Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26050 Brassica carinata HOM05D006509 ORTHO05D008144 4.0e-179 631.3 324 100.0
C05p44930 Brassica napus HOM05D006509 ORTHO05D008144 5.6e-165 584.3 325 90.8
BolC5t33216H Brassica oleracea HOM05D006509 ORTHO05D008144 5.6e-165 584.3 325 90.8
BcaC05g28409 Brassica carinata HOM05D006509 ORTHO05D008144 1.1e-163 580.1 325 90.2
BraA05t21822Z Brassica rapa HOM05D006509 ORTHO05D008144 8.7e-158 560.5 331 88.8
A05p29310 Brassica napus HOM05D006509 ORTHO05D008144 4.9e-153 544.7 331 84.9
Sp3g17820 Schrenkiella parvula HOM05D006509 ORTHO05D008144 2.1e-148 529.3 333 84.4
Thhalv10021111m.g Eutrema salsugineum HOM05D006509 ORTHO05D008144 1.4e-147 526.6 332 82.8
AL3G33260 Arabidopsis lyrata HOM05D006509 ORTHO05D008144 1.5e-146 523.1 329 82.7
AT3G19810 Arabidopsis thaliana HOM05D006509 ORTHO05D008144 1.6e-143 513.1 329 82.1
Carub.0003s1969 Capsella rubella HOM05D006509 ORTHO05D008144 3.5e-143 511.9 326 78.8
CARHR095320 Cardamine hirsuta HOM05D006509 ORTHO05D008144 6.7e-142 507.7 330 82.1
Aa31LG8G6580 Aethionema arabicum HOM05D006509 ORTHO05D008144 3.1e-131 472.2 329 75.7
THA.LOC104800032 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 3.1e-123 445.7 328 67.7
THA.LOC104814131 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 6.1e-119 431.4 328 65.9
Thecc.01G136400 Theobroma cacao HOM05D006509 ORTHO05D008144 4.8e-100 368.6 258 66.7
Duzib264G0706 Durio zibethinus HOM05D006509 ORTHO05D008144 1.1e-99 367.5 258 66.7
Ciclev10032158m.g Citrus clementina HOM05D006509 ORTHO05D008144 2.7e-98 362.8 252 67.9
Gorai.010G244900 Gossypium raimondii HOM05D006509 ORTHO05D008144 2.7e-98 362.8 262 66.4
Atru.chr11.1320 Acer truncatum HOM05D006509 ORTHO05D008144 5.9e-98 361.7 241 69.7
Gohir.D13G187200 Gossypium hirsutum HOM05D006509 ORTHO05D008144 7.7e-98 361.3 264 65.9
Atru.chr11.1232 Acer truncatum HOM05D006509 ORTHO05D008144 1.0e-97 360.9 241 69.3
TAR629G0624 Trochodendron aralioides HOM05D006509 ORTHO05D008144 2.0e-93 346.7 262 63.7
Gohir.A09G005300 Gossypium hirsutum HOM05D006509 ORTHO05D008144 2.6e-93 346.3 247 67.6
Gohir.D09G004600 Gossypium hirsutum HOM05D006509 ORTHO05D008144 1.7e-92 343.6 248 67.7
Gorai.006G006200 Gossypium raimondii HOM05D006509 ORTHO05D008144 3.7e-92 342.4 248 67.3
GSVIVG01010764001 Vitis vinifera HOM05D006509 ORTHO05D008144 3.2e-91 339.3 254 66.1
Eucgr.G02566 Eucalyptus grandis HOM05D006509 ORTHO05D008144 5.4e-91 338.6 253 66.0
CANSAT56G2102 Cannabis sativa HOM05D006509 ORTHO05D008144 9.2e-91 337.8 245 66.1
Manes.09G055500 Manihot esculenta HOM05D006509 ORTHO05D008144 1.2e-90 337.4 288 59.0
Nn1g04452 Nelumbo nucifera HOM05D006509 ORTHO05D008144 2.0e-90 336.7 245 66.9
