Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25568 Brassica carinata HOM05D007404 ORTHO05D009281 1.1e-170 604.4 674 100.0
BraA05t22547Z Brassica rapa HOM05D007404 ORTHO05D009281 8.3e-78 295.8 692 66.6
BcaC05g29316 Brassica carinata HOM05D007404 ORTHO05D009281 5.0e-75 286.6 167 89.2
C05p56050 Brassica napus HOM05D007404 ORTHO05D009281 5.0e-75 286.6 167 89.2
BolC5t34272H Brassica oleracea HOM05D007404 ORTHO05D009281 7.3e-74 282.7 167 88.0
A05p37490 Brassica napus HOM05D007404 ORTHO05D009281 9.5e-74 282.3 166 88.6
Thhalv10020684m.g Eutrema salsugineum HOM05D007404 ORTHO05D009281 5.8e-63 246.5 177 76.3
Sp3g10090 Schrenkiella parvula HOM05D007404 ORTHO05D009281 4.9e-62 243.4 167 78.4
Carub.0003s1121 Capsella rubella HOM05D007404 ORTHO05D009281 1.4e-61 241.9 182 73.1
CARHR086420 Cardamine hirsuta HOM05D007404 ORTHO05D009281 1.7e-59 235.0 179 72.6
AT3G11890 Arabidopsis thaliana HOM05D007404 ORTHO05D009281 6.6e-59 233.0 155 81.3
Aa31LG3G5700 Aethionema arabicum HOM05D007404 ORTHO05D009281 1.2e-39 169.1 145 64.1
THA.LOC104826786 Tarenaya hassleriana HOM05D007404 ORTHO05D009281 7.6e-31 139.8 191 44.5
arahy.Tifrunner.gnm1.ann1.T424Z8 Arachis hypogaea HOM05D007404 ORTHO05D009281 1.4e-21 109.0 112 51.8
Cfa020098 Carpinus fangiana HOM05D007404 ORTHO05D009281 1.9e-21 108.6 105 53.3
Haze_20093 Corylus avellana HOM05D007404 ORTHO05D009281 4.2e-21 107.5 103 53.4
Phvul.001G199200 Phaseolus vulgaris HOM05D007404 ORTHO05D009281 1.2e-20 105.9 116 48.3
Sabra06G0152600 Salix brachista HOM05D007404 ORTHO05D009281 1.6e-20 105.5 96 55.2
TPR.G14403 Trifolium pratense HOM05D007404 ORTHO05D009281 1.6e-20 105.5 114 49.1
Atru.chr8.1254 Acer truncatum HOM05D007404 ORTHO05D009281 2.1e-20 105.1 84 57.1
Psat3g026720 Pisum sativum HOM05D007404 ORTHO05D009281 2.1e-20 105.1 113 50.4
Ca_09089_v3 Cicer arietinum L. HOM05D007404 ORTHO05D009281 3.5e-20 104.4 129 45.7
TWI74G0134 Tripterygium wilfordii HOM05D007404 ORTHO05D009281 3.5e-20 104.4 83 57.8
Lj1C1059T6 Lonicera japonica HOM05D007404 ORTHO05D009281 6.1e-20 103.6 128 43.8
Glyma.19G203100 Glycine max HOM05D007404 ORTHO05D009281 7.9e-20 103.2 83 59.0
VMungo1383G2609 Vigna mungo HOM05D007404 ORTHO05D009281 7.9e-20 103.2 157 41.4
Lj1g0004547 Lotus japonicus HOM05D007404 ORTHO05D009281 1.0e-19 102.8 111 49.5
Thecc.05G182600 Theobroma cacao HOM05D007404 ORTHO05D009281 1.0e-19 102.8 105 53.3
Glyma.03G205600 Glycine max HOM05D007404 ORTHO05D009281 1.3e-19 102.4 104 50.0
Cpa.g.sc222.4 Carica papaya HOM05D007404 ORTHO05D009281 1.8e-19 102.1 115 46.1
Medtr7g107080 Medicago truncatula HOM05D007404 ORTHO05D009281 2.3e-19 101.7 158 39.9
QL07p025963 Quercus lobata HOM05D007404 ORTHO05D009281 2.3e-19 101.7 184 40.8
Aqoxy1G00574 Aquilegia oxysepala HOM05D007404 ORTHO05D009281 3.9e-19 100.9 100 50.0
