Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25855 Brassica carinata HOM05D007021 ORTHO05D008916 7.3e-93 344.0 186 100.0
C05p48360 Brassica napus HOM05D007021 ORTHO05D008916 8.4e-81 303.9 189 88.4
Thhalv10021570m.g Eutrema salsugineum HOM05D007021 ORTHO05D008916 1.0e-73 280.4 192 82.8
Sp3g16050 Schrenkiella parvula HOM05D007021 ORTHO05D008916 6.5e-73 277.7 196 84.2
BcaC05g28735 Brassica carinata HOM05D007021 ORTHO05D008916 2.1e-71 272.7 189 81.0
BolC5t33573H Brassica oleracea HOM05D007021 ORTHO05D008916 2.1e-71 272.7 189 81.0
A05p31870 Brassica napus HOM05D007021 ORTHO05D008916 5.1e-70 268.1 189 79.9
BraA05t22019Z Brassica rapa HOM05D007021 ORTHO05D008916 5.1e-70 268.1 189 79.9
CARHR093260 Cardamine hirsuta HOM05D007021 ORTHO05D008916 7.4e-69 264.2 189 81.0
Aa31LG8G4800 Aethionema arabicum HOM05D007021 ORTHO05D008916 2.6e-58 229.2 188 71.8
Carub.0003s1766 Capsella rubella HOM05D007021 ORTHO05D008916 3.8e-57 225.3 192 71.4
AT3G17930 Arabidopsis thaliana HOM05D007021 ORTHO05D008916 6.5e-57 224.6 192 70.8
AL3G31100 Arabidopsis lyrata HOM05D007021 ORTHO05D008916 8.5e-57 224.2 192 70.8
THA.LOC104821829 Tarenaya hassleriana HOM05D007021 ORTHO05D008916 1.7e-49 199.9 188 64.4
CANSAT80G0297 Cannabis sativa HOM05D007021 ORTHO05D008916 6.7e-46 188.0 157 68.2
MD06G1228200 Malus domestica HOM05D007021 ORTHO05D008916 6.7e-46 188.0 124 76.6
Potri.015G036500 Populus trichocarpa HOM05D007021 ORTHO05D008916 8.8e-46 187.6 130 73.8
QL10p030610 Quercus lobata HOM05D007021 ORTHO05D008916 1.1e-45 187.2 204 54.4
Lalb_Chr05g0221591 Lupinus albus HOM05D007021 ORTHO05D008916 1.5e-45 186.8 121 77.7
Prupe.5G234700 Prunus persica HOM05D007021 ORTHO05D008916 1.5e-45 186.8 129 73.6
CANSAT80G1746 Cannabis sativa HOM05D007021 ORTHO05D008916 2.0e-45 186.4 157 67.5
GSVIVG01008459001 Vitis vinifera HOM05D007021 ORTHO05D008916 4.4e-45 185.3 171 60.2
Psat7g001280 Pisum sativum HOM05D007021 ORTHO05D008916 7.4e-45 184.5 109 84.4
Cfa019639 Carpinus fangiana HOM05D007021 ORTHO05D008916 1.3e-44 183.7 124 73.4
PGR044G2095 Punica granatum HOM05D007021 ORTHO05D008916 1.3e-44 183.7 192 57.3
Thecc.03G058600 Theobroma cacao HOM05D007021 ORTHO05D008916 1.3e-44 183.7 153 65.4
HanXRQChr15g0486591 Helianthus annuus HOM05D007021 ORTHO05D008916 2.2e-44 183.0 122 78.7
RcHm_v2.0_Chr7g0178211 Rosa chinensis HOM05D007021 ORTHO05D008916 2.2e-44 183.0 124 75.8
Dinv18013 Davidia involucrata HOM05D007021 ORTHO05D008916 2.8e-44 182.6 129 72.9
Lj4g0002555 Lotus japonicus HOM05D007021 ORTHO05D008916 2.8e-44 182.6 119 77.3
Manes.06G004800 Manihot esculenta HOM05D007021 ORTHO05D008916 2.8e-44 182.6 124 75.8
Atru.chr9.1670 Acer truncatum HOM05D007021 ORTHO05D008916 4.8e-44 181.8 152 64.5
FvH4_5g17480 Fragaria vesca HOM05D007021 ORTHO05D008916 6.3e-44 181.4 165 64.2
FAN18G1853 Fragaria x ananassa HOM05D007021 ORTHO05D008916 6.3e-44 181.4 165 64.2
Glyma.05G246900 Glycine max HOM05D007021 ORTHO05D008916 6.3e-44 181.4 121 78.5
Glyma.08G055300 Glycine max HOM05D007021 ORTHO05D008916 6.3e-44 181.4 121 79.3
Migut.I00268 Erythranthe guttata HOM05D007021 ORTHO05D008916 8.2e-44 181.0 143 69.2
FAN04G2374 Fragaria x ananassa HOM05D007021 ORTHO05D008916 8.2e-44 181.0 165 64.8
Solyc05g006440.4 Solanum lycopersicum HOM05D007021 ORTHO05D008916 8.2e-44 181.0 163 62.0
