Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1192.9 689 100.0
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 0.0e+00 1139.8 691 90.4
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1139.0 691 91.9
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1137.5 691 91.8
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 0.0e+00 1135.9 693 93.2
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1135.6 689 94.8
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1132.1 692 95.2
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1130.9 693 94.2
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1129.4 693 94.1
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1124.8 690 94.5
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 0.0e+00 1124.8 690 94.5
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 0.0e+00 1115.9 723 91.1
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 0.0e+00 1114.8 690 89.0
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 0.0e+00 1111.3 692 88.6
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 0.0e+00 1110.1 691 91.8
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 0.0e+00 1104.7 691 88.0
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 0.0e+00 1104.4 694 90.9
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 0.0e+00 1102.4 692 90.5
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 0.0e+00 1094.7 693 87.4
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 1.6e-302 1042.3 690 84.1
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 1.8e-282 975.7 689 80.3
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.4e-282 975.3 689 78.4
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 2.4e-282 975.3 689 79.0
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 3.1e-282 974.9 689 78.7
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.2e-281 973.0 686 81.5
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 2.7e-281 971.8 689 78.4
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 3.5e-281 971.5 689 78.5
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 4.5e-281 971.1 689 78.4
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 8.6e-280 966.8 689 76.5
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.9e-279 965.7 689 76.5
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 2.5e-279 965.3 693 78.6
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.2e-278 963.0 686 78.7
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 2.1e-278 962.2 689 77.4
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 4.0e-277 958.0 692 76.7
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 5.2e-277 957.6 689 77.4
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 8.9e-277 956.8 689 79.0
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 3.4e-276 954.9 683 78.3
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 4.1e-274 948.0 671 77.2
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 2.0e-273 945.7 688 78.3
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 2.0e-273 945.7 686 78.6
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 2.7e-273 945.3 689 76.3
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 1.0e-272 943.3 689 77.1
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 2.3e-272 942.2 689 77.5
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 3.0e-272 941.8 686 75.9
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 3.0e-272 941.8 686 77.1
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.0e-272 941.8 689 75.5
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 8.6e-272 940.3 689 77.1
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 3.3e-271 938.3 689 77.8
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 5.6e-271 937.6 686 76.8
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 5.6e-271 937.6 689 75.0
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.6e-270 936.0 687 76.4
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 2.1e-270 935.6 689 74.2
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 1.8e-269 932.6 656 77.1
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.8e-269 932.6 748 69.9
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.1e-269 931.8 686 78.0
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 4.0e-269 931.4 685 78.4
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 4.0e-269 931.4 748 69.9
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 6.8e-269 930.6 689 75.0
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 1.2e-268 929.9 686 75.1
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.5e-268 929.5 689 74.5
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 1.5e-268 929.5 667 77.2
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 3.4e-268 928.3 685 75.3
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 3.4e-268 928.3 689 75.6
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 4.9e-267 924.5 692 74.0
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 6.4e-267 924.1 690 72.6
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 3.2e-266 921.8 689 75.0
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 3.2e-266 921.8 674 74.5
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 3.2e-266 921.8 685 77.4
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 5.4e-266 921.0 691 72.9
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 1.2e-265 919.8 689 75.8
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 4.6e-265 917.9 669 74.0
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 6.0e-265 917.5 660 77.1
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 1.0e-264 916.8 733 71.4
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 1.3e-264 916.4 682 76.4
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 2.3e-264 915.6 652 76.4
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 6.6e-264 914.1 674 74.2
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 8.6e-264 913.7 671 77.6
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 7.3e-263 910.6 733 70.8
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 1.6e-262 909.4 684 74.9
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 5.2e-261 904.4 735 71.3
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 1.5e-260 902.9 691 73.1
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 6.4e-259 897.5 683 73.8
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 5.4e-258 894.4 669 73.7
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 5.4e-258 894.4 685 79.0
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 6.2e-254 880.9 656 75.8
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 7.1e-250 867.5 685 71.5
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 2.1e-249 865.9 689 72.0
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 2.7e-249 865.5 689 70.2
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 6.6e-248 860.9 685 69.9
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 1.1e-247 860.1 680 68.8
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 1.2e-246 856.7 641 76.0
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 1.8e-245 852.8 689 70.1
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.3e-243 846.7 674 71.5
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 9.3e-242 840.5 736 65.6
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 1.6e-241 839.7 680 69.7
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 5.1e-240 834.7 673 69.1
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 9.6e-239 830.5 680 69.1
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 4.0e-237 825.1 613 77.7
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 6.9e-237 824.3 675 68.9
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.3e-235 820.1 724 64.9
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 3.8e-235 818.5 675 68.4
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 5.4e-234 814.7 649 70.4
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 5.4e-234 814.7 620 73.9
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 9.3e-234 813.9 719 65.4
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 1.6e-233 813.1 1039 50.6
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 2.8e-230 802.4 578 76.5
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.4e-229 800.0 669 67.4
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.4e-227 790.8 694 65.0
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 8.4e-227 790.8 661 67.2
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 1.5e-223 780.0 653 67.7
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 3.3e-223 778.9 670 66.6
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 2.4e-221 772.7 672 65.8
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 3.8e-203 712.2 704 62.4
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 3.2e-202 709.1 667 60.6
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 1.6e-201 706.8 661 60.5
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 1.1e-199 700.7 555 73.2
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 2.7e-193 679.5 653 61.4
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.0e-192 677.6 671 57.8
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 1.7e-158 563.9 687 51.7
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 1.2e-153 547.7 426 75.8
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 4.6e-148 529.3 402 76.1
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.5e-130 470.3 364 70.1
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 5.1e-123 446.0 308 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 1.1e-120 438.3 577 49.7
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 1.3e-99 368.2 368 62.2
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 5.9e-79 299.7 508 43.5
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 7.2e-77 292.7 712 32.0
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 2.1e-76 291.2 277 61.7
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 2.7e-76 290.8 517 43.1
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 1.2e-47 195.7 129 76.0
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.3e-46 192.2 185 61.1
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.7e-46 191.8 565 32.4
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 1.6e-44 185.3 129 75.2
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 3.6e-44 184.1 155 67.1
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 5.0e-38 163.7 94 85.1
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 1.5e-37 162.2 779 28.5
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 1.6e-31 142.1 622 28.9
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 2.1e-28 131.7 91 78.0
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 3.6e-20 104.4 672 21.1
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 3.1e-19 101.3 71 76.1
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 7.1e-16 90.1 687 22.6
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 3.5e-15 87.8 105 61.9
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 6.9e-11 73.6 69 59.4
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 6.9e-11 73.6 76 52.6
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 2.9e-09 68.2 78 57.7
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 4.9e-09 67.4 61 59.0
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 1.9e-08 65.5 779 18.2
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 1.6e-07 62.4 78 56.4


User provided reference genes

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