Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25550 Brassica carinata HOM05D003641 ORTHO05D004915 3.8e-199 698.0 349 100.0
C05p55760 Brassica napus HOM05D003641 ORTHO05D004915 2.2e-183 645.6 355 91.3
BraA05t22525Z Brassica rapa HOM05D003641 ORTHO05D004915 9.3e-182 640.2 354 90.7
CARHR086620 Cardamine hirsuta HOM05D003641 ORTHO05D004915 2.1e-181 639.0 360 87.5
A05p37290 Brassica napus HOM05D003641 ORTHO05D004915 1.3e-180 636.3 356 89.9
AL3G23660 Arabidopsis lyrata HOM05D003641 ORTHO05D004915 2.5e-179 632.1 361 86.4
Sp3g10280 Schrenkiella parvula HOM05D003641 ORTHO05D004915 9.6e-179 630.2 360 86.1
Aa31sc80G90 Aethionema arabicum HOM05D003641 ORTHO05D004915 1.6e-178 629.4 360 86.9
AT3G12050 Arabidopsis thaliana HOM05D003641 ORTHO05D004915 1.6e-178 629.4 361 86.4
BolC5t34243H Brassica oleracea HOM05D003641 ORTHO05D004915 4.0e-177 624.8 398 81.4
Thhalv10021006m.g Eutrema salsugineum HOM05D003641 ORTHO05D004915 1.4e-169 599.7 368 81.0
Carub.0003s1139 Capsella rubella HOM05D003641 ORTHO05D004915 1.9e-166 589.3 363 80.4
BcaC05g29294 Brassica carinata HOM05D003641 ORTHO05D004915 3.3e-163 578.6 355 83.4
THA.LOC104826776 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 1.9e-158 562.8 355 76.6
THA.LOC104809934 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 6.7e-156 554.3 352 76.7
Manes.09G037400 Manihot esculenta HOM05D003641 ORTHO05D004915 7.4e-155 550.8 354 75.1
Atru.chr8.1148 Acer truncatum HOM05D003641 ORTHO05D004915 1.7e-154 549.7 355 74.9
CsaV3_3G038670 Cucumis sativus L. HOM05D003641 ORTHO05D004915 4.5e-152 541.6 356 74.2
ClCG10G017650 Citrullus lanatus HOM05D003641 ORTHO05D004915 2.9e-151 538.9 354 74.9
Ciclev10012043m.g Citrus clementina HOM05D003641 ORTHO05D004915 2.9e-151 538.9 364 72.0
TWI74G1529 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 2.9e-151 538.9 349 73.4
Duzib093G1627 Durio zibethinus HOM05D003641 ORTHO05D004915 8.5e-151 537.3 353 73.1
MD14G1054700 Malus domestica HOM05D003641 ORTHO05D004915 8.5e-151 537.3 350 72.3
CANSAT64G0207 Cannabis sativa HOM05D003641 ORTHO05D004915 1.9e-150 536.2 363 71.1
MELO3C009611.2 Cucumis melo HOM05D003641 ORTHO05D004915 3.2e-150 535.4 355 73.2
Manes.08G042800 Manihot esculenta HOM05D003641 ORTHO05D004915 3.2e-150 535.4 349 72.5
TWI53G2154 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 5.5e-150 534.6 349 72.5
Gorai.012G099600 Gossypium raimondii HOM05D003641 ORTHO05D004915 1.2e-149 533.5 355 73.2
Thecc.05G174300 Theobroma cacao HOM05D003641 ORTHO05D004915 1.6e-149 533.1 354 73.2
CiPaw.09G029000 Carya illinoinensis HOM05D003641 ORTHO05D004915 3.6e-149 531.9 352 71.6
Ca_12045_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 3.6e-149 531.9 350 72.9
Gohir.D04G089500 Gossypium hirsutum HOM05D003641 ORTHO05D004915 3.6e-149 531.9 355 73.0
Gohir.A04G051900 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.0e-148 530.4 355 71.0
Sc13g0002360 Simmondsia chinensis HOM05D003641 ORTHO05D004915 1.0e-148 530.4 349 72.2
Cpa.g.sc85.60 Carica papaya HOM05D003641 ORTHO05D004915 1.4e-148 530.0 359 71.0
Duzib128G0491 Durio zibethinus HOM05D003641 ORTHO05D004915 3.0e-148 528.9 353 72.0
