Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25654 Brassica carinata HOM05D012263 ORTHO05D000900 4.4e-149 531.6 333 100.0
BcaB06g25659 Brassica carinata HOM05D012263 ORTHO05D000900 2.1e-138 496.1 333 95.2
BcaC05g29405 Brassica carinata HOM05D012263 ORTHO05D000900 8.2e-95 351.3 343 67.9
C05p57200 Brassica napus HOM05D012263 ORTHO05D000900 8.2e-95 351.3 343 67.9
BolC5t34381H Brassica oleracea HOM05D012263 ORTHO05D000900 8.2e-95 351.3 343 67.9
A05p38350 Brassica napus HOM05D012263 ORTHO05D000900 3.1e-86 322.8 343 72.0
BraA05t22625Z Brassica rapa HOM05D012263 ORTHO05D000900 4.8e-79 298.9 343 69.4
Sp3g09210 Schrenkiella parvula HOM05D012263 ORTHO05D000900 7.3e-67 258.5 358 54.7
AL3G22400 Arabidopsis lyrata HOM05D012263 ORTHO05D000900 4.0e-57 226.1 352 50.0
Thhalv10021043m.g Eutrema salsugineum HOM05D012263 ORTHO05D000900 1.5e-56 224.2 351 56.4
Carub.0003s1013 Capsella rubella HOM05D012263 ORTHO05D000900 1.6e-53 214.2 341 45.7
AT3G10880 Arabidopsis thaliana HOM05D012263 ORTHO05D000900 1.9e-51 207.2 338 50.6
CARHR085470 Cardamine hirsuta HOM05D012263 ORTHO05D000900 9.9e-24 115.2 114 59.6
BolC3t12808H Brassica oleracea HOM05D000592 ORTHO05D000900 1.5e-16 91.3 101 51.5
BraA03t09586Z Brassica rapa HOM05D000592 ORTHO05D000900 4.5e-16 89.7 101 50.5
A03p02220 Brassica napus HOM05D000592 ORTHO05D000900 1.3e-15 88.2 101 50.5
Sp6g37650 Schrenkiella parvula HOM05D000592 ORTHO05D000900 8.4e-15 85.5 108 49.1
CARHR208080 Cardamine hirsuta HOM05D000592 ORTHO05D000900 4.6e-13 79.7 109 45.9
Cpa.g.sc19.38 Carica papaya HOM05D000592 ORTHO05D000900 2.5e-11 73.9 101 42.6
THA.LOC104816506 Tarenaya hassleriana HOM05D000592 ORTHO05D000900 2.5e-11 73.9 85 52.9
Solyc03g095600.1 Solanum lycopersicum HOM05D000592 ORTHO05D000900 2.1e-10 70.9 86 45.3
PGSC0003DMG400022957 Solanum tuberosum HOM05D000592 ORTHO05D000900 4.8e-10 69.7 86 45.3
Migut.F01230 Erythranthe guttata HOM05D000592 ORTHO05D000900 6.2e-10 69.3 94 42.6
Sopen03g025550 Solanum pennellii HOM05D000592 ORTHO05D000900 6.2e-10 69.3 86 44.2
Nitab4.5_0005979g0020 Nicotiana tabacum HOM05D000592 ORTHO05D000900 8.2e-10 68.9 82 47.6
Peaxi162Scf00073g02222 Petunia axillaris HOM05D000592 ORTHO05D000900 1.1e-09 68.6 80 50.0
Hma1.2p1_0264F.1_g105920 Hydrangea macrophylla HOM05D000592 ORTHO05D000900 3.1e-09 67.0 101 40.6
Hma1.2p1_1805F.1_g303110 Hydrangea macrophylla HOM05D000592 ORTHO05D000900 3.1e-09 67.0 101 40.6
CAN.G1229.1 Capsicum annuum HOM05D000592 ORTHO05D000900 4.1e-09 66.6 79 48.1
Manes.07G141800 Manihot esculenta HOM05D000592 ORTHO05D000900 4.1e-09 66.6 101 39.6
Lj1g0022472 Lotus japonicus HOM05D000592 ORTHO05D000900 5.3e-09 66.2 104 38.5
