Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25914 Brassica carinata HOM05D005588 ORTHO05D006615 5.2e-177 624.4 341 100.0
BcaC05g28591 Brassica carinata HOM05D005588 ORTHO05D006615 6.8e-161 570.9 343 92.7
C05p46980 Brassica napus HOM05D005588 ORTHO05D006615 6.8e-161 570.9 343 92.7
BolC5t33427H Brassica oleracea HOM05D005588 ORTHO05D006615 6.8e-161 570.9 343 92.7
A05p30990 Brassica napus HOM05D005588 ORTHO05D006615 4.9e-159 564.7 343 91.5
BraA05t21941Z Brassica rapa HOM05D005588 ORTHO05D006615 1.6e-157 559.7 343 91.3
Sp3g16690 Schrenkiella parvula HOM05D005588 ORTHO05D006615 9.5e-155 550.4 344 84.6
C03p49620 Brassica napus HOM05D005588 ORTHO05D006615 3.4e-152 542.0 344 83.1
BcaB04g18995 Brassica carinata HOM05D005588 ORTHO05D006615 4.4e-152 541.6 344 82.3
BcaC01g03687 Brassica carinata HOM05D005588 ORTHO05D006615 4.4e-152 541.6 344 83.1
AT3G18620 Arabidopsis thaliana HOM05D005588 ORTHO05D006615 4.9e-151 538.1 347 81.3
AL3G31930 Arabidopsis lyrata HOM05D005588 ORTHO05D006615 1.1e-150 537.0 347 81.0
Carub.0003s1840 Capsella rubella HOM05D005588 ORTHO05D006615 1.1e-150 537.0 347 81.0
BolC3t17260H Brassica oleracea HOM05D005588 ORTHO05D006615 7.0e-150 534.3 339 83.2
BraA03t13232Z Brassica rapa HOM05D005588 ORTHO05D006615 1.7e-148 529.6 338 82.8
A03p40750 Brassica napus HOM05D005588 ORTHO05D006615 5.0e-148 528.1 338 82.5
CARHR094000 Cardamine hirsuta HOM05D005588 ORTHO05D006615 6.2e-146 521.2 344 79.7
Aa31LG8G5470 Aethionema arabicum HOM05D005588 ORTHO05D006615 1.3e-140 503.4 344 77.0
THA.LOC104820416 Tarenaya hassleriana HOM05D005588 ORTHO05D006615 7.1e-118 427.9 339 68.4
Thhalv10021331m.g Eutrema salsugineum HOM05D005588 ORTHO05D006615 1.5e-112 410.2 268 82.5
Thecc.02G311800 Theobroma cacao HOM05D005588 ORTHO05D006615 9.9e-104 380.9 340 59.1
Duzib248G1275 Durio zibethinus HOM05D005588 ORTHO05D006615 1.7e-103 380.2 340 58.8
Duzib251G0713 Durio zibethinus HOM05D005588 ORTHO05D006615 3.9e-100 369.0 346 57.8
GSVIVG01010179001 Vitis vinifera HOM05D005588 ORTHO05D006615 6.9e-97 358.2 336 58.0
Actinidia24397 Actinidia chinensis HOM05D005588 ORTHO05D006615 7.6e-96 354.8 336 57.7
Gorai.013G027800 Gossypium raimondii HOM05D005588 ORTHO05D006615 1.4e-94 350.5 339 56.3
Actinidia11175 Actinidia chinensis HOM05D005588 ORTHO05D006615 7.1e-94 348.2 336 56.8
CSS0004178 Camellia sinensis var. sinensis HOM05D005588 ORTHO05D006615 7.1e-94 348.2 337 55.8
Dinv17600 Davidia involucrata HOM05D005588 ORTHO05D006615 2.1e-93 346.7 336 55.7
Gohir.A13G026000 Gossypium hirsutum HOM05D005588 ORTHO05D006615 2.7e-93 346.3 339 55.8
Ciclev10032024m.g Citrus clementina HOM05D005588 ORTHO05D006615 1.0e-92 344.4 339 55.5
VMungo0251G1670 Vigna mungo HOM05D005588 ORTHO05D006615 1.0e-92 344.4 336 52.4
Glyma.20G004400 Glycine max HOM05D005588 ORTHO05D006615 5.1e-92 342.0 336 53.3
TAR629G1265 Trochodendron aralioides HOM05D005588 ORTHO05D006615 5.1e-92 342.0 338 55.0
TWI53G2090 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 6.7e-92 341.7 340 55.0
