Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25687 Brassica carinata HOM05D002758 ORTHO05D002885 2.8e-62 241.9 134 100.0
A05p33610 Brassica napus HOM05D002758 ORTHO05D002885 1.6e-60 236.1 134 87.3
C05p50610 Brassica napus HOM05D002758 ORTHO05D002885 1.6e-60 236.1 134 87.3
BolC5t33807H Brassica oleracea HOM05D002758 ORTHO05D002885 4.5e-60 234.6 134 86.6
BraA05t22185Z Brassica rapa HOM05D002758 ORTHO05D002885 5.9e-60 234.2 134 86.6
BcaC05g28933 Brassica carinata HOM05D002758 ORTHO05D002885 2.9e-59 231.9 134 87.3
BcaB04g20905 Brassica carinata HOM05D002758 ORTHO05D002885 6.3e-54 214.2 135 80.7
Sp3g14090 Schrenkiella parvula HOM05D002758 ORTHO05D002885 7.2e-50 200.7 139 84.2
AL3G28420 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 8.0e-49 197.2 136 75.0
Carub.0003s1550 Capsella rubella HOM05D002758 ORTHO05D002885 2.6e-47 192.2 136 74.3
C01p48670 Brassica napus HOM05D002758 ORTHO05D002885 3.4e-47 191.8 142 73.9
BcaC09g48555 Brassica carinata HOM05D002758 ORTHO05D002885 1.3e-46 189.9 141 73.8
BolC1t04821H Brassica oleracea HOM05D002758 ORTHO05D002885 1.3e-46 189.9 141 73.8
Thhalv10021746m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 1.7e-46 189.5 138 76.1
Aa31LG8G2960 Aethionema arabicum HOM05D002758 ORTHO05D002885 8.3e-46 187.2 138 76.1
AT3G15760 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 1.4e-45 186.4 136 72.1
CARHR090850 Cardamine hirsuta HOM05D002758 ORTHO05D002885 1.4e-45 186.4 136 70.6
A01p38340 Brassica napus HOM05D002758 ORTHO05D002885 4.2e-42 174.9 142 78.9
BraA01t03885Z Brassica rapa HOM05D002758 ORTHO05D002885 4.2e-42 174.9 142 78.2
Thhalv10011857m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 6.6e-35 151.0 135 69.6
C06p14110 Brassica napus HOM05D002758 ORTHO05D002885 1.1e-34 150.2 138 68.8
BolC6t36589H Brassica oleracea HOM05D002758 ORTHO05D002885 1.1e-34 150.2 138 68.8
BraA05t20788Z Brassica rapa HOM05D002758 ORTHO05D002885 5.6e-34 147.9 136 69.1
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 7.3e-34 147.5 138 63.8
Sp1g39120 Schrenkiella parvula HOM05D002758 ORTHO05D002885 1.6e-33 146.4 137 70.8
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 6.2e-33 144.4 135 63.0
A06p01750 Brassica napus HOM05D002758 ORTHO05D002885 4.0e-32 141.7 135 67.4
BcaB02g10984 Brassica carinata HOM05D002758 ORTHO05D002885 5.2e-32 141.4 134 68.7
AL1G60820 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 8.9e-32 140.6 136 67.6
AT1G52565 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 8.9e-32 140.6 135 69.6
BraA06t23394Z Brassica rapa HOM05D002758 ORTHO05D002885 8.9e-32 140.6 135 66.7
CARHR042690 Cardamine hirsuta HOM05D002758 ORTHO05D002885 5.8e-31 137.9 137 62.8
BolC6t35882H Brassica oleracea HOM05D002758 ORTHO05D002885 7.5e-31 137.5 140 60.0
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 9.8e-31 137.1 140 60.0
Carub.0001s4153 Capsella rubella HOM05D002758 ORTHO05D002885 3.2e-29 132.1 135 67.4
BcaC08g43430 Brassica carinata HOM05D002758 ORTHO05D002885 2.0e-28 129.4 136 59.6
THA.LOC104815531 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 4.6e-28 128.3 137 65.0
Aa31LG10G2440 Aethionema arabicum HOM05D002758 ORTHO05D002885 3.1e-24 115.5 156 50.6
C06p07990 Brassica napus HOM05D002758 ORTHO05D002885 1.5e-23 113.2 144 51.4
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 1.9e-18 96.3 132 49.2
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 4.3e-18 95.1 132 49.2
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 5.6e-18 94.7 131 47.3
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.1e-17 92.8 132 46.2
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 2.1e-17 92.8 144 49.3