Gorai.013G008900 Gossypium raimondii HOM05D000125 ORTHO05D000900 9.0e-09 65.5 103 37.9
Gorai.013G009500 Gossypium raimondii HOM05D000592 ORTHO05D000900 9.0e-09 65.5 86 44.2
PGSC0003DMG400001834 Solanum tuberosum HOM05D000592 ORTHO05D000900 1.2e-08 65.1 104 39.4
Sc10g0003080 Simmondsia chinensis HOM05D000592 ORTHO05D000900 1.5e-08 64.7 97 41.2
Solyc08g077680.3 Solanum lycopersicum HOM05D000592 ORTHO05D000900 1.5e-08 64.7 105 38.1
vmacro06905 Vaccinium macrocarpon HOM05D000592 ORTHO05D000900 1.5e-08 64.7 101 40.6
BcaC06g32227 Brassica carinata HOM05D000592 ORTHO05D000900 2.0e-08 64.3 59 59.3
C03p02560 Brassica napus HOM05D000592 ORTHO05D000900 2.0e-08 64.3 60 56.7
Hund13435 Selenicereus undatus HOM05D000592 ORTHO05D000900 2.0e-08 64.3 92 40.2
Atru.chr12.190 Acer truncatum HOM05D000592 ORTHO05D000900 2.6e-08 63.9 92 41.3
Gohir.D13G008266 Gossypium hirsutum HOM05D000592 ORTHO05D000900 2.6e-08 63.9 85 43.5
Gorai.013G008700 Gossypium raimondii HOM05D000592 ORTHO05D000900 2.6e-08 63.9 85 43.5
CSS0036597 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D000900 3.4e-08 63.5 90 43.3
CiPaw.13G062900 Carya illinoinensis HOM05D000592 ORTHO05D000900 3.4e-08 63.5 87 46.0
Dinv21860 Davidia involucrata HOM05D000592 ORTHO05D000900 3.4e-08 63.5 101 37.6
Sopen08g026190 Solanum pennellii HOM05D000592 ORTHO05D000900 3.4e-08 63.5 89 40.4
Thhalv10013570m.g Eutrema salsugineum HOM05D000592 ORTHO05D000900 7.6e-08 62.4 60 56.7
Gohir.A05G107500 Gossypium hirsutum HOM05D000592 ORTHO05D000900 7.6e-08 62.4 99 39.4
Gohir.D13G008700 Gossypium hirsutum HOM05D000592 ORTHO05D000900 1.3e-07 61.6 81 44.4
Medtr6g082800 Medicago truncatula HOM05D000592 ORTHO05D000900 1.3e-07 61.6 95 38.9
Medtr8g032930 Medicago truncatula HOM05D009393 ORTHO05D012382 1.3e-07 61.6 107 37.4
ECA248G1606 Erigeron canadensis HOM05D000592 ORTHO05D000900 1.7e-07 61.2 110 32.7
Gohir.D13G008332 Gossypium hirsutum HOM05D000125 ORTHO05D000900 1.7e-07 61.2 102 36.3
Lsat_1_v5_gn_2_126640 Lactuca sativa HOM05D016672 ORTHO05D000900 1.7e-07 61.2 116 38.8
GSVIVG01032654001 Vitis vinifera HOM05D000592 ORTHO05D000900 1.7e-07 61.2 81 44.4
Aa31LG11G6030 Aethionema arabicum HOM05D000592 ORTHO05D000900 2.2e-07 60.8 62 51.6
Ca_25477_v3 Cicer arietinum L. HOM05D000592 ORTHO05D000900 2.2e-07 60.8 103 38.8
Ca_29869_v3 Cicer arietinum L. HOM05D000592 ORTHO05D000900 2.2e-07 60.8 103 38.8
Gohir.D05G107700 Gossypium hirsutum HOM05D000592 ORTHO05D000900 2.2e-07 60.8 99 38.4
BcaB01g05720 Brassica carinata HOM05D000592 ORTHO05D000900 2.9e-07 60.5 60 53.3
CSS0047619 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D000900 2.9e-07 60.5 94 39.4
Medtr3g093770 Medicago truncatula HOM05D009393 ORTHO05D000900 2.9e-07 60.5 96 38.5