Sabra06G0149100 Salix brachista HOM05D003641 ORTHO05D004915 3.0e-148 528.9 356 72.2
Haze_20012 Corylus avellana HOM05D003641 ORTHO05D004915 8.8e-148 527.3 352 71.9
Hund24813 Selenicereus undatus HOM05D003641 ORTHO05D004915 1.1e-147 526.9 351 72.1
Cfa020150 Carpinus fangiana HOM05D003641 ORTHO05D004915 2.0e-147 526.2 352 71.9
COL.COLO4_29349 Corchorus olitorius HOM05D003641 ORTHO05D004915 2.0e-147 526.2 352 70.7
Potri.006G194400 Populus trichocarpa HOM05D003641 ORTHO05D004915 2.6e-147 525.8 356 71.9
Sabra16G0062900 Salix brachista HOM05D003641 ORTHO05D004915 2.6e-147 525.8 351 74.1
FvH4_6g21990 Fragaria vesca HOM05D003641 ORTHO05D004915 3.3e-147 525.4 349 71.1
FAN14G0097 Fragaria x ananassa HOM05D003641 ORTHO05D004915 3.3e-147 525.4 349 71.1
QL07p024293 Quercus lobata HOM05D003641 ORTHO05D004915 4.4e-147 525.0 365 70.7
DCAR_017036 Daucus carota HOM05D003641 ORTHO05D004915 9.7e-147 523.9 351 72.4
Ca_08533_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.3e-146 523.5 360 70.8
Psat3g067000 Pisum sativum HOM05D003641 ORTHO05D004915 2.8e-146 522.3 355 70.4
Potri.016G060100 Populus trichocarpa HOM05D003641 ORTHO05D004915 6.3e-146 521.2 355 72.7
Oeu063867.1 Olea europaea HOM05D003641 ORTHO05D004915 1.1e-145 520.4 349 71.1
PGSC0003DMG400011447 Solanum tuberosum HOM05D003641 ORTHO05D004915 1.4e-145 520.0 352 71.6
CAN.G960.10 Capsicum annuum HOM05D003641 ORTHO05D004915 1.8e-145 519.6 355 71.3
TAR633G0428 Trochodendron aralioides HOM05D003641 ORTHO05D004915 1.8e-145 519.6 349 72.5
RcHm_v2.0_Chr3g0479291 Rosa chinensis HOM05D003641 ORTHO05D004915 2.4e-145 519.2 351 70.9
Eucgr.A02465 Eucalyptus grandis HOM05D003641 ORTHO05D004915 4.1e-145 518.5 358 69.6
SalBow6G5303 Salvia bowleyana HOM05D003641 ORTHO05D004915 4.1e-145 518.5 353 71.4
PGR004G2452 Punica granatum HOM05D003641 ORTHO05D004915 5.3e-145 518.1 354 69.8
Lj2A365T90 Lonicera japonica HOM05D003641 ORTHO05D004915 7.0e-145 517.7 349 71.6
EL10Ac3g06892 Beta vulgaris HOM05D003641 ORTHO05D004915 9.1e-145 517.3 349 71.3
TPR.G30301 Trifolium pratense HOM05D003641 ORTHO05D004915 1.2e-144 516.9 350 70.9
Cc06_g15710 Coffea canephora HOM05D003641 ORTHO05D004915 1.6e-144 516.5 353 71.4
Nitab4.5_0007274g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 2.0e-144 516.2 350 70.3
AUR62011998 Chenopodium quinoa HOM05D003641 ORTHO05D004915 2.6e-144 515.8 357 69.2
Sopen10g029550 Solanum pennellii HOM05D003641 ORTHO05D004915 5.9e-144 514.6 352 69.6
MD12G1055300 Malus domestica HOM05D003641 ORTHO05D004915 7.7e-144 514.2 351 68.9
CiPaw.10G025600 Carya illinoinensis HOM05D003641 ORTHO05D004915 1.0e-143 513.8 351 68.7
HanXRQChr01g0010591 Helianthus annuus HOM05D003641 ORTHO05D004915 1.7e-143 513.1 355 71.0
Lj5g0013930 Lotus japonicus HOM05D003641 ORTHO05D004915 1.7e-143 513.1 361 70.9
Medtr0136s0060 Medicago truncatula HOM05D003641 ORTHO05D004915 1.7e-143 513.1 353 70.5
Solyc10g078930.2 Solanum lycopersicum HOM05D003641 ORTHO05D004915 1.7e-143 513.1 352 69.9
TAR636G0728 Trochodendron aralioides HOM05D003641 ORTHO05D004915 2.2e-143 512.7 349 69.6
Sed0007356 Sechium edule HOM05D003641 ORTHO05D004915 2.9e-143 512.3 352 69.9
