Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25602 Brassica carinata HOM05D006689 ORTHO05D008349 4.2e-181 637.9 317 100.0
C05p56320 Brassica napus HOM05D006689 ORTHO05D008349 1.3e-158 563.1 317 89.9
A05p37720 Brassica napus HOM05D006689 ORTHO05D008349 2.1e-156 555.8 317 89.0
BraA05t22567Z Brassica rapa HOM05D006689 ORTHO05D008349 1.8e-155 552.7 317 88.3
Sp3g09850 Schrenkiella parvula HOM05D006689 ORTHO05D008349 9.1e-152 540.4 316 85.8
Thhalv10021180m.g Eutrema salsugineum HOM05D006689 ORTHO05D008349 3.5e-151 538.5 317 85.5
BcaB04g18654 Brassica carinata HOM05D006689 ORTHO05D008349 7.2e-149 530.8 317 83.9
BolC5t34296H Brassica oleracea HOM05D006689 ORTHO05D008349 6.1e-148 527.7 292 90.4
BcaC05g29349 Brassica carinata HOM05D006689 ORTHO05D008349 2.0e-146 522.7 288 91.0
AL3G23170 Arabidopsis lyrata HOM05D006689 ORTHO05D008349 2.8e-145 518.8 317 81.1
A03p37220 Brassica napus HOM05D006689 ORTHO05D008349 4.5e-143 511.5 311 83.0
CARHR086170 Cardamine hirsuta HOM05D006689 ORTHO05D008349 4.5e-143 511.5 315 81.6
BcaC01g04099 Brassica carinata HOM05D006689 ORTHO05D008349 2.7e-140 502.3 311 81.7
Carub.0003s1094 Capsella rubella HOM05D006689 ORTHO05D008349 1.4e-139 500.0 317 79.5
BraA03t12881Z Brassica rapa HOM05D006689 ORTHO05D008349 3.0e-139 498.8 305 83.0
C03p45070 Brassica napus HOM05D006689 ORTHO05D008349 5.7e-138 494.6 311 80.7
Aa31LG3G5030 Aethionema arabicum HOM05D006689 ORTHO05D008349 1.8e-136 489.6 317 77.9
AT3G11620 Arabidopsis thaliana HOM05D006689 ORTHO05D008349 8.6e-134 480.7 292 81.8
QL07p037495 Quercus lobata HOM05D006689 ORTHO05D008349 5.6e-109 398.3 309 64.7
Potri.016G072700 Populus trichocarpa HOM05D006689 ORTHO05D008349 2.1e-108 396.4 307 64.2
TWI74G1155 Tripterygium wilfordii HOM05D006689 ORTHO05D008349 2.8e-108 396.0 304 62.8
Atru.chr8.1397 Acer truncatum HOM05D006689 ORTHO05D008349 5.2e-107 391.7 307 63.2
PGR004G2039 Punica granatum HOM05D006689 ORTHO05D008349 2.0e-106 389.8 294 62.9
Duzib106G1273 Durio zibethinus HOM05D006689 ORTHO05D008349 4.4e-106 388.7 310 60.6
Cfa016668 Carpinus fangiana HOM05D006689 ORTHO05D008349 2.2e-105 386.3 305 63.0
TAR633G1471 Trochodendron aralioides HOM05D006689 ORTHO05D008349 2.2e-105 386.3 311 58.5
Psat3g030240 Pisum sativum HOM05D006689 ORTHO05D008349 3.8e-105 385.6 310 59.4
GSVIVG01033928001 Vitis vinifera HOM05D006689 ORTHO05D008349 1.9e-104 383.3 309 58.3
MD14G1035800 Malus domestica HOM05D006689 ORTHO05D008349 3.2e-104 382.5 308 60.7
Lalb_Chr20g0111471 Lupinus albus HOM05D006689 ORTHO05D008349 9.2e-104 380.9 311 59.8
TPR.G23318 Trifolium pratense HOM05D006689 ORTHO05D008349 1.2e-103 380.6 311 60.5
