Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 1.1e-62 243.0 111 100.0
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 4.3e-56 221.1 111 91.9
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 4.3e-56 221.1 111 91.9
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 2.1e-55 218.8 111 91.0
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 2.1e-55 218.8 111 91.0
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 2.1e-55 218.8 111 91.0
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 6.0e-50 200.7 111 80.2
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 6.0e-50 200.7 112 82.1
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 1.3e-49 199.5 114 81.6
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 3.3e-48 194.9 111 80.2
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 3.3e-48 194.9 111 80.2
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 4.3e-48 194.5 111 80.2
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 4.3e-48 194.5 111 80.2
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 9.6e-48 193.4 111 80.2
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 1.8e-46 189.1 111 76.6
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 9.9e-45 183.3 111 73.0
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 5.4e-43 177.6 110 75.5
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 1.6e-42 176.0 97 79.4
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 5.1e-41 171.0 113 73.5
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 9.0e-38 160.2 109 72.5
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 5.3e-30 134.4 67 86.6
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 4.9e-28 127.9 76 76.3
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.2e-20 102.4 109 45.0
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 3.8e-20 101.7 109 45.0
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 2.5e-19 99.0 110 46.4
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 4.2e-19 98.2 111 45.0
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 7.1e-19 97.4 109 43.1
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 1.6e-18 96.3 110 43.6
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 1.6e-18 96.3 105 46.7
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 2.7e-18 95.5 108 45.4
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 2.7e-18 95.5 109 42.2
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 4.6e-18 94.7 111 39.6
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 1.0e-17 93.6 85 55.3
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 1.0e-17 93.6 105 44.8
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 1.0e-17 93.6 105 43.8
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 6.7e-17 90.9 107 43.0
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 8.7e-17 90.5 105 40.0
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 1.1e-16 90.1 118 48.3
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 1.9e-16 89.4 111 44.1
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 2.5e-16 89.0 108 42.6
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 2.5e-16 89.0 63 60.3
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 4.3e-16 88.2 107 41.1
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 4.3e-16 88.2 107 41.1
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 5.7e-16 87.8 103 44.7
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 5.7e-16 87.8 111 43.2
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.3e-15 86.7 60 61.7
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.3e-15 86.7 60 61.7
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 1.6e-15 86.3 52 69.2
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 1.6e-15 86.3 75 54.7
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 1.6e-15 86.3 107 40.2
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.2e-15 85.9 49 67.3
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 2.8e-15 85.5 103 43.7
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 2.8e-15 85.5 75 54.7
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 2.8e-15 85.5 57 64.9
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 3.7e-15 85.1 56 58.9
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 4.8e-15 84.7 77 48.1
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 6.3e-15 84.3 45 75.6
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 8.2e-15 84.0 68 52.9
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 2.4e-14 82.4 44 70.5
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 3.1e-14 82.0 67 55.2
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 3.1e-14 82.0 107 42.1
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 4.1e-14 81.6 48 66.7
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 4.1e-14 81.6 104 41.3
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 4.1e-14 81.6 50 64.0
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 5.3e-14 81.3 105 41.9
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 5.3e-14 81.3 71 49.3
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 5.3e-14 81.3 104 43.3
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 6.9e-14 80.9 70 55.7
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 6.9e-14 80.9 106 43.4
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 6.9e-14 80.9 86 45.3
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 9.0e-14 80.5 47 63.8
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 9.0e-14 80.5 55 60.0
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 1.2e-13 80.1 50 60.0
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.5e-13 79.7 114 43.0
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 2.6e-13 79.0 50 64.0
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 2.6e-13 79.0 102 43.1
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 2.6e-13 79.0 70 50.0
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 3.4e-13 78.6 106 43.4
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 3.4e-13 78.6 106 41.5
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 5.9e-13 77.8 47 63.8
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 5.9e-13 77.8 47 61.7
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 5.9e-13 77.8 61 55.7
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 7.6e-13 77.4 50 60.0
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 1.0e-12 77.0 120 42.5
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 1.0e-12 77.0 108 37.0
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 1.3e-12 76.6 48 66.7
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 1.3e-12 76.6 49 67.3
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.3e-12 76.6 101 42.6
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.3e-12 76.6 49 67.3
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 1.7e-12 76.3 92 42.4
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 1.7e-12 76.3 59 57.6
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.2e-12 75.9 49 65.3
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 2.9e-12 75.5 85 42.4
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 2.9e-12 75.5 48 68.8
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 2.9e-12 75.5 50 56.0
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 3.8e-12 75.1 106 38.7
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 3.8e-12 75.1 47 66.0
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 6.5e-12 74.3 107 37.4
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 1.1e-11 73.6 101 39.6
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 1.1e-11 73.6 50 62.0
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 1.1e-11 73.6 49 65.3
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 1.1e-11 73.6 52 57.7
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 1.9e-11 72.8 44 63.6
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 2.5e-11 72.4 49 59.2
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 3.2e-11 72.0 106 37.7
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 3.2e-11 72.0 47 61.7
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 4.2e-11 71.6 100 41.0
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 7.2e-11 70.9 57 54.4
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 9.4e-11 70.5 54 55.6
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 1.2e-10 70.1 101 37.6
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 2.7e-10 68.9 42 69.0
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 3.6e-10 68.6 46 60.9
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 1.0e-09 67.0 66 45.5
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 1.4e-09 66.6 50 54.0
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 1.4e-09 66.6 64 45.3
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 1.4e-09 66.6 42 66.7
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 3.0e-09 65.5 58 51.7
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 3.9e-09 65.1 39 66.7
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 5.1e-09 64.7 37 70.3
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 1.5e-08 63.2 64 50.0
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 3.3e-08 62.0 77 42.9
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 4.3e-08 61.6 46 54.3
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 9.7e-08 60.5 78 42.3
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 9.7e-08 60.5 37 64.9
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 2.2e-07 59.3 36 61.1
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 2.8e-07 58.9 41 53.7
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 6.3e-07 57.8 55 47.3
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 1.4e-06 56.6 36 58.3
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 2.4e-06 55.8 85 37.6


User provided reference genes

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