Ciclev10000625m.g Citrus clementina HOM05D000592 ORTHO05D000900 3.8e-07 60.1 98 36.7
Dinv28735 Davidia involucrata HOM05D000592 ORTHO05D000900 3.8e-07 60.1 90 42.2
Psat1g034400 Pisum sativum HOM05D009393 ORTHO05D000900 3.8e-07 60.1 82 45.1
Hund28036 Selenicereus undatus HOM05D000592 ORTHO05D000900 3.8e-07 60.1 91 38.5
Hund28038 Selenicereus undatus HOM05D000592 ORTHO05D000900 3.8e-07 60.1 91 38.5
Carub.0006s0411 Capsella rubella HOM05D000592 ORTHO05D000900 5.0e-07 59.7 38 76.3
ClCG11G005550 Citrullus lanatus HOM05D000592 ORTHO05D000900 5.0e-07 59.7 101 36.6
MD07G1236600 Malus domestica HOM05D000592 ORTHO05D000900 5.0e-07 59.7 97 38.1
Rhsim13G0058700 Rhododendron simsii HOM05D000592 ORTHO05D000900 5.0e-07 59.7 89 40.4
vmacro02870 Vaccinium macrocarpon HOM05D000592 ORTHO05D000900 5.0e-07 59.7 89 39.3
AL6G15020 Arabidopsis lyrata HOM05D000592 ORTHO05D000900 6.5e-07 59.3 37 78.4
FAN06G2529 Fragaria x ananassa HOM05D000592 ORTHO05D000900 6.5e-07 59.3 99 37.4
PSO302G0277 Papaver somniferum HOM05D031600 ORTHO05D000900 6.5e-07 59.3 89 41.6
RcHm_v2.0_Chr1g0372621 Rosa chinensis HOM05D000592 ORTHO05D000900 6.5e-07 59.3 97 39.2
TPR.G24810 Trifolium pratense HOM05D009393 ORTHO05D000900 6.5e-07 59.3 96 39.6
FvH4_7g26161 Fragaria vesca HOM05D000592 ORTHO05D000900 8.4e-07 58.9 99 37.4
Oeu011387.1 Olea europaea HOM05D000592 ORTHO05D000900 8.4e-07 58.9 82 39.0
Psat5g069440 Pisum sativum HOM05D009393 ORTHO05D012382 8.4e-07 58.9 200 29.5
AT5G05180 Arabidopsis thaliana HOM05D000592 ORTHO05D000900 1.1e-06 58.5 37 75.7
Cc00_g18900 Coffea canephora HOM05D000592 ORTHO05D000900 1.1e-06 58.5 99 34.3
Gorai.009G111800 Gossypium raimondii HOM05D000592 ORTHO05D000900 1.1e-06 58.5 89 39.3
Prupe.2G266000 Prunus persica HOM05D000592 ORTHO05D000900 1.1e-06 58.5 90 40.0
Cpa.g.sc2.288 Carica papaya HOM05D000592 ORTHO05D000900 1.4e-06 58.2 90 37.8
MD00G1193100 Malus domestica HOM05D000592 ORTHO05D000900 1.4e-06 58.2 97 37.1
MD01G1170000 Malus domestica HOM05D000592 ORTHO05D000900 1.4e-06 58.2 97 38.1
Manes.10G003500 Manihot esculenta HOM05D000592 ORTHO05D000900 1.4e-06 58.2 83 43.4
MD00G1192700 Malus domestica HOM05D000592 ORTHO05D000900 1.9e-06 57.8 97 37.1
Manes.02G210800 Manihot esculenta HOM05D000592 ORTHO05D000900 1.9e-06 57.8 97 36.1
PSO302G0198 Papaver somniferum HOM05D031600 ORTHO05D000900 1.9e-06 57.8 101 36.6
PGR102G2955 Punica granatum HOM05D000592 ORTHO05D000900 1.9e-06 57.8 92 40.2
arahy.Tifrunner.gnm1.ann1.18PYAU Arachis hypogaea HOM05D000592 ORTHO05D000900 2.5e-06 57.4 91 36.3
BcaNung05614 Brassica carinata HOM05D012263 ORTHO05D000900 2.5e-06 57.4 42 69.0