FAN02G1826 Fragaria x ananassa HOM05D003641 ORTHO05D004915 3.8e-143 511.9 349 70.2
Rhsim03G0004900 Rhododendron simsii HOM05D003641 ORTHO05D004915 3.8e-143 511.9 352 70.5
vmacro07894 Vaccinium macrocarpon HOM05D003641 ORTHO05D004915 5.0e-143 511.5 349 70.2
FAN05G2657 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.5e-142 510.0 349 68.8
Medtr7g093500 Medicago truncatula HOM05D003641 ORTHO05D004915 1.9e-142 509.6 355 69.0
ECA248G0025 Erigeron canadensis HOM05D003641 ORTHO05D004915 2.5e-142 509.2 351 71.2
Hma1.2p1_0676F.1_g201930 Hydrangea macrophylla HOM05D003641 ORTHO05D004915 2.5e-142 509.2 349 70.2
Prupe.7G080100 Prunus persica HOM05D003641 ORTHO05D004915 2.5e-142 509.2 354 68.1
FAN09G3507 Fragaria x ananassa HOM05D003641 ORTHO05D004915 3.2e-142 508.8 349 68.5
CSS0018208 Camellia sinensis var. sinensis HOM05D003641 ORTHO05D004915 4.2e-142 508.4 349 70.8
AUR62015343 Chenopodium quinoa HOM05D003641 ORTHO05D004915 4.2e-142 508.4 349 70.2
arahy.Tifrunner.gnm1.ann1.G8NWJQ Arachis hypogaea HOM05D003641 ORTHO05D004915 5.5e-142 508.1 360 67.5
arahy.Tifrunner.gnm1.ann1.86C462 Arachis hypogaea HOM05D003641 ORTHO05D004915 1.2e-141 506.9 360 67.5
Lj1g0002782 Lotus japonicus HOM05D003641 ORTHO05D004915 2.7e-141 505.8 352 69.9
Glyma.03G146100 Glycine max HOM05D003641 ORTHO05D004915 3.6e-141 505.4 357 67.5
SGA_v2.0_scaffold105G30499 Striga asiatica HOM05D003641 ORTHO05D004915 4.7e-141 505.0 357 70.9
Glyma.09G109200 Glycine max HOM05D003641 ORTHO05D004915 1.0e-140 503.8 350 69.7
MBI19_g17419_MAGBIO Magnolia biondii HOM05D003641 ORTHO05D004915 1.8e-140 503.1 349 69.3
Peaxi162Scf00258g00921 Petunia axillaris HOM05D003641 ORTHO05D004915 1.8e-140 503.1 353 67.7
Migut.J01850 Erythranthe guttata HOM05D003641 ORTHO05D004915 3.0e-140 502.3 357 68.9
CDE05G2508 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 8.8e-140 500.7 349 67.6
SGA_v2.0_scaffold69G23056 Striga asiatica HOM05D003641 ORTHO05D004915 8.8e-140 500.7 355 69.9
Dinv24057 Davidia involucrata HOM05D003641 ORTHO05D004915 1.2e-139 500.4 353 68.6
Lalb_Chr18g0047991 Lupinus albus HOM05D003641 ORTHO05D004915 2.6e-139 499.2 358 67.9
Lsat_1_v5_gn_5_164500 Lactuca sativa HOM05D003641 ORTHO05D004915 4.4e-139 498.4 346 68.8
Aqoxy1G00140 Aquilegia oxysepala HOM05D003641 ORTHO05D004915 5.7e-139 498.0 356 68.5
Lju124A24T32 Lonicera japonica HOM05D003641 ORTHO05D004915 5.7e-139 498.0 352 68.5
MSTRG.19915 Avicennia marina HOM05D003641 ORTHO05D004915 9.7e-139 497.3 355 67.9
Glyma.02G171100 Glycine max HOM05D003641 ORTHO05D004915 1.7e-138 496.5 351 68.7
Glyma.19G149300 Glycine max HOM05D003641 ORTHO05D004915 2.2e-138 496.1 355 67.3
ATR0598G178 Amborella trichopoda HOM05D003641 ORTHO05D004915 4.8e-138 495.0 349 68.5
Phvul.001G143800 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 1.1e-137 493.8 361 64.8
VMungo1383G0826 Vigna mungo HOM05D003641 ORTHO05D004915 1.4e-137 493.4 356 66.3
Oeu006209.1 Olea europaea HOM05D003641 ORTHO05D004915 9.1e-137 490.7 367 65.7
CDE11G0833 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 2.0e-136 489.6 350 66.3