Gohir.A13G179100 Gossypium hirsutum HOM05D006509 ORTHO05D008144 4.5e-90 335.5 228 69.3
Nitab4.5_0002192g0100 Nicotiana tabacum HOM05D006509 ORTHO05D008144 5.9e-90 335.1 330 56.1
EL10Ac9g22921 Beta vulgaris HOM05D006509 ORTHO05D008144 7.8e-90 334.7 251 67.7
Peaxi162Scf00818g00020 Petunia axillaris HOM05D006509 ORTHO05D008144 1.0e-89 334.3 291 60.5
TWI74G1084 Tripterygium wilfordii HOM05D006509 ORTHO05D008144 2.5e-88 329.7 311 57.2
Cfa008714 Carpinus fangiana HOM05D006509 ORTHO05D008144 5.6e-88 328.6 250 65.6
CiPaw.05G167100 Carya illinoinensis HOM05D006509 ORTHO05D008144 1.2e-87 327.4 328 56.7
Haze_11724 Corylus avellana HOM05D006509 ORTHO05D008144 1.2e-87 327.4 250 65.2
arahy.Tifrunner.gnm1.ann1.LJ2JSE Arachis hypogaea HOM05D006509 ORTHO05D008144 2.8e-87 326.2 250 64.8
arahy.Tifrunner.gnm1.ann1.4V51TJ Arachis hypogaea HOM05D006509 ORTHO05D008144 3.6e-87 325.9 253 64.4
RcHm_v2.0_Chr1g0363071 Rosa chinensis HOM05D006509 ORTHO05D008144 3.6e-87 325.9 253 65.2
DCAR_030403 Daucus carota HOM05D006509 ORTHO05D008144 6.1e-87 325.1 252 63.5
arahy.Tifrunner.gnm1.ann1.IV5K9E Arachis hypogaea HOM05D006509 ORTHO05D008144 1.0e-86 324.3 253 64.0
arahy.Tifrunner.gnm1.ann1.6728UU Arachis hypogaea HOM05D006509 ORTHO05D008144 1.4e-86 323.9 251 64.9
CAN.G157.10 Capsicum annuum HOM05D006509 ORTHO05D008144 1.4e-86 323.9 249 65.1
PGSC0003DMG400019835 Solanum tuberosum HOM05D006509 ORTHO05D008144 1.8e-86 323.6 248 65.3
FAN03G0898 Fragaria x ananassa HOM05D006509 ORTHO05D008144 2.3e-86 323.2 254 64.6
FvH4_7g19250 Fragaria vesca HOM05D006509 ORTHO05D008144 4.0e-86 322.4 254 64.6
FAN06G0528 Fragaria x ananassa HOM05D006509 ORTHO05D008144 4.0e-86 322.4 254 64.6
Hund08535 Selenicereus undatus HOM05D006509 ORTHO05D008144 4.0e-86 322.4 337 51.3
FAN01G2825 Fragaria x ananassa HOM05D006509 ORTHO05D008144 5.2e-86 322.0 254 64.6
Sed0013319 Sechium edule HOM05D006509 ORTHO05D008144 5.2e-86 322.0 250 63.2
CSS0015169 Camellia sinensis var. sinensis HOM05D006509 ORTHO05D008144 8.9e-86 321.2 247 66.8
Lalb_Chr13g0295231 Lupinus albus HOM05D006509 ORTHO05D008144 8.9e-86 321.2 248 64.5
QL03p043626 Quercus lobata HOM05D006509 ORTHO05D008144 8.9e-86 321.2 249 63.9
Sc06g0007860 Simmondsia chinensis HOM05D006509 ORTHO05D008144 1.2e-85 320.9 244 63.9
PGR004G1007 Punica granatum HOM05D006509 ORTHO05D008144 2.0e-85 320.1 265 61.1
Lj4g0012507 Lotus japonicus HOM05D006509 ORTHO05D008144 7.5e-85 318.2 304 54.3
TPR.G6737 Trifolium pratense HOM05D006509 ORTHO05D008144 9.8e-85 317.8 310 56.5
Hma1.2p1_1005F.1_g246910 Hydrangea macrophylla HOM05D006509 ORTHO05D008144 1.3e-84 317.4 328 54.0
MD01G1107600 Malus domestica HOM05D006509 ORTHO05D008144 1.7e-84 317.0 252 62.3
Solyc02g021050.3 Solanum lycopersicum HOM05D006509 ORTHO05D008144 1.7e-84 317.0 296 57.1