FAN08G1321 Fragaria x ananassa HOM05D007021 ORTHO05D008916 1.1e-43 180.6 165 64.2
Hma1.2p1_0163F.1_g073000 Hydrangea macrophylla HOM05D007021 ORTHO05D008916 1.1e-43 180.6 133 69.9
Sopen05g002370 Solanum pennellii HOM05D007021 ORTHO05D008916 1.1e-43 180.6 163 62.0
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.4e-43 180.3 129 72.9
Sabra15G0029900 Salix brachista HOM05D007021 ORTHO05D008916 1.4e-43 180.3 133 71.4
FAN13G1201 Fragaria x ananassa HOM05D007021 ORTHO05D008916 2.4e-43 179.5 130 75.4
Aqoxy1G00082 Aquilegia oxysepala HOM05D007021 ORTHO05D008916 3.1e-43 179.1 144 70.8
PGSC0003DMG400022612 Solanum tuberosum HOM05D007021 ORTHO05D008916 3.1e-43 179.1 192 55.2
ECA232G1431 Erigeron canadensis HOM05D000006 ORTHO05D000091 5.3e-43 178.3 115 77.4
CSS0017706 Camellia sinensis var. sinensis HOM05D007021 ORTHO05D008916 9.1e-43 177.6 150 64.7
Ciclev10009503m.g Citrus clementina HOM05D007021 ORTHO05D008916 9.1e-43 177.6 157 64.3
CiPaw.16G096000 Carya illinoinensis HOM05D007021 ORTHO05D008916 1.2e-42 177.2 123 73.2
Cpa.g.sc3.381 Carica papaya HOM05D007021 ORTHO05D008916 1.6e-42 176.8 108 79.6
Cc04_g06110 Coffea canephora HOM05D007021 ORTHO05D008916 1.6e-42 176.8 107 83.2
arahy.Tifrunner.gnm1.ann1.I2I16V Arachis hypogaea HOM05D007021 ORTHO05D008916 2.0e-42 176.4 122 75.4
Oeu046158.1 Olea europaea HOM05D007021 ORTHO05D008916 2.0e-42 176.4 110 80.9
COL.COLO4_28897 Corchorus olitorius HOM05D007021 ORTHO05D008916 2.6e-42 176.0 152 65.8
arahy.Tifrunner.gnm1.ann1.2FQ1SS Arachis hypogaea HOM05D007021 ORTHO05D008916 3.5e-42 175.6 121 76.9
ClCG06G014200 Citrullus lanatus HOM05D007021 ORTHO05D008916 3.5e-42 175.6 135 69.6
Gohir.A09G174900 Gossypium hirsutum HOM05D007021 ORTHO05D008916 3.5e-42 175.6 165 58.2
Gohir.D09G170185 Gossypium hirsutum HOM05D007021 ORTHO05D008916 3.5e-42 175.6 121 75.2
Nn7g37125 Nelumbo nucifera HOM05D007021 ORTHO05D008916 3.5e-42 175.6 167 59.9
TAR623G0728 Trochodendron aralioides HOM05D007021 ORTHO05D008916 3.5e-42 175.6 122 73.0
VMungo0251G3404 Vigna mungo HOM05D007021 ORTHO05D008916 3.5e-42 175.6 144 66.0
CsaV3_1G004470 Cucumis sativus L. HOM05D007021 ORTHO05D008916 4.5e-42 175.3 113 77.9
CAN.G159.4 Capsicum annuum HOM05D007021 ORTHO05D008916 5.9e-42 174.9 134 70.9
Gorai.006G191500 Gossypium raimondii HOM05D007021 ORTHO05D008916 7.7e-42 174.5 170 57.1
Rhsim12G0138000 Rhododendron simsii HOM05D007021 ORTHO05D008916 7.7e-42 174.5 114 77.2
Sed0001257 Sechium edule HOM05D007021 ORTHO05D008916 7.7e-42 174.5 123 71.5
MSTRG.11303 Avicennia marina HOM05D007021 ORTHO05D008916 1.0e-41 174.1 129 69.0
Lsat_1_v5_gn_8_115881 Lactuca sativa HOM05D007021 ORTHO05D008916 1.0e-41 174.1 133 71.4
Lj9A418T22 Lonicera japonica HOM05D007021 ORTHO05D008916 1.0e-41 174.1 109 79.8
Sc04g0004860 Simmondsia chinensis HOM05D007021 ORTHO05D008916 1.0e-41 174.1 169 59.2
HPP92_019433 Vanilla planifolia HOM05D007021 ORTHO05D008916 1.0e-41 174.1 122 73.8
MELO3C017374.2 Cucumis melo HOM05D007021 ORTHO05D008916 1.3e-41 173.7 123 71.5
Os01g0805200 Oryza sativa ssp. japonica HOM05D007021 ORTHO05D008916 1.3e-41 173.7 109 79.8
Zm00001eb150510 Zea mays HOM05D007021 ORTHO05D008916 1.3e-41 173.7 187 51.9
PSO339G6055 Papaver somniferum HOM05D007021 ORTHO05D008916 1.7e-41 173.3 192 54.2
TPR.G1394 Trifolium pratense HOM05D007021 ORTHO05D008916 1.7e-41 173.3 132 68.2
