Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 9.1e-195 683.3 333 100.0
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 3.5e-146 521.9 294 88.4
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 8.7e-145 517.3 294 87.1
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 8.7e-145 517.3 294 87.1
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 2.5e-144 515.8 297 87.5
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 3.3e-136 488.8 291 84.5
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 3.7e-135 485.3 291 84.2
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 5.1e-129 464.9 292 79.8
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 5.3e-126 454.9 296 78.7
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 2.6e-125 452.6 297 78.5
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 1.4e-118 430.3 274 78.8
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 3.1e-118 429.1 291 79.0
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.5e-112 410.2 263 76.8
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 5.7e-112 408.3 287 72.1
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 8.8e-97 357.8 273 65.9
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.0e-93 346.7 226 77.4
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 4.5e-93 345.5 282 67.0
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 1.3e-92 344.0 288 60.8
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.6e-90 337.0 277 66.4
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.8e-89 333.6 290 58.3
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 4.0e-89 332.4 290 58.3
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 5.2e-89 332.0 333 52.9
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 1.2e-88 330.9 284 58.8
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.5e-88 330.5 290 57.9
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 7.5e-88 328.2 283 58.7
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 7.5e-88 328.2 286 57.7
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 7.5e-88 328.2 283 57.6
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 9.7e-88 327.8 290 58.3
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 9.7e-88 327.8 294 58.8
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 3.7e-87 325.9 280 64.6
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 1.1e-86 324.3 286 56.6
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 2.4e-86 323.2 301 52.5
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 2.4e-86 323.2 301 52.5
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 3.1e-86 322.8 290 57.6
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 1.2e-85 320.9 294 56.8
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 1.6e-85 320.5 280 58.6
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 2.7e-85 319.7 301 55.1
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 3.5e-85 319.3 286 56.6
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 4.5e-85 318.9 292 56.8
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 1.3e-84 317.4 279 61.3
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 1.7e-84 317.0 286 57.7
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 2.2e-84 316.6 306 53.9
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 2.9e-84 316.2 290 57.2
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 2.9e-84 316.2 286 54.5
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 5.0e-84 315.5 286 56.6
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 6.5e-84 315.1 290 56.2
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 8.5e-84 314.7 294 55.1
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 8.5e-84 314.7 284 56.3
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 1.1e-83 314.3 303 51.8
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 1.5e-83 313.9 273 57.9
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 3.2e-83 312.8 285 54.7
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 4.2e-83 312.4 310 54.2
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 7.2e-83 311.6 306 53.9
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 2.7e-82 309.7 283 56.2
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 4.7e-82 308.9 281 58.7
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 4.7e-82 308.9 286 54.9
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 8.0e-82 308.1 281 55.5
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.0e-81 307.8 299 53.2
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 1.8e-81 307.0 295 54.2
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 2.3e-81 306.6 278 56.5
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 4.0e-81 305.8 303 53.5
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 5.2e-81 305.4 327 51.7
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 5.2e-81 305.4 300 53.7
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 7.5e-80 301.6 284 52.5
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 9.8e-80 301.2 279 57.0
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 9.8e-80 301.2 284 52.8
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 1.3e-79 300.8 274 55.5
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.2e-79 300.1 277 57.4
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 2.8e-79 299.7 298 54.0
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 3.7e-79 299.3 279 55.6
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 4.8e-79 298.9 192 76.6
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 4.8e-79 298.9 276 56.9
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.8e-79 298.9 278 55.8
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.1e-78 297.7 278 55.8
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 1.1e-78 297.7 307 51.8
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 1.8e-78 297.0 273 55.7
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 1.8e-78 297.0 314 51.0
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 2.4e-78 296.6 285 55.4
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 5.4e-78 295.4 279 60.2
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 7.0e-78 295.0 284 54.6
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 7.0e-78 295.0 284 54.6
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 1.6e-77 293.9 276 54.0
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 2.0e-77 293.5 288 53.5
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 3.5e-77 292.7 265 57.4
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 2.3e-76 290.0 288 53.1
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 5.0e-76 288.9 283 51.2
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 5.0e-76 288.9 289 52.9
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 8.6e-76 288.1 247 58.3
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 3.3e-75 286.2 277 58.5
