Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25551 Brassica carinata HOM05D007056 ORTHO05D008278 2.4e-101 372.1 176 100.0
BcaC05g29295 Brassica carinata HOM05D007056 ORTHO05D008278 3.2e-98 361.7 173 98.8
C05p55770 Brassica napus HOM05D007056 ORTHO05D008278 7.9e-97 357.1 174 98.3
BolC5t34244H Brassica oleracea HOM05D007056 ORTHO05D008278 7.9e-97 357.1 174 98.3
BcaB06g25552 Brassica carinata HOM05D007056 ORTHO05D008278 3.4e-92 341.7 166 95.8
A05p37300 Brassica napus HOM05D007056 ORTHO05D008278 1.4e-90 336.3 166 94.0
BraA05t22526Z Brassica rapa HOM05D007056 ORTHO05D008278 1.4e-90 336.3 166 94.0
Sp3g10270 Schrenkiella parvula HOM05D007056 ORTHO05D008278 1.4e-90 336.3 166 92.2
AT3G12040 Arabidopsis thaliana HOM05D007056 ORTHO05D008278 2.1e-89 332.4 166 91.0
CARHR086600 Cardamine hirsuta HOM05D007056 ORTHO05D008278 2.7e-89 332.0 166 91.6
Thhalv10021378m.g Eutrema salsugineum HOM05D007056 ORTHO05D008278 4.7e-89 331.3 166 91.0
Carub.0003s1138 Capsella rubella HOM05D007056 ORTHO05D008278 1.4e-88 329.7 166 90.4
AL3G23650 Arabidopsis lyrata HOM05D007056 ORTHO05D008278 4.4e-87 324.7 166 89.8
Lj1g0028043 Lotus japonicus HOM05D007056 ORTHO05D008278 2.3e-80 302.4 165 83.0
Aa31sc80G100 Aethionema arabicum HOM05D007056 ORTHO05D008278 3.0e-80 302.0 169 83.4
Lalb_Chr18g0048001 Lupinus albus HOM05D007056 ORTHO05D008278 8.8e-80 300.4 165 81.2
THA.LOC104809936 Tarenaya hassleriana HOM05D007056 ORTHO05D008278 2.0e-79 299.3 166 83.7
Potri.016G060000 Populus trichocarpa HOM05D007056 ORTHO05D008278 3.3e-79 298.5 165 80.6
EL10Ac3g06891 Beta vulgaris HOM05D007056 ORTHO05D008278 4.4e-79 298.1 164 82.9
Prupe.7G080200 Prunus persica HOM05D007056 ORTHO05D008278 4.4e-79 298.1 165 81.8
RcHm_v2.0_Chr3g0479281 Rosa chinensis HOM05D007056 ORTHO05D008278 7.5e-79 297.4 168 79.2
QL07p024320 Quercus lobata HOM05D007056 ORTHO05D008278 9.7e-79 297.0 168 81.0
QL07p024358 Quercus lobata HOM05D007056 ORTHO05D008278 9.7e-79 297.0 168 81.0
Duzib093G0790 Durio zibethinus HOM05D007056 ORTHO05D008278 2.2e-78 295.8 164 81.1
Glyma.19G149400 Glycine max HOM05D007056 ORTHO05D008278 2.8e-78 295.4 165 81.2
CANSAT64G0992 Cannabis sativa HOM05D007056 ORTHO05D008278 3.7e-78 295.0 165 80.6
FAN09G4108 Fragaria x ananassa HOM05D007056 ORTHO05D008278 3.7e-78 295.0 165 80.0
Ca_08534_v3 Cicer arietinum L. HOM05D007056 ORTHO05D008278 4.8e-78 294.7 165 80.0
Cfa020149 Carpinus fangiana HOM05D007056 ORTHO05D008278 6.3e-78 294.3 165 80.0
CSS0008084 Camellia sinensis var. sinensis HOM05D007056 ORTHO05D008278 1.1e-77 293.5 169 79.3
Gohir.D04G089300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 1.4e-77 293.1 164 79.9
Gorai.012G099400 Gossypium raimondii HOM05D007056 ORTHO05D008278 1.4e-77 293.1 164 79.9
Nn2g15729 Nelumbo nucifera HOM05D007056 ORTHO05D008278 1.4e-77 293.1 165 79.4
MD14G1054600 Malus domestica HOM05D007056 ORTHO05D008278 1.8e-77 292.7 172 79.1
Zm00001eb256530 Zea mays HOM05D007056 ORTHO05D008278 1.8e-77 292.7 165 81.8
TAR369G0080 Trochodendron aralioides HOM05D007056 ORTHO05D008278 2.4e-77 292.4 168 78.0
Atru.chr8.1149 Acer truncatum HOM05D007056 ORTHO05D008278 3.1e-77 292.0 166 79.5
Os02g0774500 Oryza sativa ssp. japonica HOM05D007056 ORTHO05D008278 3.1e-77 292.0 165 81.2
AUR62011999 Chenopodium quinoa HOM05D007056 ORTHO05D008278 4.1e-77 291.6 164 81.7