MD12G1034600 Malus domestica HOM05D006689 ORTHO05D008349 1.6e-103 380.2 285 66.0
Lj1g0003895 Lotus japonicus HOM05D006689 ORTHO05D008349 2.7e-103 379.4 312 59.3
FvH4_6g19910 Fragaria vesca HOM05D006689 ORTHO05D008349 7.8e-103 377.9 302 60.3
QL07p037513 Quercus lobata HOM05D006689 ORTHO05D008349 7.8e-103 377.9 303 60.7
Aqoxy4G02685 Aquilegia oxysepala HOM05D006689 ORTHO05D008349 1.0e-102 377.5 309 59.5
Eucgr.A02606 Eucalyptus grandis HOM05D006689 ORTHO05D008349 1.3e-102 377.1 294 60.5
Gorai.009G398000 Gossypium raimondii HOM05D006689 ORTHO05D008349 1.5e-101 373.6 306 58.5
CSS0035173 Camellia sinensis var. sinensis HOM05D006689 ORTHO05D008349 5.6e-101 371.7 299 59.5
Cpa.g.sc104.62 Carica papaya HOM05D006689 ORTHO05D008349 5.6e-101 371.7 309 59.2
CANSAT64G2446 Cannabis sativa HOM05D006689 ORTHO05D008349 9.6e-101 370.9 307 58.3
Lalb_Chr01g0017911 Lupinus albus HOM05D006689 ORTHO05D008349 9.6e-101 370.9 305 59.7
CiPaw.09G018700 Carya illinoinensis HOM05D006689 ORTHO05D008349 2.1e-100 369.8 306 60.1
Prupe.7G098300 Prunus persica HOM05D006689 ORTHO05D008349 2.8e-100 369.4 310 60.3
Actinidia32058 Actinidia chinensis HOM05D006689 ORTHO05D008349 3.6e-100 369.0 300 58.3
FAN14G3242 Fragaria x ananassa HOM05D006689 ORTHO05D008349 4.7e-100 368.6 302 59.3
Sopen01g003330 Solanum pennellii HOM05D006689 ORTHO05D008349 4.7e-100 368.6 315 56.8
FAN02G4476 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.4e-99 367.1 302 59.3
Cc06_g06350 Coffea canephora HOM05D006689 ORTHO05D008349 6.9e-99 364.8 299 57.2
Hma1.2p1_0064F.1_g034840 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 6.9e-99 364.8 300 58.0
FAN05G1672 Fragaria x ananassa HOM05D006689 ORTHO05D008349 8.9e-99 364.4 302 58.6
Solyc01g007790.4 Solanum lycopersicum HOM05D006689 ORTHO05D008349 1.5e-98 363.6 315 56.2
Nn6g34760 Nelumbo nucifera HOM05D006689 ORTHO05D008349 9.9e-98 360.9 311 56.9
Ciclev10011965m.g Citrus clementina HOM05D006689 ORTHO05D008349 5.4e-96 355.1 326 55.2
PSO384G4437 Papaver somniferum HOM05D006689 ORTHO05D008349 7.1e-96 354.8 305 54.1
Sc07g0005680 Simmondsia chinensis HOM05D006689 ORTHO05D008349 7.1e-96 354.8 306 56.9
PSO339G4581 Papaver somniferum HOM05D006689 ORTHO05D008349 7.8e-95 351.3 305 53.8
CsaV3_6G040970 Cucumis sativus L. HOM05D006689 ORTHO05D008349 1.1e-93 347.4 303 52.8
MBI17_g00993_MAGBIO Magnolia biondii HOM05D006689 ORTHO05D008349 3.6e-92 342.4 305 55.4
DCAR_013430 Daucus carota HOM05D006689 ORTHO05D008349 6.2e-92 341.7 308 55.8
Oeu017715.1 Olea europaea HOM05D006689 ORTHO05D008349 9.9e-90 334.3 304 54.9
ECA233G1524 Erigeron canadensis HOM05D006689 ORTHO05D008349 1.4e-88 330.5 282 55.0