ClCG09G005710 Citrullus lanatus HOM05D006509 ORTHO05D008144 3.7e-84 315.8 251 62.2
Ca_17903_v3 Cicer arietinum L. HOM05D006509 ORTHO05D008144 8.3e-84 314.7 303 54.5
Phvul.002G240600 Phaseolus vulgaris HOM05D006509 ORTHO05D008144 1.1e-83 314.3 326 52.8
Sopen02g005330 Solanum pennellii HOM05D006509 ORTHO05D008144 1.9e-83 313.5 296 56.4
Glyma.05G160301 Glycine max HOM05D006509 ORTHO05D008144 2.4e-83 313.2 326 52.8
Sabra10G0129900 Salix brachista HOM05D006509 ORTHO05D008144 1.6e-82 310.5 254 61.0
PSO017G6086 Papaver somniferum HOM05D006509 ORTHO05D008144 2.0e-82 310.1 251 60.6
CsaV3_7G029430 Cucumis sativus L. HOM05D006509 ORTHO05D008144 2.7e-82 309.7 250 61.6
Prupe.2G212300 Prunus persica HOM05D006509 ORTHO05D008144 2.7e-82 309.7 251 59.8
Potri.010G170100 Populus trichocarpa HOM05D006509 ORTHO05D008144 3.5e-82 309.3 259 58.7
VMungo0251G2215 Vigna mungo HOM05D006509 ORTHO05D008144 6.0e-82 308.5 235 63.0
CDE04G0697 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 1.0e-81 307.8 241 61.4
CDE07G1911 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 1.0e-81 307.8 239 61.1
vmacro14294 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 1.7e-81 307.0 249 62.7
vmacro23064 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 1.7e-81 307.0 249 62.7
MSTRG.22733 Avicennia marina HOM05D006509 ORTHO05D008144 3.0e-81 306.2 246 63.8
Medtr8g086630 Medicago truncatula HOM05D006509 ORTHO05D008144 3.9e-81 305.8 310 53.2
Actinidia04136 Actinidia chinensis HOM05D006509 ORTHO05D008144 6.6e-81 305.1 247 61.5
Lsat_1_v5_gn_3_32880 Lactuca sativa HOM05D006509 ORTHO05D008144 6.6e-81 305.1 262 56.1
PSO478G1783 Papaver somniferum HOM05D006509 ORTHO05D008144 6.6e-81 305.1 251 59.4
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 9.5e-80 301.2 235 64.3
HanXRQChr06g0171951 Helianthus annuus HOM05D006509 ORTHO05D008144 4.7e-79 298.9 335 49.0
Aqoxy4G00161 Aquilegia oxysepala HOM05D006509 ORTHO05D008144 1.1e-78 297.7 266 57.9
AUR62017665 Chenopodium quinoa HOM05D006509 ORTHO05D008144 6.8e-78 295.0 246 60.2
Migut.I00780 Erythranthe guttata HOM05D006509 ORTHO05D008144 4.4e-77 292.4 249 58.2
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 7.5e-77 291.6 213 66.2
SGA_v2.0_scaffold5G02679 Striga asiatica HOM05D006509 ORTHO05D008144 1.4e-75 287.3 253 57.7
SalBow2G3295 Salvia bowleyana HOM05D006509 ORTHO05D008144 2.4e-75 286.6 231 58.4
ATR0618G169 Amborella trichopoda HOM05D006509 ORTHO05D008144 3.2e-75 286.2 264 54.5
MBI06_g12322_MAGBIO Magnolia biondii HOM05D006509 ORTHO05D008144 1.2e-74 284.3 241 60.6
Psat7g069200 Pisum sativum HOM05D006509 ORTHO05D008144 2.5e-72 276.6 259 53.3
MELO3C015985.2 Cucumis melo HOM05D006509 ORTHO05D008144 1.8e-70 270.4 214 63.6
