Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 4.4e-32 140.6 67 100.0
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 4.4e-32 140.6 67 100.0
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 4.5e-24 114.0 58 89.7
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 4.5e-24 114.0 58 89.7
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 5.8e-24 113.6 58 87.9
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 9.9e-24 112.8 58 89.7
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 9.9e-24 112.8 58 87.9
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.7e-23 112.1 61 88.5
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 8.4e-23 109.8 61 85.2
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 3.2e-22 107.8 61 83.6
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 4.2e-22 107.5 61 83.6
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 9.3e-22 106.3 61 82.0
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 4.6e-21 104.0 61 82.0
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 3.0e-20 101.3 61 77.0
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 6.7e-20 100.1 60 75.0
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 4.3e-19 97.4 60 78.3
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 1.2e-16 89.4 61 68.9
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 2.6e-16 88.2 61 68.9
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 4.5e-16 87.4 62 69.4
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 7.6e-16 86.7 59 78.0
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 1.3e-15 85.9 54 74.1
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 1.7e-15 85.5 61 68.9
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.7e-15 85.5 61 68.9
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 2.9e-15 84.7 61 68.9
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 3.8e-15 84.3 61 67.2
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 3.8e-15 84.3 61 67.2
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 3.8e-15 84.3 61 67.2
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 3.8e-15 84.3 61 63.9
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 3.8e-15 84.3 61 67.2
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 3.8e-15 84.3 61 68.9
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 4.9e-15 84.0 61 65.6
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 6.4e-15 83.6 65 63.1
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 6.4e-15 83.6 61 67.2
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.4e-14 82.4 60 68.3
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.9e-14 82.0 60 68.3
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 1.9e-14 82.0 61 63.9
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 2.4e-14 81.6 70 65.7
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 2.4e-14 81.6 61 65.6
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 3.2e-14 81.3 61 63.9
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 3.2e-14 81.3 64 62.5
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 4.2e-14 80.9 61 63.9
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.2e-14 80.9 58 69.0
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 7.1e-14 80.1 46 80.4
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 7.1e-14 80.1 61 59.0
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 9.3e-14 79.7 61 63.9
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 9.3e-14 79.7 52 76.9
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 9.3e-14 79.7 52 76.9
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.2e-13 79.3 52 76.9
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 1.2e-13 79.3 50 80.0
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 1.6e-13 79.0 47 80.9
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 1.6e-13 79.0 61 62.3
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 1.6e-13 79.0 62 62.9
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 2.1e-13 78.6 62 62.9
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 2.7e-13 78.2 61 63.9
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 3.5e-13 77.8 51 72.5
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 4.6e-13 77.4 60 68.3
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 4.6e-13 77.4 50 78.0
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.6e-13 77.4 50 78.0
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 4.6e-13 77.4 57 61.4
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 4.6e-13 77.4 49 73.5
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 4.6e-13 77.4 61 57.4
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 6.0e-13 77.0 50 68.0
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 6.0e-13 77.0 50 68.0
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 6.0e-13 77.0 61 60.7
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 7.9e-13 76.6 61 60.7
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 7.9e-13 76.6 61 65.6
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 7.9e-13 76.6 60 70.0
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 7.9e-13 76.6 49 73.5
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 1.3e-12 75.9 61 59.0
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 3.9e-12 74.3 56 60.7
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 3.9e-12 74.3 48 68.8
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 5.1e-12 73.9 56 66.1
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 5.1e-12 73.9 61 62.3
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 6.7e-12 73.6 48 70.8
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 6.7e-12 73.6 48 66.7
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 8.7e-12 73.2 50 66.0
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 8.7e-12 73.2 51 68.6
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 1.1e-11 72.8 63 65.1
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 1.1e-11 72.8 53 73.6
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.1e-11 72.8 47 70.2
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 1.5e-11 72.4 63 61.9
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 1.5e-11 72.4 48 66.7
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 1.9e-11 72.0 54 59.3
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 1.9e-11 72.0 57 59.6
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 2.5e-11 71.6 61 60.7
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 3.3e-11 71.2 54 63.0
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 5.6e-11 70.5 70 57.1
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 7.4e-11 70.1 46 65.2
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 7.4e-11 70.1 61 55.7
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 1.3e-10 69.3 54 59.3
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 1.3e-10 69.3 47 68.1
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 1.6e-10 68.9 61 55.7
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 1.8e-09 65.5 63 57.1
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 1.8e-09 65.5 61 54.1
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 2.4e-09 65.1 48 60.4
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 2.4e-09 65.1 49 59.2
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 3.1e-09 64.7 50 62.0
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 4.0e-09 64.3 47 63.8
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 9.0e-09 63.2 47 63.8
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 9.0e-09 63.2 51 58.8
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 1.2e-08 62.8 61 52.5
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 1.5e-08 62.4 48 58.3
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.5e-08 62.4 51 54.9
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 1.5e-08 62.4 51 56.9
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 5.8e-08 60.5 46 63.0
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 5.8e-08 60.5 61 54.1
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 5.8e-08 60.5 76 47.4
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 7.6e-08 60.1 61 54.1
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 7.6e-08 60.1 61 54.1
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.0e-07 59.7 56 58.9
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 2.2e-07 58.5 48 66.7
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 2.2e-07 58.5 49 53.1
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 6.5e-07 57.0 63 49.2
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 8.4e-07 56.6 36 69.4
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 8.4e-07 56.6 47 55.3
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 5.5e-06 53.9 48 56.2


User provided reference genes

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