Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25976 Brassica carinata HOM05D002458 ORTHO05D002603 1.7e-79 299.3 151 100.0
A05p30440 Brassica napus HOM05D002458 ORTHO05D002603 8.9e-73 276.9 151 93.4
BraA05t21883Z Brassica rapa HOM05D002458 ORTHO05D002603 2.6e-72 275.4 151 92.7
BolC5t33331H Brassica oleracea HOM05D002458 ORTHO05D002603 6.4e-71 270.8 151 91.4
C05p46040 Brassica napus HOM05D002458 ORTHO05D002603 1.9e-70 269.2 151 91.4
Sp3g17270 Schrenkiella parvula HOM05D002458 ORTHO05D002603 6.0e-61 237.7 155 85.2
Thhalv10022052m.g Eutrema salsugineum HOM05D002458 ORTHO05D002603 2.5e-59 232.3 154 84.4
AT3G19200 Arabidopsis thaliana HOM05D002458 ORTHO05D002603 5.3e-57 224.6 152 80.3
CARHR094610 Cardamine hirsuta HOM05D002458 ORTHO05D002603 1.7e-55 219.5 152 80.3
AL3G32580 Arabidopsis lyrata HOM05D002458 ORTHO05D002603 6.0e-53 211.1 152 77.6
Carub.0003s1903 Capsella rubella HOM05D002458 ORTHO05D002603 1.3e-52 209.9 156 76.3
BolC1t00421H Brassica oleracea HOM05D001453 ORTHO05D002020 8.2e-18 94.4 132 45.5
A01p04010 Brassica napus HOM05D001453 ORTHO05D002020 1.4e-17 93.6 132 44.7
BraA01t00390Z Brassica rapa HOM05D001453 ORTHO05D001444 1.4e-17 93.6 132 44.7
THA.LOC104819584 Tarenaya hassleriana HOM05D002458 ORTHO05D002603 1.8e-17 93.2 126 46.0
C01p04330 Brassica napus HOM05D001453 ORTHO05D002020 3.1e-17 92.4 132 44.7
AL7G16820 Arabidopsis lyrata HOM05D002458 ORTHO05D002603 1.2e-16 90.5 126 46.0
AT4G34419 Arabidopsis thaliana HOM05D002458 ORTHO05D002603 2.0e-16 89.7 134 43.3
CARHR242340 Cardamine hirsuta HOM05D002458 ORTHO05D002603 2.0e-16 89.7 124 46.8
Sp7g32210 Schrenkiella parvula HOM05D002458 ORTHO05D002603 2.0e-16 89.7 134 42.5
Carub.0007s0589 Capsella rubella HOM05D002458 ORTHO05D002603 2.6e-16 89.4 127 46.5
CiPaw.05G051800 Carya illinoinensis HOM05D002458 ORTHO05D002603 6.5e-15 84.7 155 40.6
Haze_01829 Corylus avellana HOM05D002458 ORTHO05D002603 6.5e-15 84.7 129 46.5
Thhalv10027139m.g Eutrema salsugineum HOM05D002458 ORTHO05D002603 8.5e-15 84.3 129 43.4
MD05G1079600 Malus domestica HOM05D002458 ORTHO05D002603 2.5e-14 82.8 128 44.5
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 2.5e-14 82.8 136 44.9
Gohir.A03G189800 Gossypium hirsutum HOM05D002458 ORTHO05D002603 5.5e-14 81.6 131 46.6
Gohir.D02G210400 Gossypium hirsutum HOM05D002458 ORTHO05D002603 5.5e-14 81.6 131 46.6
Gorai.005G238400 Gossypium raimondii HOM05D002458 ORTHO05D002603 5.5e-14 81.6 131 46.6
Atru.chr5.2728 Acer truncatum HOM05D002458 ORTHO05D002603 1.2e-13 80.5 128 48.4
BolC3t20870H Brassica oleracea HOM05D002458 ORTHO05D002603 1.2e-13 80.5 134 40.3
