Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25485 Brassica carinata HOM05D010616 ORTHO05D003654 2.9e-92 342.0 196 100.0
BcaC05g29208 Brassica carinata HOM05D010616 ORTHO05D003654 2.1e-69 266.2 203 78.8
C05p54810 Brassica napus HOM05D010616 ORTHO05D003654 2.1e-69 266.2 203 78.8
BolC5t34153H Brassica oleracea HOM05D010616 ORTHO05D003654 2.1e-69 266.2 203 78.8
A05p36410 Brassica napus HOM05D010616 ORTHO05D003654 1.0e-68 263.8 204 77.9
BraA05t22441Z Brassica rapa HOM05D010616 ORTHO05D003654 3.0e-68 262.3 204 78.4
Thhalv10021559m.g Eutrema salsugineum HOM05D010616 ORTHO05D003654 3.5e-61 238.8 202 68.8
Sp3g11300 Schrenkiella parvula HOM05D010616 ORTHO05D003654 1.7e-60 236.5 206 66.5
BolC3t16890H Brassica oleracea HOM05D010616 ORTHO05D003654 6.4e-55 218.0 213 67.6
A03p38060 Brassica napus HOM05D010616 ORTHO05D003654 3.0e-52 209.1 214 66.8
BcaC01g04015 Brassica carinata HOM05D010616 ORTHO05D003654 3.9e-52 208.8 213 65.7
C03p46190 Brassica napus HOM05D010616 ORTHO05D003654 3.9e-52 208.8 213 65.7
BraA03t12959Z Brassica rapa HOM05D010616 ORTHO05D003654 3.6e-50 202.2 204 66.7
BcaNung05271 Brassica carinata HOM05D010616 ORTHO05D003654 1.4e-49 200.3 214 64.5
AT3G13130 Arabidopsis thaliana HOM05D010616 ORTHO05D003654 6.4e-47 191.4 207 61.4
Carub.0003s1247 Capsella rubella HOM05D010616 ORTHO05D003654 1.9e-38 163.3 219 53.9
CARHR087720 Cardamine hirsuta HOM05D010616 ORTHO05D003654 2.7e-37 159.5 210 53.3
THA.LOC104810289 Tarenaya hassleriana HOM05D010616 ORTHO05D003654 1.2e-24 117.5 201 38.3
THA.LOC104822734 Tarenaya hassleriana HOM05D010616 ORTHO05D003654 7.1e-22 108.2 203 44.3
AL3G24870 Arabidopsis lyrata HOM05D010616 ORTHO05D003654 2.1e-21 106.7 160 52.5
COL.COLO4_09813 Corchorus olitorius HOM05D005871 ORTHO05D003654 2.9e-15 86.3 248 35.1
Sabra16G0239800 Salix brachista HOM05D005871 ORTHO05D003654 3.2e-14 82.8 243 33.7
Manes.15G061300 Manihot esculenta HOM05D005871 ORTHO05D003654 9.4e-14 81.3 196 33.2
Haze_09808 Corylus avellana HOM05D005871 ORTHO05D003654 2.7e-13 79.7 212 34.0
Gohir.A04G006400 Gossypium hirsutum HOM05D005871 ORTHO05D003654 6.1e-13 78.6 216 31.0
Thecc.07G015800 Theobroma cacao HOM05D005871 ORTHO05D003654 7.9e-13 78.2 252 34.1
Gohir.D08G035400 Gossypium hirsutum HOM05D005871 ORTHO05D003654 1.4e-12 77.4 207 30.4
Cfa020208 Carpinus fangiana HOM05D005871 ORTHO05D003654 2.3e-12 76.6 213 32.9
Duzib170G1062 Durio zibethinus HOM05D005871 ORTHO05D003654 2.3e-12 76.6 226 32.3
Gohir.D05G383000 Gossypium hirsutum HOM05D005871 ORTHO05D003654 2.3e-12 76.6 224 32.1
Cpa.g.sc12.163 Carica papaya HOM05D005871 ORTHO05D003654 3.9e-12 75.9 240 35.8
TPR.G10004 Trifolium pratense HOM05D005871 ORTHO05D003654 3.9e-12 75.9 217 30.4
Gorai.004G033400 Gossypium raimondii HOM05D005871 ORTHO05D003654 5.1e-12 75.5 207 35.3
TWI38G0819 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 5.1e-12 75.5 232 34.9
Gohir.A08G024900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 8.8e-12 74.7 209 31.6
Gorai.009G449600 Gossypium raimondii HOM05D005871 ORTHO05D003654 1.1e-11 74.3 228 31.1