Os05g0168800 Oryza sativa ssp. japonica HOM05D000592 ORTHO05D000900 2.5e-06 57.4 95 36.8
Oeu015578.1 Olea europaea HOM05D000592 ORTHO05D000900 3.2e-06 57.0 98 32.7
QL08p065113 Quercus lobata HOM05D000592 ORTHO05D000900 3.2e-06 57.0 85 41.2
Cc02_g05180 Coffea canephora HOM05D000592 ORTHO05D000900 4.2e-06 56.6 101 35.6
ECA238G3344 Erigeron canadensis HOM05D016672 ORTHO05D000900 4.2e-06 56.6 104 37.5
FAN01G3120 Fragaria x ananassa HOM05D000592 ORTHO05D000900 4.2e-06 56.6 99 35.4
Lj6g0013783 Lotus japonicus HOM05D000592 ORTHO05D000900 4.2e-06 56.6 90 42.2
Medtr8g032900 Medicago truncatula HOM05D009393 ORTHO05D012382 4.2e-06 56.6 120 35.8
Rhsim03G0153900 Rhododendron simsii HOM05D000592 ORTHO05D000900 4.2e-06 56.6 87 41.4
VMungo1309G1617 Vigna mungo HOM05D000592 ORTHO05D000900 4.2e-06 56.6 87 36.8
Zm00001eb281940 Zea mays HOM05D000592 ORTHO05D000900 4.2e-06 56.6 99 35.4
Actinidia11628 Actinidia chinensis HOM05D000592 ORTHO05D000900 5.5e-06 56.2 90 41.1
CDE12G0881 Ceratophyllum demersum HOM05D000592 ORTHO05D000900 5.5e-06 56.2 78 38.5
Glyma.04G223600 Glycine max HOM05D009393 ORTHO05D000900 5.5e-06 56.2 59 47.5
Hma1.2p1_0161F.1_g072140 Hydrangea macrophylla HOM05D000592 ORTHO05D000900 5.5e-06 56.2 87 41.4
MD07G1236900 Malus domestica HOM05D000592 ORTHO05D000900 5.5e-06 56.2 97 36.1
SGA_v2.0_scaffold20G09285 Striga asiatica HOM05D000592 ORTHO05D000900 5.5e-06 56.2 115 31.3
TAR633G2344 Trochodendron aralioides HOM05D000592 ORTHO05D000900 5.5e-06 56.2 86 39.5
CDE07G1883 Ceratophyllum demersum HOM05D000592 ORTHO05D000900 7.2e-06 55.8 84 40.5
FAN10G3566 Fragaria x ananassa HOM05D000592 ORTHO05D000900 7.2e-06 55.8 99 36.4
Nn5g26826 Nelumbo nucifera HOM05D000592 ORTHO05D000900 7.2e-06 55.8 90 38.9
Oeu027193.1 Olea europaea HOM05D000592 ORTHO05D000900 7.2e-06 55.8 100 39.0
Potri.019G131000 Populus trichocarpa HOM05D000592 ORTHO05D000900 7.2e-06 55.8 97 34.0
TWI53G1016 Tripterygium wilfordii HOM05D000592 ORTHO05D000900 7.2e-06 55.8 92 40.2
unitig_26.g10224 Utricularia gibba HOM05D000592 ORTHO05D000900 7.2e-06 55.8 91 33.0
Atru.chr10.2335 Acer truncatum HOM05D000592 ORTHO05D000900 9.3e-06 55.5 83 41.0
EL10Ac2g02670 Beta vulgaris HOM05D000592 ORTHO05D000900 9.3e-06 55.5 92 39.1
Dinv12285 Davidia involucrata HOM05D000592 ORTHO05D000900 9.3e-06 55.5 87 41.4
Lj1P969T46 Lonicera japonica HOM05D000592 ORTHO05D000900 9.3e-06 55.5 93 43.0
PSO017G2726 Papaver somniferum HOM05D000592 ORTHO05D000900 9.3e-06 55.5 92 37.0
PSO017G4207 Papaver somniferum HOM05D000592 ORTHO05D000900 9.3e-06 55.5 92 37.0
Phvul.008G246300 Phaseolus vulgaris HOM05D000592 ORTHO05D000900 9.3e-06 55.5 78 41.0


User provided reference genes

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