Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25842 Brassica carinata HOM05D003268 ORTHO05D003719 4.2e-110 401.4 203 100.0
C05p48980 Brassica napus HOM05D003268 ORTHO05D003719 3.9e-71 271.9 190 75.3
BolC5t33638H Brassica oleracea HOM05D003268 ORTHO05D003719 3.9e-71 271.9 190 75.3
BcaC05g28789 Brassica carinata HOM05D003268 ORTHO05D003719 1.4e-68 263.5 191 73.8
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 3.3e-46 189.1 207 52.7
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.3e-45 187.2 207 52.2
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 2.1e-37 159.8 174 52.3
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 2.1e-37 159.8 174 52.3
AL3G30540 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 1.8e-36 156.8 194 46.4
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 5.3e-36 155.2 208 45.7
Carub.0003s1718 Capsella rubella HOM05D003268 ORTHO05D003719 1.7e-34 150.2 204 45.1
BcaC09g48702 Brassica carinata HOM05D003268 ORTHO05D003719 2.9e-34 149.4 194 49.0
C01p46780 Brassica napus HOM05D003268 ORTHO05D003719 2.9e-34 149.4 194 49.0
BolC1t04651H Brassica oleracea HOM05D003268 ORTHO05D003719 2.9e-34 149.4 194 49.0
C01p46720 Brassica napus HOM05D003268 ORTHO05D003719 6.5e-34 148.3 163 52.8
AT3G17460 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 1.6e-32 143.7 195 43.6
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 2.7e-32 142.9 208 40.9
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 1.9e-30 136.7 175 49.7
BraA01t03748Z Brassica rapa HOM05D003268 ORTHO05D003719 2.5e-30 136.3 184 48.4
A01p36890 Brassica napus HOM05D003268 ORTHO05D003719 3.3e-30 136.0 184 48.4
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 1.1e-28 131.0 205 42.4
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 6.9e-28 128.3 172 44.2
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 2.5e-25 119.8 184 42.4
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 4.6e-24 115.5 208 38.9
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 1.0e-23 114.4 193 39.9
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 5.1e-23 112.1 201 37.8
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 1.9e-22 110.2 182 38.5
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 3.7e-21 105.9 171 41.5
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 8.2e-21 104.8 186 39.2
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 8.2e-21 104.8 186 39.2
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 4.5e-19 99.0 178 36.0
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 7.7e-19 98.2 189 36.5
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 1.3e-18 97.4 153 39.9
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 2.9e-18 96.3 170 37.6
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 6.5e-18 95.1 161 37.9
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 1.4e-17 94.0 162 38.3
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 1.4e-17 94.0 216 33.8
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 3.2e-17 92.8 160 36.9
TWI09G0361 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 5.5e-17 92.0 160 36.9
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 7.2e-17 91.7 170 33.5
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 1.2e-16 90.9 159 34.6
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 1.6e-16 90.5 206 32.5
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 2.7e-16 89.7 153 39.9
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 2.7e-16 89.7 153 39.9
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 2.7e-16 89.7 159 33.3
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 3.6e-16 89.4 167 32.9
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 4.6e-16 89.0 207 32.9
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 4.6e-16 89.0 161 32.9
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 6.1e-16 88.6 172 31.4
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 1.0e-15 87.8 162 34.6
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 1.8e-15 87.0 167 37.7
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 3.9e-15 85.9 180 31.7
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 5.1e-15 85.5 161 36.0
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 5.1e-15 85.5 181 31.5
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 6.7e-15 85.1 183 35.5
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 6.7e-15 85.1 136 38.2
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 8.8e-15 84.7 161 36.0
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 1.1e-14 84.3 179 34.1
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 1.5e-14 84.0 185 33.5
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 2.5e-14 83.2 152 36.8
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 2.5e-14 83.2 197 32.5
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 3.3e-14 82.8 135 40.0
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 4.3e-14 82.4 170 31.2
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 4.3e-14 82.4 167 34.1
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 4.3e-14 82.4 177 35.0
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 4.3e-14 82.4 200 31.5
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 5.7e-14 82.0 155 36.8
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 5.7e-14 82.0 195 28.7
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 5.7e-14 82.0 193 31.1
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 5.7e-14 82.0 187 33.2
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 5.7e-14 82.0 162 32.1
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 7.4e-14 81.6 162 32.1
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 7.4e-14 81.6 172 37.2
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 7.4e-14 81.6 172 37.2
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 7.4e-14 81.6 178 34.3
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 7.4e-14 81.6 175 33.7
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 7.4e-14 81.6 135 39.3
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 9.7e-14 81.3 186 34.9
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 9.7e-14 81.3 186 34.9
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 9.7e-14 81.3 159 35.2
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 9.7e-14 81.3 161 32.3
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 1.3e-13 80.9 184 30.4
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 1.3e-13 80.9 112 42.0
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 1.7e-13 80.5 192 31.2