Cpa.g.sc10.256 Carica papaya HOM05D002758 ORTHO05D002885 2.8e-17 92.4 139 53.2
Manes.11G055700 Manihot esculenta HOM05D002758 ORTHO05D002885 4.7e-17 91.7 136 47.8
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 6.2e-17 91.3 131 46.6
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 3.1e-16 89.0 133 43.6
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 5.2e-16 88.2 132 45.5
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 1.2e-15 87.0 137 44.5
ClCG07G012650 Citrullus lanatus HOM05D002758 ORTHO05D002885 4.4e-15 85.1 138 53.6
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 4.4e-15 85.1 141 41.8
Sed0015979 Sechium edule HOM05D002758 ORTHO05D002885 9.9e-15 84.0 137 51.1
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 2.2e-14 82.8 142 43.0
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 4.9e-14 81.6 132 40.9
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 4.9e-14 81.6 132 40.9
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 4.9e-14 81.6 144 43.8
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 8.4e-14 80.9 144 45.1
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.4e-13 80.1 132 40.2
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 2.4e-13 79.3 131 42.0
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 4.1e-13 78.6 127 43.3
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 9.2e-13 77.4 132 42.4
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 2.1e-12 76.3 148 40.5
CANSAT56G1388 Cannabis sativa HOM05D002758 ORTHO05D002885 2.7e-12 75.9 140 41.4
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 2.3e-11 72.8 141 40.4
CiPaw.02G156300 Carya illinoinensis HOM05D002758 ORTHO05D002885 3.9e-11 72.0 138 40.6
MELO3C017886.2 Cucumis melo HOM05D002758 ORTHO05D002885 3.9e-11 72.0 135 50.4
PGR031G0668 Punica granatum HOM05D002758 ORTHO05D002885 3.9e-11 72.0 138 43.5
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 5.1e-11 71.6 141 39.7
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 8.6e-11 70.9 141 39.7
Hma1.2p1_1962F.1_g309250 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 8.6e-11 70.9 139 40.3
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 8.6e-11 70.9 134 38.1
PSO210G4958 Papaver somniferum HOM05D002758 ORTHO05D002885 1.9e-10 69.7 148 37.8
Sed0016112 Sechium edule HOM05D002758 ORTHO05D002885 1.9e-10 69.7 123 49.6
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 2.5e-10 69.3 142 40.8
Actinidia21981 Actinidia chinensis HOM05D002758 ORTHO05D002885 4.3e-10 68.6 127 41.7
DCAR_020919 Daucus carota HOM05D002758 ORTHO05D002885 5.6e-10 68.2 125 45.6
Nitab4.5_0005728g0010 Nicotiana tabacum HOM05D002758 ORTHO05D002885 9.6e-10 67.4 145 40.7
Cfa001976 Carpinus fangiana HOM05D002758 ORTHO05D002885 1.2e-09 67.0 139 37.4
MD15G1172200 Malus domestica HOM05D002758 ORTHO05D002885 1.2e-09 67.0 147 38.8
QL09p026717 Quercus lobata HOM05D002758 ORTHO05D002885 1.2e-09 67.0 138 46.4
arahy.Tifrunner.gnm1.ann1.3WRP69 Arachis hypogaea HOM05D002758 ORTHO05D002885 1.6e-09 66.6 138 44.9
arahy.Tifrunner.gnm1.ann1.A8WRUN Arachis hypogaea HOM05D002758 ORTHO05D002885 1.6e-09 66.6 138 44.9
Sed0027515 Sechium edule HOM05D002758 ORTHO05D002885 2.1e-09 66.2 130 40.8
CsaV3_4G001540 Cucumis sativus L. HOM05D002758 ORTHO05D002885 2.8e-09 65.9 138 44.9
Nitab4.5_0001764g0140 Nicotiana tabacum HOM05D002758 ORTHO05D002885 2.8e-09 65.9 138 40.6
Lj4g0007884 Lotus japonicus HOM05D002758 ORTHO05D002885 3.6e-09 65.5 133 42.1
TAR626G0616 Trochodendron aralioides HOM05D002758 ORTHO05D002885 3.6e-09 65.5 142 39.4
vmacro20564 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 3.6e-09 65.5 132 37.1