MD03G1184900 Malus domestica HOM05D005871 ORTHO05D003654 1.1e-11 74.3 226 32.3
Gohir.D05G383100 Gossypium hirsutum HOM05D005871 ORTHO05D003654 1.5e-11 73.9 226 34.1
Gorai.009G449400 Gossypium raimondii HOM05D005871 ORTHO05D003654 1.5e-11 73.9 215 34.9
Duzib133G1309 Durio zibethinus HOM05D008806 ORTHO05D003654 2.5e-11 73.2 186 28.5
TWI39G0465 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 2.5e-11 73.2 233 31.8
Lj6g0021132 Lotus japonicus HOM05D005871 ORTHO05D003654 5.7e-11 72.0 203 29.6
QL08p004709 Quercus lobata HOM05D005871 ORTHO05D003654 1.3e-10 70.9 221 38.0
CiPaw.12G137100 Carya illinoinensis HOM05D005871 ORTHO05D003654 2.2e-10 70.1 223 31.4
Ciclev10016749m.g Citrus clementina HOM05D008806 ORTHO05D003654 2.8e-10 69.7 197 31.0
Prupe.4G241600 Prunus persica HOM05D005871 ORTHO05D003654 3.7e-10 69.3 217 32.7
Nn1g03208 Nelumbo nucifera HOM05D005871 ORTHO05D003654 4.8e-10 68.9 206 35.9
VMungo0540G0718 Vigna mungo HOM05D005871 ORTHO05D003654 4.8e-10 68.9 212 33.0
Gohir.D05G382900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 6.3e-10 68.6 206 27.2
DCAR_022606 Daucus carota HOM05D005871 ORTHO05D003654 1.4e-09 67.4 241 30.3
Duzib138G0120 Durio zibethinus HOM05D008806 ORTHO05D003654 3.1e-09 66.2 193 30.1
Gohir.D05G382950 Gossypium hirsutum HOM05D005871 ORTHO05D003654 3.1e-09 66.2 192 32.3
Gorai.009G449500 Gossypium raimondii HOM05D005871 ORTHO05D003654 3.1e-09 66.2 192 32.3
Thecc.01G195400 Theobroma cacao HOM05D008806 ORTHO05D003654 3.1e-09 66.2 193 29.0
Gohir.A07G191600 Gossypium hirsutum HOM05D008806 ORTHO05D003654 4.1e-09 65.9 188 32.4
Psat1g173400 Pisum sativum HOM05D005871 ORTHO05D003654 4.1e-09 65.9 205 28.3
Potri.001G366500 Populus trichocarpa HOM05D005871 ORTHO05D003654 4.1e-09 65.9 247 27.9
Medtr2g026565 Medicago truncatula HOM05D005871 ORTHO05D003654 5.3e-09 65.5 219 27.4
Sc16g0008000 Simmondsia chinensis HOM05D005871 ORTHO05D003654 6.9e-09 65.1 237 35.4
Gohir.D07G198000 Gossypium hirsutum HOM05D008806 ORTHO05D003654 9.1e-09 64.7 186 30.1
Gorai.001G221600 Gossypium raimondii HOM05D008806 ORTHO05D003654 9.1e-09 64.7 186 30.1
TAR626G0615 Trochodendron aralioides HOM05D005871 ORTHO05D003654 1.2e-08 64.3 205 30.7
AUR62017078 Chenopodium quinoa HOM05D005871 ORTHO05D003654 1.5e-08 63.9 177 37.9
Manes.03G140300 Manihot esculenta HOM05D005871 ORTHO05D003654 1.5e-08 63.9 250 28.0
Phvul.008G278200 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 1.5e-08 63.9 176 32.4
Atru.chr6.3383_Atru.chr6.3384 Acer truncatum HOM05D008806 ORTHO05D003654 2.0e-08 63.5 194 30.9
Glyma.18G078200 Glycine max HOM05D005871 ORTHO05D003654 2.0e-08 63.5 237 29.5
Nn1g07488 Nelumbo nucifera HOM05D005871 ORTHO05D003654 2.0e-08 63.5 182 31.9
Ah.04g166520 Amaranthus hybridus HOM05D005871 ORTHO05D003654 2.6e-08 63.2 234 28.6
Manes.03G140301 Manihot esculenta HOM05D005871 ORTHO05D003654 2.6e-08 63.2 244 27.0
CiPaw.11G202600 Carya illinoinensis HOM05D005871 ORTHO05D003654 4.5e-08 62.4 222 32.4
Glyma.08G328600 Glycine max HOM05D005871 ORTHO05D003654 4.5e-08 62.4 236 28.8
Gorai.001G221500 Gossypium raimondii HOM05D008806 ORTHO05D003654 4.5e-08 62.4 187 31.6