Cfa005475 Carpinus fangiana HOM05D002458 ORTHO05D002603 1.2e-13 80.5 129 44.2
BraA08t33650Z Brassica rapa HOM05D002458 ORTHO05D002603 1.6e-13 80.1 134 39.6
BcaC01g00905 Brassica carinata HOM05D002458 ORTHO05D002603 3.6e-13 79.0 134 39.6
A08p16860 Brassica napus HOM05D002458 ORTHO05D002603 3.6e-13 79.0 123 42.3
C03p85790 Brassica napus HOM05D002458 ORTHO05D002603 3.6e-13 79.0 134 39.6
Lalb_Chr16g0384661 Lupinus albus HOM05D002458 ORTHO05D002603 3.6e-13 79.0 117 44.4
Sabra04G0093500 Salix brachista HOM05D002458 ORTHO05D002603 3.6e-13 79.0 134 40.3
MD10G1093900 Malus domestica HOM05D002458 ORTHO05D002603 4.7e-13 78.6 128 42.2
Prupe.8G123500 Prunus persica HOM05D002458 ORTHO05D002603 4.7e-13 78.6 125 44.8
Actinidia00445 Actinidia chinensis HOM05D002458 ORTHO05D002603 6.1e-13 78.2 121 43.0
Potri.004G141600 Populus trichocarpa HOM05D002458 ORTHO05D002603 6.1e-13 78.2 134 41.8
Sopen02g015150 Solanum pennellii HOM05D002458 ORTHO05D002603 6.1e-13 78.2 120 47.5
Thecc.02G099600 Theobroma cacao HOM05D002458 ORTHO05D002603 6.1e-13 78.2 137 44.5
Potri.009G102800 Populus trichocarpa HOM05D002458 ORTHO05D002603 8.0e-13 77.8 119 45.4
QL11p036042 Quercus lobata HOM05D002458 ORTHO05D002603 8.0e-13 77.8 126 42.9
TPR.G30834 Trifolium pratense HOM05D002458 ORTHO05D002603 8.0e-13 77.8 119 44.5
HanXRQChr16g0515091 Helianthus annuus HOM05D002458 ORTHO05D002603 1.4e-12 77.0 118 45.8
unitig_61.g26001 Utricularia gibba HOM05D002458 ORTHO05D002603 1.4e-12 77.0 133 40.6
Solyc02g065020.2 Solanum lycopersicum HOM05D002458 ORTHO05D002603 2.3e-12 76.3 119 47.9
Glyma.02G133300 Glycine max HOM05D002458 ORTHO05D002603 3.0e-12 75.9 124 42.7
Haze_15416 Corylus avellana HOM05D002458 ORTHO05D002603 4.0e-12 75.5 113 46.0
FvH4_2g06210 Fragaria vesca HOM05D002458 ORTHO05D002603 4.0e-12 75.5 122 43.4
FAN24G3116 Fragaria x ananassa HOM05D002458 ORTHO05D002603 4.0e-12 75.5 122 43.4
TWI79G1260 Tripterygium wilfordii HOM05D002458 ORTHO05D002603 4.0e-12 75.5 119 43.7
Glyma.07G211700 Glycine max HOM05D002458 ORTHO05D002603 5.2e-12 75.1 123 42.3
RcHm_v2.0_Chr6g0256981 Rosa chinensis HOM05D002458 ORTHO05D002603 5.2e-12 75.1 123 42.3
MSTRG.20151 Avicennia marina HOM05D002458 ORTHO05D002603 6.7e-12 74.7 141 40.4
Ca_18677_v3 Cicer arietinum L. HOM05D002458 ORTHO05D002603 6.7e-12 74.7 120 43.3
Psat7g124200 Pisum sativum HOM05D002458 ORTHO05D002603 6.7e-12 74.7 121 44.6
Duzib248G1687 Durio zibethinus HOM05D002458 ORTHO05D002603 8.8e-12 74.3 141 41.1
FAN26G2469 Fragaria x ananassa HOM05D002458 ORTHO05D002603 8.8e-12 74.3 119 45.4
Lsat_1_v5_gn_7_87020 Lactuca sativa HOM05D002458 ORTHO05D002603 8.8e-12 74.3 129 39.5