Glyma.09G281400 Glycine max HOM05D005588 ORTHO05D006615 1.1e-91 340.9 336 52.7
Rhsim06G0125900 Rhododendron simsii HOM05D005588 ORTHO05D006615 1.9e-91 340.1 331 55.6
Manes.11G109700 Manihot esculenta HOM05D005588 ORTHO05D006615 7.4e-91 338.2 322 55.6
Phvul.003G006600 Phaseolus vulgaris HOM05D005588 ORTHO05D006615 7.4e-91 338.2 337 51.0
Nitab4.5_0002392g0080 Nicotiana tabacum HOM05D005588 ORTHO05D006615 2.8e-90 336.3 343 55.7
CsaV3_3G031490 Cucumis sativus L. HOM05D005588 ORTHO05D006615 6.3e-90 335.1 341 55.1
MELO3C024032.2 Cucumis melo HOM05D005588 ORTHO05D006615 5.3e-89 332.0 341 56.6
RcHm_v2.0_Chr4g0446471 Rosa chinensis HOM05D005588 ORTHO05D006615 6.9e-89 331.6 321 51.7
Eucgr.G02567 Eucalyptus grandis HOM05D005588 ORTHO05D006615 9.0e-89 331.3 329 53.5
Prupe.1G345600 Prunus persica HOM05D005588 ORTHO05D006615 3.4e-88 329.3 353 51.6
Atru.chr11.1235 Acer truncatum HOM05D005588 ORTHO05D006615 2.9e-87 326.2 338 53.3
MD16G1000700 Malus domestica HOM05D005588 ORTHO05D006615 2.9e-87 326.2 330 57.3
arahy.Tifrunner.gnm1.ann1.HXF7IN Arachis hypogaea HOM05D005588 ORTHO05D006615 5.0e-87 325.5 331 50.5
AUR62017670 Chenopodium quinoa HOM05D005588 ORTHO05D006615 1.1e-86 324.3 327 53.2
FvH4_4g36750 Fragaria vesca HOM05D005588 ORTHO05D006615 1.1e-86 324.3 321 57.9
FAN07G0754 Fragaria x ananassa HOM05D005588 ORTHO05D006615 3.2e-86 322.8 322 57.8
FAN17G1536 Fragaria x ananassa HOM05D005588 ORTHO05D006615 3.2e-86 322.8 321 57.6
MSTRG.11941 Avicennia marina HOM05D005588 ORTHO05D006615 4.2e-86 322.4 330 54.5
Potri.007G070600 Populus trichocarpa HOM05D005588 ORTHO05D006615 7.2e-86 321.6 333 51.7
Medtr1g036390 Medicago truncatula HOM05D005588 ORTHO05D006615 1.6e-85 320.5 331 53.2
Nitab4.5_0000139g0120 Nicotiana tabacum HOM05D005588 ORTHO05D006615 2.7e-85 319.7 336 52.1
Psat6g098600 Pisum sativum HOM05D005588 ORTHO05D006615 3.6e-85 319.3 328 53.0
PGR142G3609 Punica granatum HOM05D005588 ORTHO05D006615 3.6e-85 319.3 329 54.7
Medtr4g074600 Medicago truncatula HOM05D005588 ORTHO05D006615 7.9e-85 318.2 328 54.0
Sopen04g004500 Solanum pennellii HOM05D005588 ORTHO05D006615 7.9e-85 318.2 332 51.8
PSO063G5510 Papaver somniferum HOM05D005588 ORTHO05D006615 1.0e-84 317.8 331 52.0
TPR.G32342 Trifolium pratense HOM05D005588 ORTHO05D006615 2.3e-84 316.6 338 52.7
CANSAT64G0248 Cannabis sativa HOM05D005588 ORTHO05D006615 3.9e-84 315.8 340 53.2
Aqoxy3G04274 Aquilegia oxysepala HOM05D005588 ORTHO05D006615 1.5e-83 313.9 323 53.6
PSO782G2071 Papaver somniferum HOM05D005588 ORTHO05D006615 1.5e-83 313.9 331 51.7
PGSC0003DMG400032559 Solanum tuberosum HOM05D005588 ORTHO05D006615 1.5e-83 313.9 335 51.6
TAR371G0486 Trochodendron aralioides HOM05D005588 ORTHO05D006615 4.3e-83 312.4 347 50.1
Solyc04g009380.3 Solanum lycopersicum HOM05D005588 ORTHO05D006615 9.7e-83 311.2 324 51.5
SGA_v2.0_scaffold173G39109 Striga asiatica HOM05D005588 ORTHO05D006615 9.7e-83 311.2 328 52.7
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 2.2e-82 310.1 333 49.2
