Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25882 Brassica carinata HOM05D000736 ORTHO05D016041 8.6e-57 223.4 110 100.0
BcaB06g25883 Brassica carinata HOM05D000736 ORTHO05D016041 2.0e-29 132.5 90 76.7
BcaB07g34061 Brassica carinata HOM05D000736 ORTHO05D016041 1.4e-27 126.3 90 73.3
BcaB05g23169 Brassica carinata HOM05D001355 ORTHO05D016041 1.2e-26 123.2 90 72.2
BcaB08g36033 Brassica carinata HOM05D000736 ORTHO05D016041 6.0e-26 120.9 90 71.1
BcaB02g07198 Brassica carinata HOM05D001527 ORTHO05D016041 7.8e-26 120.6 83 75.9
BcaNung05983 Brassica carinata HOM05D000736 ORTHO05D007707 1.0e-25 120.2 79 78.5
BcaB08g34480 Brassica carinata HOM05D000736 ORTHO05D007707 9.5e-24 113.6 66 83.3
Sp3g23320 Schrenkiella parvula HOM05D000736 ORTHO05D007707 2.8e-23 112.1 66 81.8
BcaC01g03196 Brassica carinata HOM05D000736 ORTHO05D007707 6.8e-22 107.5 77 70.1
BolC3t17774H Brassica oleracea HOM05D000736 ORTHO05D007707 6.8e-22 107.5 77 70.1
BraA03t13568Z Brassica rapa HOM05D000736 ORTHO05D007707 1.5e-21 106.3 66 78.8
C03p54990 Brassica napus HOM05D000736 ORTHO05D007707 4.4e-21 104.8 60 85.0
Thhalv10002523m.g Eutrema salsugineum HOM05D000736 ORTHO05D007707 4.4e-21 104.8 66 77.3
A03p44380 Brassica napus HOM05D000736 ORTHO05D007707 5.8e-21 104.4 58 86.2
Aa31sc76G30 Aethionema arabicum HOM05D000736 ORTHO05D007707 1.3e-20 103.2 58 84.5
AL3G42180 Arabidopsis lyrata HOM05D000736 ORTHO05D007707 1.3e-20 103.2 66 77.3
AT2G04540 Arabidopsis thaliana HOM05D000736 ORTHO05D007707 1.3e-20 103.2 66 77.3
THA.LOC104808867 Tarenaya hassleriana HOM05D000736 ORTHO05D007707 3.8e-20 101.7 58 79.3
Carub.0003s2617 Capsella rubella HOM05D000736 ORTHO05D007707 2.1e-18 95.9 56 80.4
Nitab4.5_0000130g0180 Nicotiana tabacum HOM05D000736 ORTHO05D007707 1.7e-17 92.8 58 72.4
Nitab4.5_0008746g0030 Nicotiana tabacum HOM05D000736 ORTHO05D007707 3.0e-17 92.0 58 72.4
CAN.G741.31 Capsicum annuum HOM05D000736 ORTHO05D007707 8.7e-17 90.5 58 70.7
DCAR_019736 Daucus carota HOM05D000736 ORTHO05D007707 8.7e-17 90.5 58 72.4
Prupe.3G206600 Prunus persica HOM05D000736 ORTHO05D007707 1.9e-16 89.4 56 75.0
Hma1.2p1_0133F.1_g060830 Hydrangea macrophylla HOM05D000736 ORTHO05D007707 4.3e-16 88.2 66 63.6
Hma1.2p1_0133F.1_g060840 Hydrangea macrophylla HOM05D000736 ORTHO05D007707 4.3e-16 88.2 66 63.6
Peaxi162Scf01333g00134 Petunia axillaris HOM05D000736 ORTHO05D007707 4.3e-16 88.2 58 69.0
MD09G1117200 Malus domestica HOM05D000736 ORTHO05D007707 5.6e-16 87.8 58 70.7