Medtr4g086340 Medicago truncatula HOM05D002458 ORTHO05D002603 8.8e-12 74.3 105 45.7
FAN20G0269 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.2e-11 73.9 122 41.0
Psat4g087040 Pisum sativum HOM05D002458 ORTHO05D002603 1.2e-11 73.9 123 42.3
CSS0027699 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 1.5e-11 73.6 120 45.0
Ciclev10026611m.g Citrus clementina HOM05D002458 ORTHO05D002603 1.5e-11 73.6 121 42.1
FAN19G0517 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.5e-11 73.6 119 45.4
FAN23G1767 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.5e-11 73.6 119 45.4
FAN27G1641 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.5e-11 73.6 122 41.0
FAN28G2673 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.5e-11 73.6 119 45.4
Nitab4.5_0007480g0020 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.5e-11 73.6 131 41.2
Ciclev10029915m.g Citrus clementina HOM05D002458 ORTHO05D002603 2.0e-11 73.2 126 38.1
FAN11G1855 Fragaria x ananassa HOM05D002458 ORTHO05D002603 2.0e-11 73.2 119 44.5
FAN15G1604 Fragaria x ananassa HOM05D002458 ORTHO05D002603 2.0e-11 73.2 122 41.0
FAN16G2042 Fragaria x ananassa HOM05D002458 ORTHO05D002603 2.0e-11 73.2 119 44.5
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 2.0e-11 73.2 134 44.8
Sabra09G0078700 Salix brachista HOM05D002458 ORTHO05D002603 2.0e-11 73.2 142 38.7
MSTRG.23756 Avicennia marina HOM05D002458 ORTHO05D002603 3.3e-11 72.4 118 44.9
CAN.G836.76 Capsicum annuum HOM05D002458 ORTHO05D002603 3.3e-11 72.4 137 40.9
Migut.B00340 Erythranthe guttata HOM05D002458 ORTHO05D002603 3.3e-11 72.4 135 42.2
GSVIVG01022142001 Vitis vinifera HOM05D002458 ORTHO05D002603 3.3e-11 72.4 111 46.8
FvH4_1g15910 Fragaria vesca HOM05D002458 ORTHO05D002603 4.4e-11 72.0 119 44.5
FAN04G0719 Fragaria x ananassa HOM05D002458 ORTHO05D002603 4.4e-11 72.0 125 43.2
FAN12G1655 Fragaria x ananassa HOM05D002458 ORTHO05D002603 4.4e-11 72.0 125 43.2
Nitab4.5_0002543g0060 Nicotiana tabacum HOM05D002458 ORTHO05D002603 4.4e-11 72.0 131 41.2
Peaxi162Scf00003g02325 Petunia axillaris HOM05D002458 ORTHO05D002603 4.4e-11 72.0 126 45.2
PGSC0003DMG400025476 Solanum tuberosum HOM05D002458 ORTHO05D002603 4.4e-11 72.0 128 44.5
Gorai.008G074900 Gossypium raimondii HOM05D002458 ORTHO05D002603 5.7e-11 71.6 154 37.0
CAN.G165.22 Capsicum annuum HOM05D002458 ORTHO05D002603 7.5e-11 71.2 122 45.9
CiPaw.06G143400 Carya illinoinensis HOM05D002458 ORTHO05D002603 7.5e-11 71.2 127 40.9
Duzib052G0113 Durio zibethinus HOM05D002458 ORTHO05D002603 7.5e-11 71.2 130 40.0
Phvul.003G293000 Phaseolus vulgaris HOM05D002458 ORTHO05D002603 7.5e-11 71.2 119 42.0