HanXRQChr13g0398201 Helianthus annuus HOM05D006689 ORTHO05D008349 1.9e-88 330.1 307 52.1
Zm00001eb362600 Zea mays HOM05D006689 ORTHO05D008349 2.4e-88 329.7 300 54.3
HPP92_023075 Vanilla planifolia HOM05D006689 ORTHO05D008349 2.7e-87 326.2 309 53.7
FAN09G0196 Fragaria x ananassa HOM05D006689 ORTHO05D008349 4.6e-87 325.5 394 45.2
Haze_19679 Corylus avellana HOM05D006689 ORTHO05D008349 6.0e-87 325.1 346 52.3
SEGI_26711 Sequoiadendron giganteum HOM05D006689 ORTHO05D008349 1.8e-86 323.6 298 53.0
Phvul.001G194040 Phaseolus vulgaris HOM05D006689 ORTHO05D008349 5.1e-86 322.0 270 58.9
Rhsim03G0067100 Rhododendron simsii HOM05D006689 ORTHO05D008349 1.5e-85 320.5 438 41.6
arahy.Tifrunner.gnm1.ann1.YAPI8V Arachis hypogaea HOM05D006689 ORTHO05D008349 2.5e-85 319.7 311 51.8
Nitab4.5_0000665g0040 Nicotiana tabacum HOM05D006689 ORTHO05D008349 5.6e-85 318.5 300 53.3
Sabra16G0075500 Salix brachista HOM05D006689 ORTHO05D008349 1.5e-82 310.5 350 49.7
Peaxi162Scf00419g00069 Petunia axillaris HOM05D006689 ORTHO05D008349 2.0e-82 310.1 293 53.2
Sed0011891 Sechium edule HOM05D006689 ORTHO05D008349 3.4e-82 309.3 265 55.1
ClCG04G010350 Citrullus lanatus HOM05D006689 ORTHO05D008349 4.5e-82 308.9 310 48.7
Medtr7g105800 Medicago truncatula HOM05D006689 ORTHO05D008349 1.7e-81 307.0 226 64.2
FAN05G0890 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.0e-78 297.7 269 55.4
ATR0772G132 Amborella trichopoda HOM05D006689 ORTHO05D008349 1.1e-77 294.3 260 55.0
Gohir.D04G095300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 1.1e-77 294.3 232 60.3
Lsat_1_v5_gn_6_35180 Lactuca sativa HOM05D006689 ORTHO05D008349 1.5e-77 293.9 283 49.8
RcHm_v2.0_Chr3g0475311 Rosa chinensis HOM05D006689 ORTHO05D008349 5.6e-77 292.0 225 61.8
Pp3c13_7330 Physcomitrium patens HOM05D006689 ORTHO05D008349 9.6e-77 291.2 299 49.5
Nitab4.5_0000020g0370 Nicotiana tabacum HOM05D006689 ORTHO05D008349 1.0e-73 281.2 225 59.1
Migut.L01819 Erythranthe guttata HOM05D006689 ORTHO05D008349 2.2e-73 280.0 227 58.1
arahy.Tifrunner.gnm1.ann1.ZIE5B9 Arachis hypogaea HOM05D006689 ORTHO05D008349 3.8e-73 279.3 311 46.9
Manes.09G048600 Manihot esculenta HOM05D006689 ORTHO05D008349 5.7e-69 265.4 235 60.0
CAN.G574.36 Capsicum annuum HOM05D006689 ORTHO05D008349 1.6e-68 263.8 211 59.7
SMO272G0021 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 6.1e-63 245.4 288 43.8
SalBow5G2063 Salvia bowleyana HOM05D006689 ORTHO05D008349 6.7e-62 241.9 301 43.9
Thecc.05G100700 Theobroma cacao HOM05D006689 ORTHO05D008349 1.4e-59 234.2 207 55.6
BolC3t16769H Brassica oleracea HOM05D006689 ORTHO05D008349 6.9e-59 231.9 127 91.3
SMO165G0131 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 2.2e-57 226.9 313 39.6