PSO135G0566 Papaver somniferum HOM05D003641 ORTHO05D004915 1.0e-135 487.3 355 67.6
Hund19209 Selenicereus undatus HOM05D003641 ORTHO05D004915 1.0e-135 487.3 355 66.8
PSO724G0609 Papaver somniferum HOM05D003641 ORTHO05D004915 1.3e-135 486.9 359 67.4
Phvul.007G261100 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 1.3e-135 486.9 352 65.6
Nitab4.5_0001137g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 8.5e-135 484.2 351 67.0
Ah.04g152830 Amaranthus hybridus HOM05D003641 ORTHO05D004915 2.1e-133 479.6 332 68.1
VMungo0720G0815 Vigna mungo HOM05D003641 ORTHO05D004915 1.0e-132 477.2 353 64.9
unitig_899.g15167 Utricularia gibba HOM05D003641 ORTHO05D004915 1.4e-132 476.9 353 66.9
Nitab4.5_0000105g0210 Nicotiana tabacum HOM05D003641 ORTHO05D004915 2.3e-132 476.1 348 68.4
Nitab4.5_0002343g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 8.8e-132 474.2 355 67.0
SMO203G0054 Selaginella moellendorffii HOM05D003641 ORTHO05D004915 9.5e-126 454.1 349 62.2
unitig_746.g26803 Utricularia gibba HOM05D003641 ORTHO05D004915 1.2e-125 453.8 336 66.4
Zm00001eb037640 Zea mays HOM05D003641 ORTHO05D004915 2.1e-125 453.0 351 63.5
HPP92_005766 Vanilla planifolia HOM05D003641 ORTHO05D004915 2.6e-123 446.0 365 60.3
Os08g0464000 Oryza sativa ssp. japonica HOM05D003641 ORTHO05D004915 1.8e-121 439.9 359 59.6
Pp3c9_15400 Physcomitrium patens HOM05D003641 ORTHO05D004915 2.4e-121 439.5 353 59.8
Pp3c15_21400 Physcomitrium patens HOM05D003641 ORTHO05D004915 2.7e-120 436.0 354 60.2
Mapoly0109s0023 Marchantia polymorpha HOM05D003641 ORTHO05D004915 1.7e-119 433.3 351 61.3
Zm00001eb177410 Zea mays HOM05D003641 ORTHO05D004915 2.9e-119 432.6 356 59.6
HPP92_009321 Vanilla planifolia HOM05D003641 ORTHO05D004915 3.8e-119 432.2 362 59.4
AagrBONN_evm.TU.Sc2ySwM_344.3694 Anthoceros agrestis HOM05D003641 ORTHO05D004915 1.9e-118 429.9 349 59.9
Nn7g35971 Nelumbo nucifera HOM05D003641 ORTHO05D004915 1.6e-112 410.2 295 67.5
Nn7g35972 Nelumbo nucifera HOM05D003641 ORTHO05D004915 4.6e-112 408.7 303 65.7
Psat6g123080 Pisum sativum HOM05D003641 ORTHO05D004915 5.9e-112 408.3 294 67.3
Actinidia22049 Actinidia chinensis HOM05D003641 ORTHO05D004915 2.4e-105 386.3 350 58.9
Gorai.012G099500 Gossypium raimondii HOM05D003641 ORTHO05D004915 8.6e-103 377.9 327 60.2
TPR.G35793 Trifolium pratense HOM05D003641 ORTHO05D004915 6.2e-101 371.7 292 62.7
GSVIVG01033476001 Vitis vinifera HOM05D003641 ORTHO05D004915 2.2e-98 363.2 349 53.9
Actinidia14376 Actinidia chinensis HOM05D003641 ORTHO05D004915 8.3e-98 361.3 322 58.7
BcaC09g48210 Brassica carinata HOM05D003641 ORTHO05D004915 1.2e-88 330.9 242 76.0
Gohir.D04G089400 Gossypium hirsutum HOM05D003641 ORTHO05D004915 3.6e-77 292.7 215 68.8
PRCOL_00005901 Prasinoderma coloniale HOM05D003641 ORTHO05D004915 1.2e-72 277.7 356 43.0
SEGI_39925 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 2.0e-67 260.4 279 50.5
MCO07G236 Micromonas commoda HOM05D003641 ORTHO05D004915 1.8e-63 247.3 350 42.3
Gohir.A04G052026 Gossypium hirsutum HOM05D003641 ORTHO05D004915 2.5e-62 243.4 156 73.1
Gohir.A04G052000 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.4e-60 237.7 175 69.1