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 2.3e-73 280.0 295 52.5
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 5.7e-72 275.4 350 45.1
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 2.8e-71 273.1 279 52.7
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 3.7e-71 272.7 275 49.5
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 1.4e-70 270.8 273 50.9
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 1.2e-69 267.7 217 63.1
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 1.6e-69 267.3 235 57.9
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 2.3e-68 263.5 281 48.4
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 2.3e-68 263.5 284 50.7
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 6.6e-68 261.9 290 49.3
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.5e-67 260.8 288 49.3
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 1.5e-67 260.8 255 54.1
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 5.6e-67 258.8 193 70.5
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 5.6e-67 258.8 266 51.1
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 7.3e-67 258.5 261 51.0
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.0e-65 254.6 288 48.6
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 2.3e-65 253.4 282 50.0
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.5e-64 250.8 294 46.6
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 1.3e-60 237.7 210 55.7
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 9.5e-59 231.5 210 54.3
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 1.6e-58 230.7 212 54.7
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.6e-58 230.7 228 53.5
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 1.1e-57 228.0 212 54.2
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 6.8e-57 225.3 310 42.6
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 1.1e-54 218.0 289 45.7
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 4.1e-54 216.1 269 43.9
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 6.6e-52 208.8 258 51.2
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 3.6e-50 203.0 223 51.6
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 1.4e-49 201.1 288 41.0
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 9.2e-46 188.3 207 47.3
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 3.5e-45 186.4 272 40.1
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 6.0e-45 185.7 298 37.6
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 1.0e-44 184.9 295 38.0
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 5.1e-44 182.6 173 54.3
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 1.5e-43 181.0 292 38.4
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 1.1e-38 164.9 147 55.1
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 3.2e-38 163.3 160 53.8
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 9.3e-38 161.8 212 44.8
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 1.2e-37 161.4 165 48.5
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 3.6e-34 149.8 128 56.2
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 1.1e-33 148.3 92 78.3
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 3.1e-33 146.7 100 73.0
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 1.3e-31 141.4 167 47.9
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 1.9e-30 137.5 173 46.8
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 7.3e-27 125.6 107 60.7
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.6e-26 123.2 107 60.7
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 9.0e-25 118.6 118 51.7
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 4.9e-23 112.8 58 89.7
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 4.9e-23 112.8 58 89.7
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 4.9e-23 112.8 248 35.1
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 1.9e-19 100.9 108 50.9
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 2.8e-18 97.1 344 27.0
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 6.9e-17 92.4 95 48.4
BcaC08g45564 Brassica carinata HOM05D033707 ORTHO05D039611 2.6e-16 90.5 45 91.1
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 1.6e-13 81.3 83 54.2
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 6.7e-12 75.9 105 42.9
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 8.7e-12 75.5 58 65.5
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 1.9e-11 74.3 216 29.2
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 2.5e-11 73.9 59 57.6
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 6.2e-10 69.3 237 26.2
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 3.1e-09 67.0 212 26.4
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 6.9e-09 65.9 228 25.4
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 2.0e-08 64.3 240 25.0
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 5.8e-08 62.8 216 25.9
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 7.6e-08 62.4 152 30.9
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 1.3e-07 61.6 235 24.3
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 1.7e-07 61.2 215 27.0
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 2.9e-07 60.5 212 26.4
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 3.8e-07 60.1 210 24.8
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 6.5e-07 59.3 216 25.5
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 8.4e-07 58.9 250 24.8
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 8.4e-07 58.9 210 23.8
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 8.4e-07 58.9 223 26.0
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 1.1e-06 58.5 235 23.8
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 1.1e-06 58.5 141 28.4
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.4e-06 58.2 215 25.1
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.9e-06 57.8 215 26.5
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 1.9e-06 57.8 218 24.8
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 2.5e-06 57.4 213 24.9
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 3.2e-06 57.0 162 27.8
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 3.2e-06 57.0 46 58.7
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 5.5e-06 56.2 172 26.2
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 5.5e-06 56.2 212 25.9
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 7.2e-06 55.8 216 24.1
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 7.2e-06 55.8 221 27.1
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 9.3e-06 55.5 226 23.5
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 9.3e-06 55.5 226 23.5
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 9.3e-06 55.5 168 25.6
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 9.3e-06 55.5 196 26.0


User provided reference genes

Program Settings