RcHm_v2.0_Chr2g0105301 Rosa chinensis HOM05D002458 ORTHO05D002603 7.5e-11 71.2 125 44.0
COL.COLO4_32666 Corchorus olitorius HOM05D002458 ORTHO05D002603 9.7e-11 70.9 126 43.7
Sed0018653 Sechium edule HOM05D002458 ORTHO05D002603 1.3e-10 70.5 125 43.2
Solyc01g108170.3 Solanum lycopersicum HOM05D002458 ORTHO05D002603 1.3e-10 70.5 119 43.7
Oeu004830.1 Olea europaea HOM05D002458 ORTHO05D002603 1.7e-10 70.1 147 39.5
SalBow3G3738 Salvia bowleyana HOM05D002458 ORTHO05D002603 1.7e-10 70.1 129 40.3
Gohir.D12G068500 Gossypium hirsutum HOM05D002458 ORTHO05D002603 2.2e-10 69.7 139 39.6
HanXRQChr07g0191581 Helianthus annuus HOM05D002458 ORTHO05D002603 2.2e-10 69.7 115 45.2
Manes.13G127400 Manihot esculenta HOM05D002458 ORTHO05D002603 2.8e-10 69.3 123 43.9
Peaxi162Scf00016g01824 Petunia axillaris HOM05D002458 ORTHO05D002603 2.8e-10 69.3 84 51.2
CANSAT01G1685 Cannabis sativa HOM05D002458 ORTHO05D002603 4.8e-10 68.6 134 41.0
COL.COLO4_11399 Corchorus olitorius HOM05D002458 ORTHO05D002603 4.8e-10 68.6 108 44.4
Sopen01g050400 Solanum pennellii HOM05D002458 ORTHO05D002603 4.8e-10 68.6 119 42.9
PGSC0003DMG400025891 Solanum tuberosum HOM05D002458 ORTHO05D002603 4.8e-10 68.6 122 43.4
Cc02_g18710 Coffea canephora HOM05D002458 ORTHO05D002603 1.1e-09 67.4 117 42.7
Dinv23616 Davidia involucrata HOM05D002458 ORTHO05D002603 1.1e-09 67.4 129 39.5
CSS0037574 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 1.4e-09 67.0 112 43.8
Nitab4.5_0023509g0010 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.4e-09 67.0 84 50.0
PGR142G0732 Punica granatum HOM05D002458 ORTHO05D002603 1.4e-09 67.0 104 43.3
Thecc.01G054400 Theobroma cacao HOM05D002458 ORTHO05D002603 1.4e-09 67.0 116 42.2
Gohir.A12G070600 Gossypium hirsutum HOM05D002458 ORTHO05D002603 1.8e-09 66.6 154 35.1
Peaxi162Scf00450g00733 Petunia axillaris HOM05D002458 ORTHO05D002603 1.8e-09 66.6 137 40.1
TWI09G0929 Tripterygium wilfordii HOM05D002458 ORTHO05D002603 1.8e-09 66.6 141 36.9
CSS0050202 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 2.4e-09 66.2 136 39.0
HanXRQChr10g0288991 Helianthus annuus HOM05D002458 ORTHO05D002603 2.4e-09 66.2 135 39.3
Sabra07G0037800 Salix brachista HOM05D002458 ORTHO05D002603 2.4e-09 66.2 131 42.0
Ah.02g124270 Amaranthus hybridus HOM05D002458 ORTHO05D002603 3.1e-09 65.9 125 39.2
Duzib147G0558 Durio zibethinus HOM05D002458 ORTHO05D002603 3.1e-09 65.9 116 38.8
Oeu013702.1 Olea europaea HOM05D002458 ORTHO05D002603 3.1e-09 65.9 132 42.4
Sc18g0004030 Simmondsia chinensis HOM05D002458 ORTHO05D002603 3.1e-09 65.9 77 46.8
Duzib187G0864 Durio zibethinus HOM05D002458 ORTHO05D002603 4.1e-09 65.5 116 40.5