SGA_v2.0_scaffold69G23055 Striga asiatica HOM05D007056 ORTHO05D008278 4.1e-77 291.6 166 79.5
TWI77G0776 Tripterygium wilfordii HOM05D007056 ORTHO05D008278 4.1e-77 291.6 166 78.3
Actinidia38590 Actinidia chinensis HOM05D007056 ORTHO05D008278 5.3e-77 291.2 165 78.2
Thecc.05G174400 Theobroma cacao HOM05D007056 ORTHO05D008278 5.3e-77 291.2 164 79.9
Ciclev10012466m.g Citrus clementina HOM05D007056 ORTHO05D008278 2.0e-76 289.3 165 79.4
Lj2A365G87 Lonicera japonica HOM05D007056 ORTHO05D008278 2.7e-76 288.9 165 78.8
Sabra16G0062800 Salix brachista HOM05D007056 ORTHO05D008278 2.7e-76 288.9 165 78.8
Aqoxy2G00097 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 3.5e-76 288.5 165 78.8
ATR0598G297 Amborella trichopoda HOM05D007056 ORTHO05D008278 5.9e-76 287.7 164 79.3
arahy.Tifrunner.gnm1.ann1.DK1M71 Arachis hypogaea HOM05D007056 ORTHO05D008278 1.0e-75 287.0 164 78.0
FAN14G2508 Fragaria x ananassa HOM05D007056 ORTHO05D008278 1.3e-75 286.6 165 77.6
Cpa.g.sc85.61 Carica papaya HOM05D007056 ORTHO05D008278 1.7e-75 286.2 165 78.8
CiPaw.09G028900 Carya illinoinensis HOM05D007056 ORTHO05D008278 2.2e-75 285.8 165 78.2
VMungo1383G1827 Vigna mungo HOM05D007056 ORTHO05D008278 2.2e-75 285.8 165 78.8
CsaV3_3G038650 Cucumis sativus L. HOM05D007056 ORTHO05D008278 2.9e-75 285.4 164 78.7
PGR142G3072 Punica granatum HOM05D007056 ORTHO05D008278 2.9e-75 285.4 164 77.4
Ah.04g152820 Amaranthus hybridus HOM05D007056 ORTHO05D008278 3.8e-75 285.0 164 81.1
MBI19_g17420_MAGBIO Magnolia biondii HOM05D007056 ORTHO05D008278 3.8e-75 285.0 164 78.7
arahy.Tifrunner.gnm1.ann1.LTU6F0 Arachis hypogaea HOM05D007056 ORTHO05D008278 6.5e-75 284.3 164 77.4
AUR62015338 Chenopodium quinoa HOM05D007056 ORTHO05D008278 6.5e-75 284.3 165 80.6
Dinv16370 Davidia involucrata HOM05D007056 ORTHO05D008278 6.5e-75 284.3 165 76.4
Cc06_g15700 Coffea canephora HOM05D007056 ORTHO05D008278 8.5e-75 283.9 165 78.8
HanXRQChr01g0010031 Helianthus annuus HOM05D007056 ORTHO05D008278 8.5e-75 283.9 165 77.6
Medtr7g093540 Medicago truncatula HOM05D007056 ORTHO05D008278 1.1e-74 283.5 165 77.0
Phvul.001G143900 Phaseolus vulgaris HOM05D007056 ORTHO05D008278 1.1e-74 283.5 164 79.3
Psat3g067120 Pisum sativum HOM05D007056 ORTHO05D008278 1.5e-74 283.1 165 77.6
COL.COLO4_05956 Corchorus olitorius HOM05D007056 ORTHO05D008278 3.2e-74 282.0 165 77.0
CAN.G128.50 Capsicum annuum HOM05D007056 ORTHO05D008278 9.4e-74 280.4 166 78.3
Peaxi162Scf00249g01221 Petunia axillaris HOM05D007056 ORTHO05D008278 1.2e-73 280.0 170 75.9
Nitab4.5_0001079g0030 Nicotiana tabacum HOM05D007056 ORTHO05D008278 1.6e-73 279.6 166 76.5
HPP92_004381 Vanilla planifolia HOM05D007056 ORTHO05D008278 1.6e-73 279.6 165 79.4
Sopen10g031100 Solanum pennellii HOM05D007056 ORTHO05D008278 6.1e-73 277.7 166 77.7
Eucgr.K01848 Eucalyptus grandis HOM05D007056 ORTHO05D008278 8.0e-73 277.3 164 75.6
Solyc10g080560.2 Solanum lycopersicum HOM05D007056 ORTHO05D008278 8.0e-73 277.3 166 77.7
PGSC0003DMG400023706 Solanum tuberosum HOM05D007056 ORTHO05D008278 8.0e-73 277.3 166 77.7
Rhsim04G0094900 Rhododendron simsii HOM05D007056 ORTHO05D008278 2.3e-72 275.8 163 75.5
CDE06G2434 Ceratophyllum demersum HOM05D007056 ORTHO05D008278 4.0e-72 275.0 165 72.1
GSVIVG01033475001 Vitis vinifera HOM05D007056 ORTHO05D008278 1.2e-71 273.5 163 77.9