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 4.7e-09 65.1 137 36.5
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 4.7e-09 65.1 133 39.1
MD02G1030600 Malus domestica HOM05D002758 ORTHO05D002885 4.7e-09 65.1 149 38.3
Phvul.003G165200 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 4.7e-09 65.1 132 36.4
Thecc.09G127400 Theobroma cacao HOM05D002758 ORTHO05D002885 4.7e-09 65.1 137 41.6
RcHm_v2.0_Chr2g0088291 Rosa chinensis HOM05D002758 ORTHO05D002885 6.2e-09 64.7 146 37.7
Hund09249 Selenicereus undatus HOM05D002758 ORTHO05D002885 6.2e-09 64.7 95 45.3
FAN26G2290 Fragaria x ananassa HOM05D002758 ORTHO05D002885 8.1e-09 64.3 146 37.7
Manes.06G058000 Manihot esculenta HOM05D002758 ORTHO05D002885 8.1e-09 64.3 150 37.3
Actinidia40476 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.1e-08 63.9 131 37.4
FAN23G2585 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.1e-08 63.9 146 37.0
Sopen03g035550 Solanum pennellii HOM05D002758 ORTHO05D002885 1.1e-08 63.9 142 39.4
PGSC0003DMG400000615 Solanum tuberosum HOM05D002758 ORTHO05D002885 1.1e-08 63.9 139 40.3
arahy.Tifrunner.gnm1.ann1.75SBZZ Arachis hypogaea HOM05D002758 ORTHO05D002885 1.4e-08 63.5 139 38.1
FvH4_1g03160 Fragaria vesca HOM05D002758 ORTHO05D002885 1.4e-08 63.5 145 37.2
TAR383G0328 Trochodendron aralioides HOM05D002758 ORTHO05D002885 1.4e-08 63.5 124 37.9
VMungo1080G1568 Vigna mungo HOM05D002758 ORTHO05D002885 1.4e-08 63.5 125 40.8
PSO210G1692 Papaver somniferum HOM05D002758 ORTHO05D002885 1.8e-08 63.2 149 35.6
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 1.8e-08 63.2 138 36.2
Sed0025517 Sechium edule HOM05D002758 ORTHO05D002885 1.8e-08 63.2 130 46.2
Aqoxy7G03691 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 2.4e-08 62.8 148 39.2
Migut.I00776 Erythranthe guttata HOM05D002758 ORTHO05D002885 2.4e-08 62.8 142 36.6
Psat4g039800 Pisum sativum HOM05D002758 ORTHO05D002885 2.4e-08 62.8 131 42.0
Eucgr.C01181 Eucalyptus grandis HOM05D002758 ORTHO05D002885 3.1e-08 62.4 125 38.4
Phvul.005G177400 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 3.1e-08 62.4 135 43.0
SGA_v2.0_scaffold5G02683 Striga asiatica HOM05D002758 ORTHO05D002885 3.1e-08 62.4 139 36.7
VMungo1215G1272 Vigna mungo HOM05D002758 ORTHO05D002885 3.1e-08 62.4 132 38.6
Potri.006G069100 Populus trichocarpa HOM05D002758 ORTHO05D002885 4.0e-08 62.0 141 37.6
Peaxi162Scf00332g00756 Petunia axillaris HOM05D002758 ORTHO05D002885 5.2e-08 61.6 139 36.0
FAN19G2709 Fragaria x ananassa HOM05D002758 ORTHO05D002885 6.8e-08 61.2 146 37.0
Nitab4.5_0000373g0020 Nicotiana tabacum HOM05D002758 ORTHO05D002885 6.8e-08 61.2 138 37.7
Glyma.04G147200 Glycine max HOM05D002758 ORTHO05D002885 8.9e-08 60.8 136 36.8
Aqoxy7G02215 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 1.2e-07 60.5 134 35.8
arahy.Tifrunner.gnm1.ann1.4I3R3X Arachis hypogaea HOM05D002758 ORTHO05D002885 1.2e-07 60.5 137 37.2
Solyc03g116630.3 Solanum lycopersicum HOM05D002758 ORTHO05D002885 1.2e-07 60.5 146 41.8
CSS0022572 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 2.0e-07 59.7 151 35.1
Duzib168G0478 Durio zibethinus HOM05D002758 ORTHO05D002885 2.0e-07 59.7 136 44.1
Manes.14G132900 Manihot esculenta HOM05D002758 ORTHO05D002885 2.0e-07 59.7 135 43.0
Cpa.g.sc46.5 Carica papaya HOM05D002758 ORTHO05D002885 2.6e-07 59.3 179 31.8
Glyma.15G008300 Glycine max HOM05D002758 ORTHO05D002885 2.6e-07 59.3 133 43.6
Lalb_Chr13g0301821 Lupinus albus HOM05D002758 ORTHO05D002885 2.6e-07 59.3 126 36.5
Prupe.7G243900 Prunus persica HOM05D002758 ORTHO05D002885 2.6e-07 59.3 156 35.9