Nitab4.5_0003503g0060 Nicotiana tabacum HOM05D002458 ORTHO05D002603 4.1e-09 65.5 102 47.1
Actinidia16500 Actinidia chinensis HOM05D002458 ORTHO05D002603 7.0e-09 64.7 112 42.0
CSS0005083 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 7.0e-09 64.7 144 36.8
SalBow1G7029 Salvia bowleyana HOM05D002458 ORTHO05D002603 7.0e-09 64.7 133 39.8
Cc07_g05940 Coffea canephora HOM05D002458 ORTHO05D002603 9.1e-09 64.3 141 37.6
CsaV3_3G018550 Cucumis sativus L. HOM05D002458 ORTHO05D002603 9.1e-09 64.3 127 40.9
Migut.N01190 Erythranthe guttata HOM05D002458 ORTHO05D002603 9.1e-09 64.3 132 39.4
Hma1.2p1_0370F.1_g137860 Hydrangea macrophylla HOM05D002458 ORTHO05D002603 9.1e-09 64.3 115 40.9
ECA234G2959 Erigeron canadensis HOM05D002458 ORTHO05D002603 1.2e-08 63.9 84 48.8
Eucgr.H02010 Eucalyptus grandis HOM05D002458 ORTHO05D002603 1.2e-08 63.9 116 44.0
Lj4g0009220 Lotus japonicus HOM05D002458 ORTHO05D002603 1.2e-08 63.9 125 41.6
Lalb_Chr09g0323131 Lupinus albus HOM05D002458 ORTHO05D002603 1.2e-08 63.9 129 42.6
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 1.6e-08 63.5 109 44.0
TWI75G1467 Tripterygium wilfordii HOM05D002458 ORTHO05D002603 2.0e-08 63.2 83 45.8
arahy.Tifrunner.gnm1.ann1.Z85DSV Arachis hypogaea HOM05D002458 ORTHO05D002603 2.7e-08 62.8 138 40.6
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 2.7e-08 62.8 137 38.0
MELO3C019512.2 Cucumis melo HOM05D002458 ORTHO05D002603 2.7e-08 62.8 127 40.2
Dinv42151 Davidia involucrata HOM05D002458 ORTHO05D002603 2.7e-08 62.8 120 40.0
Eucgr.H01652 Eucalyptus grandis HOM05D002458 ORTHO05D002603 2.7e-08 62.8 116 44.0
MBI06_g24647_MAGBIO Magnolia biondii HOM05D002458 ORTHO05D002603 2.7e-08 62.8 122 44.3
EL10Ac6g15758 Beta vulgaris HOM05D002458 ORTHO05D002603 3.5e-08 62.4 117 43.6
Dinv29979 Davidia involucrata HOM05D002458 ORTHO05D002603 3.5e-08 62.4 126 39.7
Manes.10G065400 Manihot esculenta HOM05D002458 ORTHO05D002603 4.5e-08 62.0 134 36.6
Sed0017415 Sechium edule HOM05D002458 ORTHO05D002603 4.5e-08 62.0 110 44.5
CANSAT25G1360 Cannabis sativa HOM05D002458 ORTHO05D002603 7.7e-08 61.2 69 49.3
HanXRQChr04g0128221 Helianthus annuus HOM05D002458 ORTHO05D002603 7.7e-08 61.2 153 33.3
Hma1.2p1_0461F.1_g157900 Hydrangea macrophylla HOM05D002458 ORTHO05D002603 7.7e-08 61.2 130 40.0
CsaV3_2G016870 Cucumis sativus L. HOM05D002458 ORTHO05D002603 1.0e-07 60.8 123 39.0
Duzib264G0584 Durio zibethinus HOM05D002458 ORTHO05D002603 1.0e-07 60.8 136 36.0
TAR376G0738 Trochodendron aralioides HOM05D002458 ORTHO05D002603 1.0e-07 60.8 137 35.8
TAR381G1245 Trochodendron aralioides HOM05D002458 ORTHO05D002603 1.0e-07 60.8 98 40.8