Manes.13G064800 Manihot esculenta HOM05D000736 ORTHO05D007707 5.6e-16 87.8 58 70.7
Eucgr.K00728 Eucalyptus grandis HOM05D000736 ORTHO05D007707 7.3e-16 87.4 58 69.0
CAN.G784.5 Capsicum annuum HOM05D000736 ORTHO05D007707 9.6e-16 87.0 58 67.2
Sabra02G0171100 Salix brachista HOM05D000736 ORTHO05D007707 9.6e-16 87.0 58 67.2
Sopen07g024970 Solanum pennellii HOM05D000736 ORTHO05D007707 9.6e-16 87.0 66 62.1
PGSC0003DMG400006426 Solanum tuberosum HOM05D000736 ORTHO05D007707 1.2e-15 86.7 58 67.2
Solyc07g049570.3 Solanum lycopersicum HOM05D000736 ORTHO05D007707 2.1e-15 85.9 58 67.2
Thecc.01G187600 Theobroma cacao HOM05D000736 ORTHO05D007707 2.1e-15 85.9 58 70.7
Eucgr.L03681 Eucalyptus grandis HOM05D000736 ORTHO05D007707 2.8e-15 85.5 66 62.1
QL08p029882 Quercus lobata HOM05D000736 ORTHO05D007707 2.8e-15 85.5 58 69.0
Sc20g0005080 Simmondsia chinensis HOM05D000736 ORTHO05D007707 2.8e-15 85.5 69 62.3
COL.COLO4_05386 Corchorus olitorius HOM05D000736 ORTHO05D007707 4.7e-15 84.7 58 69.0
Duzib133G0031 Durio zibethinus HOM05D000736 ORTHO05D007707 4.7e-15 84.7 58 69.0
FAN05G5831 Fragaria x ananassa HOM05D000736 ORTHO05D007707 4.7e-15 84.7 58 67.2
MD15G1342600 Malus domestica HOM05D000736 ORTHO05D016041 4.7e-15 84.7 66 62.1
Potri.002G219500 Populus trichocarpa HOM05D000736 ORTHO05D007707 4.7e-15 84.7 59 67.8
EL10Ac9g22789 Beta vulgaris HOM05D000736 ORTHO05D007707 6.2e-15 84.3 69 56.5
Cfa014296 Carpinus fangiana HOM05D000736 ORTHO05D007707 6.2e-15 84.3 58 67.2
Haze_12744 Corylus avellana HOM05D000736 ORTHO05D007707 6.2e-15 84.3 58 67.2
RcHm_v2.0_Chr2g0157571 Rosa chinensis HOM05D000736 ORTHO05D007707 6.2e-15 84.3 58 67.2
TWI75G0266 Tripterygium wilfordii HOM05D000736 ORTHO05D007707 6.2e-15 84.3 58 69.0
vmacro12143 Vaccinium macrocarpon HOM05D000736 ORTHO05D007707 6.2e-15 84.3 58 65.5
CSS0049875 Camellia sinensis var. sinensis HOM05D000736 ORTHO05D007707 8.1e-15 84.0 58 67.2
Glyma.13G128000 Glycine max HOM05D000736 ORTHO05D007707 8.1e-15 84.0 58 67.2
SalBow4G1832 Salvia bowleyana HOM05D000736 ORTHO05D007707 8.1e-15 84.0 58 69.0
SalBow8G3370 Salvia bowleyana HOM05D000736 ORTHO05D007707 1.1e-14 83.6 58 69.0
CANSAT64G0309 Cannabis sativa HOM05D000736 ORTHO05D007707 1.4e-14 83.2 58 67.2
Glyma.10G041100 Glycine max HOM05D000736 ORTHO05D007707 1.4e-14 83.2 58 67.2
FAN02G0028 Fragaria x ananassa HOM05D000736 ORTHO05D007707 1.8e-14 82.8 58 65.5