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 1.7e-13 80.5 199 30.2
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 1.7e-13 80.5 112 42.0
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.7e-13 80.5 187 32.1
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 1.7e-13 80.5 187 32.1
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.7e-13 80.5 188 32.4
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 1.7e-13 80.5 184 32.1
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 2.2e-13 80.1 177 33.3
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 2.2e-13 80.1 203 33.5
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 2.2e-13 80.1 197 32.0
Aqoxy5G02799 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 2.8e-13 79.7 186 32.3
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 2.8e-13 79.7 179 35.8
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 3.7e-13 79.3 196 34.2
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 4.8e-13 79.0 160 30.6
BraA08t35364Z Brassica rapa HOM05D003268 ORTHO05D003719 6.3e-13 78.6 150 40.0
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 6.3e-13 78.6 167 31.7
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 8.2e-13 78.2 173 37.0
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 8.2e-13 78.2 166 33.7
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 8.2e-13 78.2 200 30.5
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 1.1e-12 77.8 190 28.4
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 1.4e-12 77.4 170 31.8
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.4e-12 77.4 195 33.8
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 1.4e-12 77.4 152 36.2
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 1.8e-12 77.0 188 34.6
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 1.8e-12 77.0 188 34.6
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 1.8e-12 77.0 179 33.0
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 2.4e-12 76.6 186 32.3
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 2.4e-12 76.6 164 35.4
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 3.1e-12 76.3 169 32.0
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 4.1e-12 75.9 141 37.6
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 4.1e-12 75.9 166 32.5
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 5.3e-12 75.5 166 33.7
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 5.3e-12 75.5 158 36.1
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 9.1e-12 74.7 187 33.2
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 1.2e-11 74.3 200 31.5
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.2e-11 74.3 155 35.5
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 1.5e-11 73.9 164 33.5
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 1.5e-11 73.9 147 34.7
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 1.5e-11 73.9 181 32.0
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.5e-11 73.9 208 29.3
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 1.5e-11 73.9 165 33.9
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 1.5e-11 73.9 154 31.2
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.0e-11 73.6 207 30.4
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 2.6e-11 73.2 199 33.2
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 3.4e-11 72.8 198 30.3
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 3.4e-11 72.8 198 30.3
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 3.4e-11 72.8 152 32.9
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 3.4e-11 72.8 183 32.2
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 4.5e-11 72.4 162 34.6
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 4.5e-11 72.4 183 33.3
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 4.5e-11 72.4 166 31.3
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 4.5e-11 72.4 162 30.2
A08p34530 Brassica napus HOM05D003268 ORTHO05D003719 5.9e-11 72.0 149 37.6
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 7.7e-11 71.6 200 33.0
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 7.7e-11 71.6 180 31.7
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 7.7e-11 71.6 171 34.5
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 1.0e-10 71.2 199 28.6
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 1.3e-10 70.9 181 29.8
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 1.3e-10 70.9 197 32.0
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 1.3e-10 70.9 180 32.2
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 2.9e-10 69.7 187 30.5
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 3.8e-10 69.3 193 30.1
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 3.8e-10 69.3 186 28.0
Lj4g0025064 Lotus japonicus HOM05D003268 ORTHO05D003719 5.0e-10 68.9 183 29.5
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 6.5e-10 68.6 175 35.4
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 6.5e-10 68.6 160 32.5
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 6.5e-10 68.6 183 31.1
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 6.5e-10 68.6 180 31.1
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 6.5e-10 68.6 155 31.6
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 6.5e-10 68.6 121 38.0
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 1.1e-09 67.8 205 31.2
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 1.4e-09 67.4 177 33.9
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 2.5e-09 66.6 173 34.1
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 4.2e-09 65.9 155 32.9
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 5.5e-09 65.5 110 39.1
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 1.6e-08 63.9 181 33.1
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 1.6e-08 63.9 184 33.2
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 1.6e-08 63.9 140 30.7
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 3.6e-08 62.8 179 34.6
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 4.7e-08 62.4 138 35.5
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 4.7e-08 62.4 205 26.3
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 4.7e-08 62.4 84 34.5
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 7.9e-08 61.6 182 26.4
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 1.4e-07 60.8 195 24.6
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 1.8e-07 60.5 189 29.6


User provided reference genes

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