Ah.06g181330 Amaranthus hybridus HOM05D005871 ORTHO05D003654 5.9e-08 62.0 181 30.4
Hma1.2p1_0657F.1_g196840 Hydrangea macrophylla HOM05D005871 ORTHO05D003654 5.9e-08 62.0 218 27.5
Phvul.006G140600 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 5.9e-08 62.0 221 25.3
TPR.G35473 Trifolium pratense HOM05D005871 ORTHO05D003654 5.9e-08 62.0 203 35.0
QL06p003419 Quercus lobata HOM05D008806 ORTHO05D003654 7.7e-08 61.6 183 29.5
Actinidia02292 Actinidia chinensis HOM05D005871 ORTHO05D003654 1.3e-07 60.8 223 27.4
Gohir.A07G191701 Gossypium hirsutum HOM05D008806 ORTHO05D003654 1.3e-07 60.8 191 29.3
QL05p068166 Quercus lobata HOM05D005871 ORTHO05D003654 1.3e-07 60.8 173 30.6
Gohir.D07G197900 Gossypium hirsutum HOM05D008806 ORTHO05D003654 1.7e-07 60.5 187 34.2
Atru.chr2.3672 Acer truncatum HOM05D005871 ORTHO05D003654 2.2e-07 60.1 258 31.8
Lalb_Chr04g0247911 Lupinus albus HOM05D005871 ORTHO05D003654 2.2e-07 60.1 229 29.7
Lalb_Chr18g0057151 Lupinus albus HOM05D005871 ORTHO05D003654 2.2e-07 60.1 211 28.0
Phvul.006G056300 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 2.2e-07 60.1 226 31.0
Lsat_1_v5_gn_7_13241 Lactuca sativa HOM05D005871 ORTHO05D003654 2.9e-07 59.7 203 29.1
FAN05G0544 Fragaria x ananassa HOM05D008806 ORTHO05D003654 3.8e-07 59.3 163 32.5
Eucgr.F02056 Eucalyptus grandis HOM05D005871 ORTHO05D003654 5.0e-07 58.9 247 30.0
Psat0s4683g0040 Pisum sativum HOM05D005871 ORTHO05D003654 5.0e-07 58.9 226 29.6
ClCG09G021220 Citrullus lanatus HOM05D005871 ORTHO05D003654 6.5e-07 58.5 157 39.5
Aqoxy1G04240 Aquilegia oxysepala HOM05D005871 ORTHO05D003654 8.5e-07 58.2 163 33.1
Cpa.g.sc1092.4 Carica papaya HOM05D005871 ORTHO05D003654 8.5e-07 58.2 187 36.4
PGR083G2866 Punica granatum HOM05D005871 ORTHO05D003654 8.5e-07 58.2 217 31.3
TPR.G8596 Trifolium pratense HOM05D005871 ORTHO05D003654 8.5e-07 58.2 196 30.1
VMungo0540G2170 Vigna mungo HOM05D005871 ORTHO05D003654 1.1e-06 57.8 225 36.0
QL08p028006 Quercus lobata HOM05D008806 ORTHO05D003654 1.4e-06 57.4 192 27.6
Thecc.06G238200 Theobroma cacao HOM05D005871 ORTHO05D003654 1.4e-06 57.4 239 27.2
TWI38G1492 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 1.9e-06 57.0 201 28.9
Glyma.02G299500 Glycine max HOM05D005871 ORTHO05D003654 2.5e-06 56.6 242 28.9
SalBow1G1270 Salvia bowleyana HOM05D005871 ORTHO05D003654 2.5e-06 56.6 189 30.2
FAN09G0572 Fragaria x ananassa HOM05D008806 ORTHO05D003654 3.2e-06 56.2 160 28.8
CiPaw.09G107300 Carya illinoinensis HOM05D005871 ORTHO05D003654 5.5e-06 55.5 208 27.4
Lj6g0021470 Lotus japonicus HOM05D005871 ORTHO05D003654 5.5e-06 55.5 240 29.6
CANSAT11G0434 Cannabis sativa HOM05D005871 ORTHO05D003654 7.2e-06 55.1 58 53.4
CsaV3_7G015020 Cucumis sativus L. HOM05D005871 ORTHO05D003654 7.2e-06 55.1 196 29.1
Glyma.09G012800 Glycine max HOM05D005871 ORTHO05D003654 7.2e-06 55.1 220 34.5
Prupe.3G198500 Prunus persica HOM05D008806 ORTHO05D003654 7.2e-06 55.1 190 34.2
Sed0014857 Sechium edule HOM05D005871 ORTHO05D003654 7.2e-06 55.1 222 29.7


User provided reference genes

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