FAN09G3712 Fragaria x ananassa HOM05D000736 ORTHO05D007707 1.8e-14 82.8 58 65.5
FAN14G0144 Fragaria x ananassa HOM05D000736 ORTHO05D007707 1.8e-14 82.8 58 65.5
Aqoxy1G04108 Aquilegia oxysepala HOM05D000736 ORTHO05D007707 2.4e-14 82.4 58 63.8
Cpa.g.sc132.49 Carica papaya HOM05D000736 ORTHO05D007707 2.4e-14 82.4 58 67.2
CiPaw.04G192900 Carya illinoinensis HOM05D000736 ORTHO05D007707 2.4e-14 82.4 56 67.9
ClCG02G018200 Citrullus lanatus HOM05D000736 ORTHO05D007707 2.4e-14 82.4 58 65.5
Lsat_1_v5_gn_7_94701 Lactuca sativa HOM05D000736 ORTHO05D007707 2.4e-14 82.4 66 62.1
Lj1A785G51 Lonicera japonica HOM05D000736 ORTHO05D007707 2.4e-14 82.4 58 67.2
MBI13_g30073_MAGBIO Magnolia biondii HOM05D000736 ORTHO05D007707 2.4e-14 82.4 58 70.7
Sopen07g024940 Solanum pennellii HOM05D000736 ORTHO05D016041 2.4e-14 82.4 56 66.1
GSVIVG01030537001 Vitis vinifera HOM05D000736 ORTHO05D007707 2.4e-14 82.4 58 65.5
Nn1g07966 Nelumbo nucifera HOM05D000736 ORTHO05D007707 3.1e-14 82.0 58 67.2
Oeu043936.2 Olea europaea HOM05D000736 ORTHO05D007707 4.0e-14 81.6 58 67.2
Dinv08704 Davidia involucrata HOM05D000736 ORTHO05D007707 5.2e-14 81.3 66 57.6
Atru.chr6.3280 Acer truncatum HOM05D000736 ORTHO05D007707 6.9e-14 80.9 58 65.5
Atru.chr6.3296 Acer truncatum HOM05D000736 ORTHO05D007707 6.9e-14 80.9 58 65.5
CSS0040036 Camellia sinensis var. sinensis HOM05D000736 ORTHO05D007707 1.2e-13 80.1 56 66.1
Migut.F02001 Erythranthe guttata HOM05D000736 ORTHO05D007707 1.2e-13 80.1 58 63.8
Cc04_g10360 Coffea canephora HOM05D000736 ORTHO05D007707 1.5e-13 79.7 58 62.1
SGA_v2.0_scaffold478G52232 Striga asiatica HOM05D000736 ORTHO05D007707 1.5e-13 79.7 58 63.8
Phvul.007G154300 Phaseolus vulgaris HOM05D000736 ORTHO05D007707 2.0e-13 79.3 58 65.5
Ciclev10015116m.g Citrus clementina HOM05D000736 ORTHO05D007707 2.6e-13 79.0 58 63.8
Rhsim06G0170000 Rhododendron simsii HOM05D000736 ORTHO05D007707 2.6e-13 79.0 56 62.5
AUR62017566 Chenopodium quinoa HOM05D000736 ORTHO05D007707 3.4e-13 78.6 58 65.5
Sed0016142 Sechium edule HOM05D000736 ORTHO05D007707 3.4e-13 78.6 58 63.8
Hund24130 Selenicereus undatus HOM05D000736 ORTHO05D007707 4.4e-13 78.2 72 50.0
CsaV3_6G015580 Cucumis sativus L. HOM05D000736 ORTHO05D007707 5.8e-13 77.8 58 62.1
unitig_85.g27432 Utricularia gibba HOM05D000736 ORTHO05D007707 5.8e-13 77.8 58 62.1
Gohir.A11G151800 Gossypium hirsutum HOM05D000736 ORTHO05D007707 7.6e-13 77.4 58 63.8
CDE07G0785 Ceratophyllum demersum HOM05D000736 ORTHO05D007707 9.9e-13 77.0 58 60.3