Lalb_Chr04g0258921 Lupinus albus HOM05D005588 ORTHO05D006615 2.2e-82 310.1 324 50.0
MBI03_g24016_MAGBIO Magnolia biondii HOM05D005588 ORTHO05D006615 6.3e-82 308.5 313 55.3
Lalb_Chr17g0338031 Lupinus albus HOM05D005588 ORTHO05D006615 1.8e-81 307.0 331 53.5
Lj2g0013630 Lotus japonicus HOM05D005588 ORTHO05D006615 4.1e-81 305.8 310 52.3
HanXRQChr13g0388111 Helianthus annuus HOM05D005588 ORTHO05D006615 5.3e-81 305.4 337 50.1
ECA246G5122 Erigeron canadensis HOM05D005588 ORTHO05D006615 9.0e-81 304.7 333 51.1
Cc11_g00190 Coffea canephora HOM05D005588 ORTHO05D006615 1.0e-79 301.2 339 50.7
Nitab4.5_0002113g0130 Nicotiana tabacum HOM05D005588 ORTHO05D006615 1.0e-79 301.2 367 45.2
Migut.A00690 Erythranthe guttata HOM05D005588 ORTHO05D006615 6.5e-79 298.5 336 48.5
Sed0008330 Sechium edule HOM05D005588 ORTHO05D006615 2.5e-78 296.6 325 50.2
Lsat_1_v5_gn_3_33621 Lactuca sativa HOM05D005588 ORTHO05D006615 4.2e-78 295.8 336 46.1
Lj6C721G15 Lonicera japonica HOM05D005588 ORTHO05D006615 1.6e-77 293.9 332 50.3
TPR.G8237 Trifolium pratense HOM05D005588 ORTHO05D006615 1.6e-77 293.9 287 55.7
EL10Ac9g22925 Beta vulgaris HOM05D005588 ORTHO05D006615 2.1e-77 293.5 311 50.5
ECA233G4991 Erigeron canadensis HOM05D005588 ORTHO05D006615 2.7e-77 293.1 338 47.3
arahy.Tifrunner.gnm1.ann1.J0Y6Y5 Arachis hypogaea HOM05D005588 ORTHO05D006615 1.0e-76 291.2 336 47.0
Zm00001eb433550 Zea mays HOM05D005588 ORTHO05D006615 6.7e-76 288.5 328 47.9
HPP92_024425 Vanilla planifolia HOM05D005588 ORTHO05D006615 7.4e-75 285.0 338 46.4
HanXRQChr17g0540781 Helianthus annuus HOM05D005588 ORTHO05D006615 1.7e-74 283.9 332 48.2
Sc10g0006750 Simmondsia chinensis HOM05D005588 ORTHO05D006615 4.8e-74 282.3 333 49.2
Lsat_1_v5_gn_8_32400 Lactuca sativa HOM05D005588 ORTHO05D006615 6.3e-74 282.0 338 47.3
Zm00001eb066460 Zea mays HOM05D005588 ORTHO05D006615 7.7e-72 275.0 330 47.9
arahy.Tifrunner.gnm1.ann1.8S5M3J Arachis hypogaea HOM05D005588 ORTHO05D006615 1.3e-71 274.2 332 48.8
arahy.Tifrunner.gnm1.ann1.7Y84RT Arachis hypogaea HOM05D005588 ORTHO05D006615 2.9e-71 273.1 332 48.8
CiPaw.09G164500 Carya illinoinensis HOM05D005588 ORTHO05D006615 5.0e-71 272.3 263 52.9
SalBow1G0039 Salvia bowleyana HOM05D005588 ORTHO05D006615 2.7e-69 266.5 323 48.3
Peaxi162Scf00363g00733 Petunia axillaris HOM05D005588 ORTHO05D006615 1.0e-68 264.6 338 45.0
AUR62015207 Chenopodium quinoa HOM05D005588 ORTHO05D006615 1.5e-67 260.8 327 46.5
Hund00348 Selenicereus undatus HOM05D005588 ORTHO05D006615 9.1e-65 251.5 324 46.9
Psat7g173520 Pisum sativum HOM05D005588 ORTHO05D006615 1.3e-63 247.7 266 57.1
Gohir.D13G024600 Gossypium hirsutum HOM05D005588 ORTHO05D006615 2.2e-63 246.9 260 54.2
CAN.G624.25 Capsicum annuum HOM05D005588 ORTHO05D006615 8.5e-63 245.0 280 52.1
ClCG10G011870 Citrullus lanatus HOM05D005588 ORTHO05D006615 2.5e-62 243.4 390 41.5
Nitab4.5_0007261g0090 Nicotiana tabacum HOM05D005588 ORTHO05D006615 8.0e-61 238.4 333 42.3