Cre03.g199300 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D004915 2.1e-56 223.8 356 35.7
Actinidia32404 Actinidia chinensis HOM05D003641 ORTHO05D004915 4.8e-53 212.6 115 83.5
arahy.Tifrunner.gnm1.ann1.EPN7T6 Arachis hypogaea HOM05D003641 ORTHO05D004915 2.4e-52 210.3 149 69.1
arahy.Tifrunner.gnm1.ann1.VQQW03 Arachis hypogaea HOM05D003641 ORTHO05D004915 4.1e-52 209.5 126 78.6
Ca_31327_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 3.2e-33 146.7 85 74.1
Ca_14569_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 4.2e-33 146.4 85 74.1
Ca_20435_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 9.4e-33 145.2 85 72.9
SEGI_05882 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 2.7e-32 143.7 164 51.2
Ca_09720_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.4e-31 141.4 85 70.6
Glyma.09G095600 Glycine max HOM05D003641 ORTHO05D004915 6.3e-29 132.5 131 52.7
arahy.Tifrunner.gnm1.ann1.20Y790 Arachis hypogaea HOM05D003641 ORTHO05D004915 5.3e-28 129.4 106 61.3
Hund07686 Selenicereus undatus HOM05D003641 ORTHO05D011049 7.0e-28 129.0 183 42.1
HanXRQChr03g0083061 Helianthus annuus HOM05D003641 ORTHO05D004915 2.6e-27 127.1 139 46.0
Hund07687 Selenicereus undatus HOM05D003641 ORTHO05D021213 5.0e-26 122.9 191 43.5
Ca_12039_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 4.4e-22 109.8 58 87.9
Dinv18651 Davidia involucrata HOM05D003641 ORTHO05D004915 4.4e-22 109.8 63 76.2
Dinv18648 Davidia involucrata HOM05D003641 ORTHO05D004915 1.7e-21 107.8 59 79.7
Dinv26263 Davidia involucrata HOM05D003641 ORTHO05D004915 1.7e-21 107.8 59 79.7
Nn8g39306 Nelumbo nucifera HOM05D003641 ORTHO05D004915 1.0e-18 98.6 60 76.7
arahy.Tifrunner.gnm1.ann1.XYD4PT Arachis hypogaea HOM05D003641 ORTHO05D038899 3.8e-18 96.7 66 66.7
Ca_03268_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 5.0e-18 96.3 59 74.6
MCO11G399 Micromonas commoda HOM05D003641 ORTHO05D044219 6.5e-18 95.9 153 36.6
EL10Ac8g19334 Beta vulgaris HOM05D003641 ORTHO05D027013 8.5e-18 95.5 75 57.3
BolC1t05367H Brassica oleracea HOM05D003641 ORTHO05D038899 1.9e-17 94.4 57 78.9
CBR_g18730 Chara braunii HOM05D003641 ORTHO05D004915 1.9e-17 94.4 55 80.0
Ca_20824_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 6.1e-16 89.4 65 58.5
TWI14G1341 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 3.7e-13 80.1 177 34.5
Cre08.g358539 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D044219 1.1e-12 78.6 154 31.8
SGA_v2.0_scaffold200G41266 Striga asiatica HOM05D037212 ORTHO05D027013 9.1e-12 75.5 64 59.4
CsaV3_5G015400 Cucumis sativus L. HOM05D003641 ORTHO05D004915 6.5e-10 69.3 50 62.0
VMungo0464G0530 Vigna mungo HOM05D003641 ORTHO05D004915 6.5e-10 69.3 64 48.4
PGSC0003DMG400035352 Solanum tuberosum HOM05D003641 ORTHO05D004915 1.2e-08 65.1 83 42.2
Peaxi162Scf00003g04539 Petunia axillaris HOM05D000312 ORTHO05D000221 1.6e-08 64.7 87 41.4
arahy.Tifrunner.gnm1.ann1.5I9U23 Arachis hypogaea HOM05D003641 ORTHO05D085625 8.0e-08 62.4 119 37.8
Sopen02g001110 Solanum pennellii HOM05D003641 ORTHO05D004915 3.4e-06 57.0 96 44.8


User provided reference genes

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