CiPaw.04G171600 Carya illinoinensis HOM05D002758 ORTHO05D002885 3.4e-07 58.9 128 39.8
ClCG06G011200 Citrullus lanatus HOM05D002758 ORTHO05D002885 3.4e-07 58.9 135 38.5
Oeu027807.1 Olea europaea HOM05D002758 ORTHO05D002885 3.4e-07 58.9 132 34.1
Sc08g0006550 Simmondsia chinensis HOM05D002758 ORTHO05D002885 3.4e-07 58.9 134 32.8
Ciclev10009903m.g Citrus clementina HOM05D002758 ORTHO05D002885 4.4e-07 58.5 126 36.5
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 4.4e-07 58.5 138 35.5
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 4.4e-07 58.5 143 37.1
RcHm_v2.0_Chr2g0135861 Rosa chinensis HOM05D002758 ORTHO05D002885 5.8e-07 58.2 136 36.8
Sc18g0000570 Simmondsia chinensis HOM05D002758 ORTHO05D002885 5.8e-07 58.2 143 39.2
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 7.6e-07 57.8 141 38.3
CiPaw.03G244800 Carya illinoinensis HOM05D002758 ORTHO05D002885 7.6e-07 57.8 142 40.1
Hund00526 Selenicereus undatus HOM05D002758 ORTHO05D002885 7.6e-07 57.8 151 34.4
MELO3C010338.2 Cucumis melo HOM05D002758 ORTHO05D002885 9.9e-07 57.4 130 43.1
Glyma.13G365000 Glycine max HOM05D002758 ORTHO05D002885 9.9e-07 57.4 134 36.6
Sed0016169 Sechium edule HOM05D002758 ORTHO05D002885 9.9e-07 57.4 143 32.9
Sc10g0005850 Simmondsia chinensis HOM05D002758 ORTHO05D002885 9.9e-07 57.4 145 33.8
Glyma.17G114300 Glycine max HOM05D002758 ORTHO05D002885 1.3e-06 57.0 131 34.4
Potri.018G131100 Populus trichocarpa HOM05D002758 ORTHO05D002885 1.3e-06 57.0 141 39.0
MSTRG.11135 Avicennia marina HOM05D002758 ORTHO05D002885 1.7e-06 56.6 148 36.5
FAN02G3379 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.7e-06 56.6 143 37.1
FAN14G2484 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.7e-06 56.6 143 37.1
Gohir.A05G016000 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.7e-06 56.6 133 39.8
Gohir.D05G017100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.7e-06 56.6 133 39.8
Gorai.009G017300 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.7e-06 56.6 133 39.8
FvH4_6g29910 Fragaria vesca HOM05D002758 ORTHO05D002885 2.9e-06 55.8 143 37.1
Lj3g0013801 Lotus japonicus HOM05D002758 ORTHO05D002885 2.9e-06 55.8 141 43.3
SalBow1G1971 Salvia bowleyana HOM05D002758 ORTHO05D002885 2.9e-06 55.8 132 40.2
TPR.G38648 Trifolium pratense HOM05D002758 ORTHO05D002885 2.9e-06 55.8 149 37.6
EL10Ac9g21912 Beta vulgaris HOM05D002758 ORTHO05D002885 3.8e-06 55.5 142 40.1
Hund06567 Selenicereus undatus HOM05D002758 ORTHO05D002885 3.8e-06 55.5 147 32.7
Glyma.13G166500 Glycine max HOM05D002758 ORTHO05D002885 4.9e-06 55.1 146 39.0
Hma1.2p1_1962F.1_g309240 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 4.9e-06 55.1 139 34.5
Hma1.2p1_3201F.1_g333909 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 4.9e-06 55.1 139 34.5
Lalb_Chr07g0178991 Lupinus albus HOM05D002758 ORTHO05D002885 4.9e-06 55.1 131 32.8
Sabra06G0051500 Salix brachista HOM05D002758 ORTHO05D002885 4.9e-06 55.1 147 36.7
FAN05G1526 Fragaria x ananassa HOM05D002758 ORTHO05D002885 6.4e-06 54.7 141 36.2
Oeu034104.1 Olea europaea HOM05D002758 ORTHO05D002885 6.4e-06 54.7 128 37.5
Phvul.010G155100 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 6.4e-06 54.7 142 34.5
Lsat_1_v5_gn_8_58521 Lactuca sativa HOM05D002758 ORTHO05D002885 8.4e-06 54.3 136 41.9
Medtr4g010530 Medicago truncatula HOM05D002758 ORTHO05D002885 8.4e-06 54.3 143 33.6
Psat5g302120 Pisum sativum HOM05D002758 ORTHO05D002885 8.4e-06 54.3 144 35.4
Rhsim01G0069000 Rhododendron simsii HOM05D002758 ORTHO05D002885 8.4e-06 54.3 146 34.9
Zm00001eb205750 Zea mays HOM05D022104 ORTHO05D002885 8.4e-06 54.3 149 33.6


User provided reference genes

Program Settings