MSTRG.27459 Avicennia marina HOM05D000736 ORTHO05D007707 1.3e-12 76.6 58 62.1
Lj5g0007920 Lotus japonicus HOM05D000736 ORTHO05D007707 1.3e-12 76.6 58 62.1
TAR624G0711 Trochodendron aralioides HOM05D000736 ORTHO05D007707 1.3e-12 76.6 58 63.8
Gohir.D11G158800 Gossypium hirsutum HOM05D000736 ORTHO05D007707 1.7e-12 76.3 58 62.1
Gorai.007G169200 Gossypium raimondii HOM05D000736 ORTHO05D007707 1.7e-12 76.3 58 62.1
Ah.01g001800 Amaranthus hybridus HOM05D003198 ORTHO05D007707 2.9e-12 75.5 70 55.7
VMungo0720G0104 Vigna mungo HOM05D000736 ORTHO05D007707 2.9e-12 75.5 58 62.1
AUR62015104 Chenopodium quinoa HOM05D000736 ORTHO05D007707 3.8e-12 75.1 58 62.1
MELO3C019716.2 Cucumis melo HOM05D000736 ORTHO05D007707 3.8e-12 75.1 58 60.3
PGR004G0976 Punica granatum HOM05D000736 ORTHO05D007707 3.8e-12 75.1 58 58.6
Hund24199 Selenicereus undatus HOM05D000004 ORTHO05D007707 3.8e-12 75.1 58 58.6
ATR1101G028 Amborella trichopoda HOM05D000736 ORTHO05D007707 4.9e-12 74.7 58 63.8
HanXRQChr16g0508321 Helianthus annuus HOM05D000736 ORTHO05D007707 4.9e-12 74.7 58 60.3
ECA236G4050 Erigeron canadensis HOM05D000736 ORTHO05D007707 6.4e-12 74.3 56 64.3
arahy.Tifrunner.gnm1.ann1.T4YVHB Arachis hypogaea HOM05D000736 ORTHO05D007707 8.4e-12 73.9 58 62.1
arahy.Tifrunner.gnm1.ann1.L1XSI7 Arachis hypogaea HOM05D000736 ORTHO05D007707 1.1e-11 73.6 58 62.1
Lalb_Chr06g0170771 Lupinus albus HOM05D000736 ORTHO05D007707 1.1e-11 73.6 58 62.1
Medtr1g069385 Medicago truncatula HOM05D000736 ORTHO05D007707 1.4e-11 73.2 58 60.3
TPR.G17941 Trifolium pratense HOM05D000736 ORTHO05D007707 1.4e-11 73.2 58 60.3
Ca_09638_v3 Cicer arietinum L. HOM05D000736 ORTHO05D007707 1.9e-11 72.8 58 60.3
PSO210G3553 Papaver somniferum HOM05D000736 ORTHO05D007707 3.2e-11 72.0 58 60.3
PSO302G0194 Papaver somniferum HOM05D000736 ORTHO05D007707 3.2e-11 72.0 58 60.3
CBR_g41120 Chara braunii HOM05D000736 ORTHO05D007707 9.3e-11 70.5 60 56.7
Duzib138G1396 Durio zibethinus HOM05D000736 ORTHO05D007707 1.0e-09 67.0 53 60.4
HPP92_002526 Vanilla planifolia HOM05D000736 ORTHO05D007707 1.3e-09 66.6 58 55.2
Psat6g215480 Pisum sativum HOM05D000736 ORTHO05D016041 3.0e-09 65.5 56 60.7
Psat6g064360 Pisum sativum HOM05D000736 ORTHO05D016041 3.9e-09 65.1 65 53.8
SEGI_02920 Sequoiadendron giganteum HOM05D000736 ORTHO05D007707 4.8e-07 58.2 58 46.6


User provided reference genes

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