Gorai.002G232900 Gossypium raimondii HOM05D007404 ORTHO05D009281 3.9e-19 100.9 107 51.4
Potri.006G198500 Populus trichocarpa HOM05D007404 ORTHO05D009281 3.9e-19 100.9 83 60.2
Lalb_Chr25g0287801 Lupinus albus HOM05D007404 ORTHO05D009281 6.7e-19 100.1 172 36.6
Manes.08G038100 Manihot esculenta HOM05D007404 ORTHO05D009281 8.7e-19 99.8 83 56.6
Ciclev10012555m.g Citrus clementina HOM05D007404 ORTHO05D009281 1.1e-18 99.4 179 36.3
Duzib093G1799 Durio zibethinus HOM05D007404 ORTHO05D009281 1.1e-18 99.4 95 53.7
Eucgr.A02534 Eucalyptus grandis HOM05D007404 ORTHO05D009281 1.1e-18 99.4 102 48.0
Hma1.2p1_0304F.1_g119261 Hydrangea macrophylla HOM05D007404 ORTHO05D009281 1.5e-18 99.0 83 55.4
Prupe.7G088400 Prunus persica HOM05D007404 ORTHO05D009281 1.9e-18 98.6 109 47.7
Actinidia03848 Actinidia chinensis HOM05D007404 ORTHO05D009281 2.5e-18 98.2 111 45.0
Actinidia03958 Actinidia chinensis HOM05D007404 ORTHO05D009281 2.5e-18 98.2 111 45.0
Cc06_g07050 Coffea canephora HOM05D007404 ORTHO05D009281 2.5e-18 98.2 80 57.5
COL.COLO4_29466 Corchorus olitorius HOM05D007404 ORTHO05D009281 2.5e-18 98.2 105 51.4
SGA_v2.0_scaffold112G31676 Striga asiatica HOM05D007404 ORTHO05D009281 2.5e-18 98.2 101 50.5
CiPaw.09G024800 Carya illinoinensis HOM05D007404 ORTHO05D009281 3.3e-18 97.8 114 46.5
Oeu063091.1 Olea europaea HOM05D007404 ORTHO05D009281 3.3e-18 97.8 83 55.4
CANSAT64G1742 Cannabis sativa HOM05D007404 ORTHO05D009281 7.4e-18 96.7 80 56.2
Lsat_1_v5_gn_2_102100 Lactuca sativa HOM05D007404 ORTHO05D009281 9.7e-18 96.3 91 51.6
MD14G1045900 Malus domestica HOM05D007404 ORTHO05D009281 9.7e-18 96.3 89 52.8
Nitab4.5_0012268g0010 Nicotiana tabacum HOM05D007404 ORTHO05D009281 9.7e-18 96.3 83 55.4
TAR623G1670 Trochodendron aralioides HOM05D007404 ORTHO05D009281 9.7e-18 96.3 79 59.5
Gohir.D01G189300 Gossypium hirsutum HOM05D007404 ORTHO05D009281 1.3e-17 95.9 83 56.6
RcHm_v2.0_Chr3g0477561 Rosa chinensis HOM05D007404 ORTHO05D009281 1.3e-17 95.9 146 42.5
Sc07g0007250 Simmondsia chinensis HOM05D007404 ORTHO05D009281 2.2e-17 95.1 129 44.2
Dinv25087 Davidia involucrata HOM05D007404 ORTHO05D009281 2.8e-17 94.7 83 51.8
Rhsim03G0257900 Rhododendron simsii HOM05D007404 ORTHO05D009281 2.8e-17 94.7 83 51.8
vmacro06064 Vaccinium macrocarpon HOM05D007404 ORTHO05D009281 2.8e-17 94.7 83 51.8
Nn2g14440 Nelumbo nucifera HOM05D007404 ORTHO05D009281 3.7e-17 94.4 84 52.4
AUR62038411 Chenopodium quinoa HOM05D007404 ORTHO05D009281 4.8e-17 94.0 79 57.0
Migut.J00747 Erythranthe guttata HOM05D007404 ORTHO05D009281 4.8e-17 94.0 141 39.0
Nn2g14441 Nelumbo nucifera HOM05D007404 ORTHO05D009281 4.8e-17 94.0 84 52.4
Peaxi162Scf00211g00002 Petunia axillaris HOM05D007404 ORTHO05D009281 6.3e-17 93.6 81 55.6
CiPaw.10G021900 Carya illinoinensis HOM05D007404 ORTHO05D009281 8.2e-17 93.2 160 39.4
DCAR_013466 Daucus carota HOM05D007404 ORTHO05D009281 1.1e-16 92.8 83 53.0