Nitab4.5_0002312g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 2.2e-41 172.9 107 80.4
Nitab4.5_0004119g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 2.2e-41 172.9 107 80.4
Phvul.002G331000 Phaseolus vulgaris HOM05D007021 ORTHO05D008916 3.8e-41 172.2 123 71.5
TWI81G0868 Tripterygium wilfordii HOM05D007021 ORTHO05D008916 3.8e-41 172.2 122 72.1
Gorai.003G035100 Gossypium raimondii HOM05D007021 ORTHO05D008916 8.5e-41 171.0 121 74.4
Eucgr.K02276 Eucalyptus grandis HOM05D007021 ORTHO05D008916 1.1e-40 170.6 126 73.0
Gohir.D03G033500 Gossypium hirsutum HOM05D007021 ORTHO05D008916 3.2e-40 169.1 121 72.7
Gohir.D08G085600 Gossypium hirsutum HOM05D007021 ORTHO05D008916 4.2e-40 168.7 121 72.7
MBI13_g41749_MAGBIO Magnolia biondii HOM05D007021 ORTHO05D008916 4.2e-40 168.7 106 77.4
Gorai.004G090100 Gossypium raimondii HOM05D007021 ORTHO05D008916 5.5e-40 168.3 142 64.8
Medtr8g107430 Medicago truncatula HOM05D007021 ORTHO05D008916 5.5e-40 168.3 105 79.0
PSO384G2008 Papaver somniferum HOM05D007021 ORTHO05D008916 7.2e-40 167.9 107 78.5
ATR1096G089 Amborella trichopoda HOM05D007021 ORTHO05D008916 9.4e-40 167.5 173 53.2
Hund08707 Selenicereus undatus HOM05D007021 ORTHO05D008916 2.1e-39 166.4 114 71.1
unitig_899.g15339 Utricularia gibba HOM05D007021 ORTHO05D008916 3.6e-39 165.6 134 66.4
Haze_18883 Corylus avellana HOM05D007021 ORTHO05D008916 2.3e-38 162.9 126 67.5
SEGI_41594 Sequoiadendron giganteum HOM05D007021 ORTHO05D008916 1.2e-37 160.6 119 68.1
CDE04G1339 Ceratophyllum demersum HOM05D000015 ORTHO05D002445 7.5e-37 157.9 131 64.9
AagrBONN_evm.TU.Sc2ySwM_117.710 Anthoceros agrestis HOM05D007021 ORTHO05D008916 1.3e-36 157.1 123 65.0
AagrBONN_evm.TU.Sc2ySwM_340.579 Anthoceros agrestis HOM05D007021 ORTHO05D008916 2.8e-36 156.0 123 64.2
Pp3c5_23310 Physcomitrium patens HOM05D007021 ORTHO05D008916 2.8e-36 156.0 119 65.5
EL10Ac8g19152 Beta vulgaris HOM05D007021 ORTHO05D008916 4.8e-36 155.2 105 72.4
Mapoly0023s0040 Marchantia polymorpha HOM05D007021 ORTHO05D008916 6.3e-36 154.8 142 57.7
CDE07G1635 Ceratophyllum demersum HOM05D007021 ORTHO05D008916 6.5e-33 144.8 118 65.3
SMO353G0175 Selaginella moellendorffii HOM05D007021 ORTHO05D008916 1.9e-32 143.3 151 51.0
CBR_g48186 Chara braunii HOM05D007021 ORTHO05D008916 2.0e-29 133.3 115 56.5
Gohir.1Z049463 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.3e-28 130.6 170 48.8
DCAR_014390 Daucus carota HOM05D007021 ORTHO05D008916 2.2e-28 129.8 79 82.3
Peaxi162Scf00828g00016 Petunia axillaris HOM05D007021 ORTHO05D008916 1.4e-27 127.1 78 80.8
Duzib068G0088 Durio zibethinus HOM05D007021 ORTHO05D008916 5.4e-27 125.2 78 79.5
AUR62025165 Chenopodium quinoa HOM05D007021 ORTHO05D008916 5.0e-25 118.6 76 75.0
AUR62029014 Chenopodium quinoa HOM05D007021 ORTHO05D008916 5.0e-25 118.6 76 75.0
Cre01.g000850 Chlamydomonas reinhardtii HOM05D007021 ORTHO05D008916 1.1e-24 117.5 125 50.4
MD14G1237400 Malus domestica HOM05D007021 ORTHO05D008916 4.5e-18 95.5 53 83.0
Oeu010907.1 Olea europaea HOM05D007021 ORTHO05D008916 1.0e-17 94.4 53 83.0
MCO16G182 Micromonas commoda HOM05D007021 ORTHO05D008916 1.3e-17 94.0 79 58.2
PRCOL_00000692 Prasinoderma coloniale HOM05D007021 ORTHO05D008916 1.1e-16 90.9 114 43.0


User provided reference genes

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