Rhsim01G0196900 Rhododendron simsii HOM05D006509 ORTHO05D008144 6.8e-70 268.5 322 48.8
Migut.I00779 Erythranthe guttata HOM05D006509 ORTHO05D008144 9.9e-69 264.6 245 55.5
Lj6C721T21 Lonicera japonica HOM05D006509 ORTHO05D008144 1.2e-66 257.7 307 46.6
Os02g0831200 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 2.3e-65 253.4 238 55.5
Zm00001eb259480 Zea mays HOM05D006509 ORTHO05D008144 8.7e-57 224.9 299 47.2
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 4.0e-54 216.1 167 62.9
Medtr4g086490 Medicago truncatula HOM05D000001 ORTHO05D000003 5.8e-53 212.2 271 46.1
AUR62015202 Chenopodium quinoa HOM05D006509 ORTHO05D008144 1.6e-50 204.1 159 64.8
COL.COLO4_35800 Corchorus olitorius HOM05D006509 ORTHO05D008144 6.0e-50 202.2 145 67.6
SEGI_16170 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 1.1e-48 198.0 243 47.3
SEGI_30002 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 1.1e-48 198.0 238 46.6
CBR_g57847 Chara braunii HOM05D006509 ORTHO05D008144 3.6e-47 193.0 265 40.4
Mapoly0002s0264 Marchantia polymorpha HOM05D006509 ORTHO05D008144 5.3e-46 189.1 244 41.4
Pp3c4_29820 Physcomitrium patens HOM05D006509 ORTHO05D008144 9.0e-46 188.3 249 42.6
AUR62014968 Chenopodium quinoa HOM05D006509 ORTHO05D008144 1.6e-42 177.6 137 63.5
FAN10G0955 Fragaria x ananassa HOM05D006509 ORTHO05D008144 4.6e-42 176.0 194 52.1
Dinv39609 Davidia involucrata HOM05D006509 ORTHO05D008144 3.0e-41 173.3 183 52.5
Cpa.g.sc63.3 Carica papaya HOM05D006509 ORTHO05D008144 1.1e-40 171.4 112 73.2
unitig_747.g21717 Utricularia gibba HOM05D006509 ORTHO05D008144 1.5e-40 171.0 157 52.2
ECA246G0117 Erigeron canadensis HOM05D006509 ORTHO05D008144 6.2e-39 165.6 109 68.8
Cc03_g14920 Coffea canephora HOM05D006509 ORTHO05D008144 1.4e-38 164.5 140 58.6
AUR62018171 Chenopodium quinoa HOM05D006509 ORTHO05D008144 2.7e-34 150.2 108 65.7
Glyma.08G117902 Glycine max HOM05D006509 ORTHO05D008144 1.1e-32 144.8 132 56.1
Cc00_g35200 Coffea canephora HOM05D006509 ORTHO05D008144 1.3e-31 141.4 97 68.0
Os04g0108300 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 1.6e-31 141.0 124 54.0
BolC5t33213H Brassica oleracea HOM05D006509 ORTHO05D008144 6.5e-28 129.0 102 69.6
Oeu049185.1 Olea europaea HOM05D006509 ORTHO05D008144 1.3e-25 121.3 110 56.4
AagrBONN_evm.TU.Sc2ySwM_362.2130 Anthoceros agrestis HOM05D006509 ORTHO05D008144 7.4e-24 115.5 240 35.4
FAN01G0805 Fragaria x ananassa HOM05D006509 ORTHO05D008144 1.0e-17 95.1 64 70.3
Oeu033605.1 Olea europaea HOM05D006509 ORTHO05D008144 3.3e-08 63.5 48 56.2
Ca_19971_v3 Cicer arietinum L. HOM05D000020 ORTHO05D000156 1.3e-07 61.6 79 45.6


User provided reference genes

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