32 143.7 260 41.2
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 1.4e-31 141.0 271 43.5
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.2e-30 137.9 269 41.3
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 4.4e-30 136.0 162 46.3
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 9.2e-28 128.3 368 32.1
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 2.1e-24 117.1 187 39.6
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.4e-23 114.4 156 43.6
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 5.2e-23 112.5 153 47.7
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 5.2e-23 112.5 140 47.9
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.2e-22 111.3 127 49.6
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 7.6e-22 108.6 257 40.9
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 7.6e-22 108.6 124 48.4
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 5.4e-20 102.4 197 34.5
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 5.4e-20 102.4 290 32.8
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 6.0e-19 99.0 223 32.7
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 3.9e-18 96.3 147 44.2
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.9e-17 94.0 132 49.2
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 7.3e-17 92.0 235 30.2
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 6.2e-16 89.0 131 51.9
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 1.1e-15 88.2 162 38.3
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.5e-14 84.3 151 33.8
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 7.6e-14 82.0 122 41.8
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.2e-13 80.5 159 40.3
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 4.9e-13 79.3 57 61.4
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 8.4e-13 78.6 198 32.8
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 9.3e-12 75.1 131 46.6
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.0e-10 71.6 53 64.2
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 2.6e-06 57.0 39 59.0
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 2.6e-06 57.0 39 59.0
MCO09G383 Micromonas commoda HOM05D004579 ORTHO05D005376 3.4e-06 56.6 94 30.9


User provided reference genes

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