ClCG01G015070 Citrullus lanatus HOM05D007404 ORTHO05D009281 1.4e-16 92.4 95 47.4
CAN.G13.10 Capsicum annuum HOM05D007404 ORTHO05D009281 1.8e-16 92.0 128 41.4
PGSC0003DMG400022875 Solanum tuberosum HOM05D007404 ORTHO05D009281 1.8e-16 92.0 128 41.4
Sed0004973 Sechium edule HOM05D007404 ORTHO05D009281 3.1e-16 91.3 98 45.9
Ah.02g113930 Amaranthus hybridus HOM05D007404 ORTHO05D009281 4.1e-16 90.9 153 38.6
AUR62036300 Chenopodium quinoa HOM05D007404 ORTHO05D009281 4.1e-16 90.9 79 54.4
MELO3C024593.2 Cucumis melo HOM05D007404 ORTHO05D009281 4.1e-16 90.9 128 40.6
Gohir.A01G199200 Gossypium hirsutum HOM05D007404 ORTHO05D009281 4.1e-16 90.9 94 50.0
HanXRQChr14g0453181 Helianthus annuus HOM05D007404 ORTHO05D009281 4.1e-16 90.9 76 57.9
MBI14_g28309_MAGBIO Magnolia biondii HOM05D007404 ORTHO05D009281 4.1e-16 90.9 82 54.9
MSTRG.19336 Avicennia marina HOM05D007404 ORTHO05D009281 5.3e-16 90.5 115 41.7
Hund10780 Selenicereus undatus HOM05D007404 ORTHO05D009281 5.3e-16 90.5 116 41.4
Sopen11g020730 Solanum pennellii HOM05D007404 ORTHO05D009281 5.3e-16 90.5 82 53.7
Nitab4.5_0000117g0060 Nicotiana tabacum HOM05D007404 ORTHO05D009281 6.9e-16 90.1 142 38.0
ECA238G2201 Erigeron canadensis HOM05D007404 ORTHO05D009281 2.0e-15 88.6 123 41.5
CsaV3_6G041180 Cucumis sativus L. HOM05D007404 ORTHO05D009281 2.6e-15 88.2 109 45.0
ATR0686G215 Amborella trichopoda HOM05D007404 ORTHO05D009281 4.5e-15 87.4 87 50.6
PGR004G0377 Punica granatum HOM05D007404 ORTHO05D009281 4.5e-15 87.4 113 42.5
Solyc11g045270.3 Solanum lycopersicum HOM05D007404 ORTHO05D009281 4.5e-15 87.4 125 42.4
EL10Ac5g11794 Beta vulgaris HOM05D007404 ORTHO05D009281 1.0e-14 86.3 81 54.3
FAN05G3976 Fragaria x ananassa HOM05D007404 ORTHO05D009281 1.3e-14 85.9 146 38.4
FvH4_6g21130 Fragaria vesca HOM05D007404 ORTHO05D009281 2.2e-14 85.1 146 38.4
FAN02G0840 Fragaria x ananassa HOM05D007404 ORTHO05D009281 2.2e-14 85.1 146 38.4
FAN14G5090 Fragaria x ananassa HOM05D007404 ORTHO05D009281 2.9e-14 84.7 146 38.4
FAN09G0350 Fragaria x ananassa HOM05D007404 ORTHO05D009281 6.5e-14 83.6 146 37.7
unitig_26.g9157 Utricularia gibba HOM05D000495 ORTHO05D009281 3.6e-12 77.8 111 41.4
AT3G11860 Arabidopsis thaliana HOM05D007404 ORTHO05D009281 4.6e-12 77.4 93 44.1
SEGI_39351 Sequoiadendron giganteum HOM05D007404 ORTHO05D009281 6.1e-12 77.0 85 45.9
Zm00001eb170760 Zea mays HOM05D007404 ORTHO05D009281 3.0e-11 74.7 118 41.5
HPP92_023288 Vanilla planifolia HOM05D007404 ORTHO05D009281 1.7e-09 68.9 84 42.9
Os08g0378800 Oryza sativa ssp. japonica HOM05D007404 ORTHO05D009281 3.7e-09 67.8 84 44.0
CDE09G0274 Ceratophyllum demersum HOM05D007404 ORTHO05D009281 2.9e-06 58.2 64 43.8
Mapoly0022s0106 Marchantia polymorpha HOM05D007404 ORTHO05D009281 6.5e-06 57.0 75 37.3


User provided reference genes

Program Settings