Os04g0674450 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 8.8e-60 235.0 291 46.4
ATR0626G258 Amborella trichopoda HOM05D005588 ORTHO05D006615 2.0e-59 233.8 341 45.5
Gorai.009G328100 Gossypium raimondii HOM05D005588 ORTHO05D006615 1.4e-57 227.6 223 55.2
Sabra07G0059300 Salix brachista HOM05D005588 ORTHO05D006615 1.4e-57 227.6 260 52.7
Peaxi162Scf01172g00038 Petunia axillaris HOM05D005588 ORTHO05D006615 1.0e-52 211.5 333 40.2
Gohir.A05G307500 Gossypium hirsutum HOM05D005588 ORTHO05D006615 2.3e-52 210.3 265 47.2
QL03p043796 Quercus lobata HOM05D005588 ORTHO05D006615 3.0e-52 209.9 165 58.8
MD13G1007300 Malus domestica HOM05D005588 ORTHO05D006615 9.1e-49 198.4 165 55.8
CDE05G3190 Ceratophyllum demersum HOM05D005588 ORTHO05D006615 2.7e-48 196.8 196 52.6
TWI74G1417 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 2.7e-48 196.8 160 58.1
SalBow8G1527 Salvia bowleyana HOM05D005588 ORTHO05D006615 5.7e-43 179.1 328 37.5
Pp3c13_19220 Physcomitrium patens HOM05D005588 ORTHO05D006615 1.3e-42 177.9 329 34.3
Pp3c16_1360 Physcomitrium patens HOM05D005588 ORTHO05D006615 2.2e-42 177.2 312 34.9
Gohir.D05G307832 Gossypium hirsutum HOM05D005588 ORTHO05D006615 1.6e-40 171.0 165 51.5
Sed0002544 Sechium edule HOM05D005588 ORTHO05D006615 1.7e-39 167.5 147 52.4
Mapoly0055s0077 Marchantia polymorpha HOM05D005588 ORTHO05D006615 1.9e-38 164.1 307 34.9
SEGI_36505 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 3.3e-38 163.3 153 51.0
Haze_19909 Corylus avellana HOM05D005588 ORTHO05D006615 2.1e-37 160.6 298 37.6
SMO146G0139 Selaginella moellendorffii HOM05D005588 ORTHO05D006615 3.0e-36 156.8 306 37.3
vmacro12413 Vaccinium macrocarpon HOM05D005588 ORTHO05D006615 6.8e-36 155.6 155 53.5
Nn4g24927 Nelumbo nucifera HOM05D005588 ORTHO05D006615 2.3e-31 140.6 291 39.2
COL.COLO4_27672 Corchorus olitorius HOM05D005588 ORTHO05D006615 8.6e-31 138.7 148 46.6
AagrBONN_evm.TU.Sc2ySwM_228.4026 Anthoceros agrestis HOM05D005588 ORTHO05D006615 3.6e-29 133.3 157 42.7
MD13G1007400 Malus domestica HOM05D005588 ORTHO05D006615 1.4e-28 131.3 143 50.3
Ca_27076_v3 Cicer arietinum L. HOM05D005588 ORTHO05D006615 3.5e-24 116.7 83 62.7
DCAR_030400 Daucus carota HOM05D005588 ORTHO05D006615 3.5e-24 116.7 161 46.0
TWI74G1107 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 6.2e-21 105.9 105 55.2
FAN12G1938 Fragaria x ananassa HOM05D005588 ORTHO05D006615 9.9e-19 98.6 73 60.3
Os06g0308900 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 1.9e-17 94.4 76 60.5
Cpa.g.sc63.2 Carica papaya HOM05D007631 ORTHO05D009566 1.6e-16 91.3 87 73.6
CBR_g50402 Chara braunii HOM05D005588 ORTHO05D006615 1.0e-15 88.6 241 30.7
AagrBONN_evm.TU.Sc2ySwM_362.2362 Anthoceros agrestis HOM05D005588 ORTHO05D006615 1.2e-13 81.6 77 45.5
ATR0618G212 Amborella trichopoda HOM05D005588 ORTHO05D006615 3.3e-06 57.0 67 47.8
SEGI_31391 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 9.6e-06 55.5 90 37.8


User provided reference genes

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