Ca_19502_v3 Cicer arietinum L. HOM05D002458 ORTHO05D002603 1.7e-07 60.1 72 47.2
Nitab4.5_0000310g0020 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.7e-07 60.1 152 32.2
SalBow6G2746 Salvia bowleyana HOM05D002458 ORTHO05D002603 1.7e-07 60.1 122 38.5
arahy.Tifrunner.gnm1.ann1.4FX07B Arachis hypogaea HOM05D002458 ORTHO05D002603 2.2e-07 59.7 81 48.1
Gorai.007G212200 Gossypium raimondii HOM05D002458 ORTHO05D002603 2.9e-07 59.3 139 35.3
Phvul.003G244300 Phaseolus vulgaris HOM05D002458 ORTHO05D002603 3.8e-07 58.9 133 39.8
Prupe.7G134700 Prunus persica HOM05D002458 ORTHO05D002603 3.8e-07 58.9 64 53.1
PSO170G0732 Papaver somniferum HOM05D002458 ORTHO05D002603 5.0e-07 58.5 147 36.1
Lalb_Chr05g0226601 Lupinus albus HOM05D002458 ORTHO05D002603 6.5e-07 58.2 115 40.9
PGR042G0791 Punica granatum HOM05D002458 ORTHO05D002603 6.5e-07 58.2 115 39.1
Gohir.A11G191400 Gossypium hirsutum HOM05D002458 ORTHO05D002603 8.5e-07 57.8 139 34.5
VMungo0251G2437 Vigna mungo HOM05D002458 ORTHO05D002603 1.5e-06 57.0 119 40.3
arahy.Tifrunner.gnm1.ann1.U0D0WT Arachis hypogaea HOM05D002458 ORTHO05D002603 1.9e-06 56.6 81 45.7
Nitab4.5_0001034g0120 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.9e-06 56.6 138 34.1
Hma1.2p1_0200F.1_g085920 Hydrangea macrophylla HOM05D002458 ORTHO05D002603 2.5e-06 56.2 114 42.1
ClCG02G012800 Citrullus lanatus HOM05D002458 ORTHO05D002603 3.2e-06 55.8 127 37.8
ClCG05G010020 Citrullus lanatus HOM05D002458 ORTHO05D002603 3.2e-06 55.8 68 52.9
HanXRQChr16g0497601 Helianthus annuus HOM05D002458 ORTHO05D002603 3.2e-06 55.8 125 36.0
TPR.G21290 Trifolium pratense HOM05D002458 ORTHO05D002603 4.2e-06 55.5 108 40.7
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 4.2e-06 55.5 137 38.0
Lsat_1_v5_gn_5_112820 Lactuca sativa HOM05D002458 ORTHO05D002603 5.5e-06 55.1 127 33.9
SGA_v2.0_scaffold13G06588 Striga asiatica HOM05D002458 ORTHO05D002603 5.5e-06 55.1 107 38.3
unitig_899.g14964 Utricularia gibba HOM05D002458 ORTHO05D002603 5.5e-06 55.1 114 38.6
AUR62001940 Chenopodium quinoa HOM05D002458 ORTHO05D002603 7.2e-06 54.7 110 43.6
Migut.H00441 Erythranthe guttata HOM05D002458 ORTHO05D002603 7.2e-06 54.7 79 43.0
PSO675G2615 Papaver somniferum HOM05D002458 ORTHO05D002603 7.2e-06 54.7 142 37.3
THA.LOC104819222 Tarenaya hassleriana HOM05D002458 ORTHO05D002603 7.2e-06 54.7 85 43.5
CDE03G0428 Ceratophyllum demersum HOM05D002458 ORTHO05D002603 9.4e-06 54.3 126 39.7
DCAR_010901 Daucus carota HOM05D001349 ORTHO05D008727 9.4e-06 54.3 122 41.0


User provided reference genes

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