Hma1.2p1_0064F.1_g034850 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 7.9e-55 218.4 204 53.4
CDE02G4301 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 4.4e-53 212.6 172 60.5
MELO3C024575.2 Cucumis melo HOM05D006689 ORTHO05D008349 1.3e-49 201.1 308 38.6
Glyma.03G200300 Glycine max HOM05D006689 ORTHO05D008349 1.7e-49 200.7 144 68.8
AUR62037035 Chenopodium quinoa HOM05D006689 ORTHO05D008349 3.2e-48 196.4 193 52.8
EL10Ac7g16816 Beta vulgaris HOM05D006689 ORTHO05D008349 5.7e-45 185.7 142 62.7
AUR62006266 Chenopodium quinoa HOM05D006689 ORTHO05D008349 1.7e-44 184.1 193 49.7
PGSC0003DMG400016416 Solanum tuberosum HOM05D006689 ORTHO05D008349 4.8e-44 182.6 148 57.4
Gohir.A04G061300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 3.5e-42 176.4 102 74.5
Hund19873 Selenicereus undatus HOM05D006689 ORTHO05D008349 4.5e-42 176.0 280 38.9
vmacro07460 Vaccinium macrocarpon HOM05D006689 ORTHO05D008349 8.5e-41 171.8 407 31.2
Aa31LG3G5020 Aethionema arabicum HOM05D006689 ORTHO05D008349 8.8e-38 161.8 79 93.7
unitig_22.g6018 Utricularia gibba HOM05D006689 ORTHO05D008349 2.0e-37 160.6 239 35.1
Glyma.19G197900 Glycine max HOM05D006689 ORTHO05D008349 4.4e-37 159.5 310 32.6
COL.COLO4_29616 Corchorus olitorius HOM05D006689 ORTHO05D008349 1.0e-33 148.3 83 77.1
Gohir.A04G061585 Gossypium hirsutum HOM05D006689 ORTHO05D008349 1.0e-33 148.3 139 49.6
SGA_v2.0_scaffold184G40008 Striga asiatica HOM05D006689 ORTHO05D008349 2.5e-32 143.7 98 63.3
Actinidia03903 Actinidia chinensis HOM05D006689 ORTHO05D008349 8.8e-30 135.2 146 52.1
Ah.08g210180 Amaranthus hybridus HOM05D006689 ORTHO05D008349 7.0e-27 125.6 74 74.3
MCO04G525 Micromonas commoda HOM05D006689 ORTHO05D008349 3.6e-23 113.2 286 29.7
CDE02G1185 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 1.7e-20 104.4 95 49.5
Cre09.g388319 Chlamydomonas reinhardtii HOM05D006689 ORTHO05D008349 9.2e-19 98.6 342 25.7
RcHm_v2.0_Chr3g0475321 Rosa chinensis HOM05D006689 ORTHO05D008349 5.9e-18 95.9 72 62.5
PRCOL_00001274 Prasinoderma coloniale HOM05D006689 ORTHO05D008349 1.9e-16 90.9 295 28.1
Cfa021542 Carpinus fangiana HOM05D000750 ORTHO05D011662 2.7e-10 70.5 47 68.1
Hma1.2p1_1624F.1_g294270 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 1.9e-08 64.3 44 61.4
Sabra16G0075600 Salix brachista HOM05D006689 ORTHO05D008349 4.3e-08 63.2 46 58.7
arahy.Tifrunner.gnm1.ann1.HW4B1R Arachis hypogaea HOM05D006689 ORTHO05D008349 2.8e-07 60.5 37 67.6
Hund19874 Selenicereus undatus HOM05D006689 ORTHO05D008349 6.8e-06 55.8 44 54.5


User provided reference genes

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