Lsat_1_v5_gn_5_165300 Lactuca sativa HOM05D007056 ORTHO05D008278 1.5e-71 273.1 170 73.5
DCAR_019779 Daucus carota HOM05D007056 ORTHO05D008278 7.5e-71 270.8 196 66.8
AagrBONN_evm.TU.Sc2ySwM_344.2853 Anthoceros agrestis HOM05D007056 ORTHO05D008278 9.8e-71 270.4 165 74.5
SMO146G0068 Selaginella moellendorffii HOM05D007056 ORTHO05D008278 1.7e-70 269.6 164 75.0
ECA248G2516 Erigeron canadensis HOM05D007056 ORTHO05D008278 6.3e-70 267.7 162 75.3
Mapoly0003s0280 Marchantia polymorpha HOM05D007056 ORTHO05D008278 2.4e-69 265.8 167 71.3
SEGI_25756 Sequoiadendron giganteum HOM05D007056 ORTHO05D008278 4.5e-68 261.5 164 72.0
unitig_27.g25110 Utricularia gibba HOM05D007056 ORTHO05D008278 5.9e-68 261.2 163 71.8
TPR.G35780 Trifolium pratense HOM05D007056 ORTHO05D008278 1.0e-67 260.4 159 74.2
Hund24814 Selenicereus undatus HOM05D007056 ORTHO05D008278 6.1e-65 251.1 166 73.5
PSO541G5037 Papaver somniferum HOM05D007056 ORTHO05D008278 7.5e-63 244.2 138 81.9
vmacro22110 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 1.7e-62 243.0 178 64.0
Pp3c1_41490 Physcomitrium patens HOM05D007056 ORTHO05D008278 4.9e-62 241.5 166 68.1
PSO675G9168 Papaver somniferum HOM05D007056 ORTHO05D008278 8.3e-62 240.7 138 80.4
Aqoxy3G01855 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 2.4e-61 239.2 207 58.0
ECA248G2501 Erigeron canadensis HOM05D007056 ORTHO05D008278 5.4e-61 238.0 142 76.1
CBR_g48019 Chara braunii HOM05D000019 ORTHO05D000002 5.2e-56 221.5 155 66.5
Oeu024494.3 Olea europaea HOM05D007056 ORTHO05D008278 7.0e-53 211.1 199 56.3
FvH4_6g21980 Fragaria vesca HOM05D007056 ORTHO05D008278 2.7e-52 209.1 114 79.8
Sed0027134 Sechium edule HOM05D007056 ORTHO05D008278 1.0e-51 207.2 112 83.9
Migut.J01851 Erythranthe guttata HOM05D007056 ORTHO05D008278 6.6e-51 204.5 121 76.0
ECA248G3402 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.8e-49 199.1 122 73.8
Gohir.A04G057300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 1.2e-39 167.2 93 80.6
Psat3g067080 Pisum sativum HOM05D007056 ORTHO05D008278 4.9e-38 161.8 93 77.4
ClCG10G017660 Citrullus lanatus HOM05D007056 ORTHO05D008278 2.4e-37 159.5 85 83.5
Nitab4.5_0001440g0050 Nicotiana tabacum HOM05D007056 ORTHO05D008278 4.3e-34 148.7 97 71.1
Haze_20013 Corylus avellana HOM05D007056 ORTHO05D008278 1.6e-33 146.7 381 30.2
Psat3g067040 Pisum sativum HOM05D007056 ORTHO05D008278 2.4e-32 142.9 153 52.3
Manes.08G042900 Manihot esculenta HOM05D007056 ORTHO05D008278 1.2e-28 130.6 68 83.8
FAN02G0430 Fragaria x ananassa HOM05D007056 ORTHO05D008278 3.5e-28 129.0 66 81.8
Hma1.2p1_0645F.1_g194860 Hydrangea macrophylla HOM05D007056 ORTHO05D008278 4.6e-28 128.6 73 78.1
Sc13g0002370 Simmondsia chinensis HOM05D007056 ORTHO05D008278 7.8e-28 127.9 70 80.0
PRCOL_00003183 Prasinoderma coloniale HOM05D007056 ORTHO05D008278 1.5e-26 123.6 185 41.6
MELO3C009610.2 Cucumis melo HOM05D007056 ORTHO05D008278 1.9e-26 123.2 165 44.8
SHI31778 Sapria himalayana HOM05D007056 ORTHO05D008278 7.3e-26 121.3 67 80.6
ECA233G2032 Erigeron canadensis HOM05D007056 ORTHO05D008278 9.9e-15 84.3 44 79.5
vmacro22990 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 8.7e-11 71.2 34 85.3


User provided reference genes

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