Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25483 Brassica carinata HOM05D000891 ORTHO05D027360 2.1e-36 155.2 81 100.0
BcaB04g18745 Brassica carinata HOM05D000891 ORTHO05D000761 4.6e-23 110.9 81 72.8
BcaC05g29206 Brassica carinata HOM05D049981 ORTHO05D027360 1.7e-22 109.0 63 88.9
C05p54790 Brassica napus HOM05D049981 ORTHO05D027360 1.7e-22 109.0 63 88.9
BcaC01g04016 Brassica carinata HOM05D000891 ORTHO05D000761 2.1e-20 102.1 72 76.4
BolC3t16891H Brassica oleracea HOM05D000891 ORTHO05D000761 2.1e-20 102.1 72 76.4
AL3G24900 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 7.5e-18 93.6 69 75.4
A03p38070 Brassica napus HOM05D000891 ORTHO05D000761 3.5e-15 84.7 64 73.4
BraA03t12960Z Brassica rapa HOM05D000891 ORTHO05D000761 3.5e-15 84.7 64 73.4
Aa31LG8G360 Aethionema arabicum HOM05D000891 ORTHO05D000761 6.0e-15 84.0 68 64.7
Sp3g11330 Schrenkiella parvula HOM05D000891 ORTHO05D000761 7.8e-15 83.6 59 76.3
Aa31LG10G290 Aethionema arabicum HOM05D000891 ORTHO05D000761 2.3e-14 82.0 72 61.1
C01p51930 Brassica napus HOM05D000891 ORTHO05D000761 2.3e-14 82.0 61 75.4
BolC1t05140H Brassica oleracea HOM05D000891 ORTHO05D000761 2.3e-14 82.0 61 75.4
BraA01t04074Z Brassica rapa HOM05D000891 ORTHO05D000761 3.9e-14 81.3 61 73.8
THA.LOC104810572 Tarenaya hassleriana HOM05D000891 ORTHO05D000761 3.9e-14 81.3 71 56.3
A01p40390 Brassica napus HOM05D000891 ORTHO05D000761 6.6e-14 80.5 61 73.8
BcaC08g44226 Brassica carinata HOM05D000891 ORTHO05D000761 3.3e-13 78.2 79 51.9
C06p16280 Brassica napus HOM05D000891 ORTHO05D000761 3.3e-13 78.2 79 51.9
BolC6t36828H Brassica oleracea HOM05D000891 ORTHO05D000761 3.3e-13 78.2 79 51.9
BcaB02g10792 Brassica carinata HOM05D000891 ORTHO05D000761 7.3e-13 77.0 73 56.2
Thhalv10020883m.g Eutrema salsugineum HOM05D000891 ORTHO05D000761 9.5e-13 76.6 51 82.4
A05p17250 Brassica napus HOM05D000891 ORTHO05D000761 2.1e-12 75.5 73 53.4
Manes.16G016000 Manihot esculenta HOM05D000891 ORTHO05D000761 4.7e-12 74.3 77 50.6
Atru.chr10.2083 Acer truncatum HOM05D000891 ORTHO05D000761 6.2e-12 73.9 80 50.0
BraA05t20624Z Brassica rapa HOM05D000891 ORTHO05D000761 8.1e-12 73.6 72 52.8
VMungo0251G3555 Vigna mungo HOM05D000891 ORTHO05D000761 5.2e-11 70.9 80 50.0
Ciclev10015628m.g Citrus clementina HOM05D000891 ORTHO05D000761 8.9e-11 70.1 80 46.2
AT3G13160 Arabidopsis thaliana HOM05D000891 ORTHO05D000761 1.2e-10 69.7 53 75.5
TWI38G1234 Tripterygium wilfordii HOM05D000891 ORTHO05D000761 1.2e-10 69.7 79 45.6
Lj2P276T41 Lonicera japonica HOM05D000891 ORTHO05D000761 1.5e-10 69.3 80 45.0
FvH4_3g03070 Fragaria vesca HOM05D000891 ORTHO05D000761 2.0e-10 68.9 80 45.0
Actinidia26964 Actinidia chinensis HOM05D000891 ORTHO05D000761 2.6e-10 68.6 72 48.6
AUR62044184 Chenopodium quinoa HOM05D000891 ORTHO05D000761 5.8e-10 67.4 74 47.3
Cfa000285 Carpinus fangiana HOM05D000891 ORTHO05D000761 7.5e-10 67.0 80 43.8
RcHm_v2.0_Chr5g0004781 Rosa chinensis HOM05D000891 ORTHO05D000761 7.5e-10 67.0 70 51.4
Dinv17858 Davidia involucrata HOM05D000891 ORTHO05D000761 9.9e-10 66.6 74 47.3
FvH4_3g03160 Fragaria vesca HOM05D000891 ORTHO05D000761 1.3e-09 66.2 72 48.6
Cfa000288 Carpinus fangiana HOM05D000891 ORTHO05D027360 1.7e-09 65.9 74 47.3
Duzib235G0069 Durio zibethinus HOM05D000891 ORTHO05D000761 1.7e-09 65.9 72 47.2
Thecc.06G206400 Theobroma cacao HOM05D000891 ORTHO05D000761 2.9e-09 65.1 72 44.4
Phvul.002G219400 Phaseolus vulgaris HOM05D000891 ORTHO05D000761 3.7e-09 64.7 80 45.0
Cfa000291 Carpinus fangiana HOM05D000891 ORTHO05D000761 4.9e-09 64.3 79 40.5
FAN21G3318 Fragaria x ananassa HOM05D000891 ORTHO05D000761 4.9e-09 64.3 80 42.5
FAN25G2188 Fragaria x ananassa HOM05D000891 ORTHO05D000761 4.9e-09 64.3 72 45.8
Carub.0003s1250 Capsella rubella HOM05D000891 ORTHO05D000761 6.4e-09 63.9 53 69.8
Rhsim13G0163200 Rhododendron simsii HOM05D000891 ORTHO05D000761 8.3e-09 63.5 72 43.1
Sed0024534 Sechium edule HOM05D000891 ORTHO05D000761 1.1e-08 63.2 60 48.3
FvH4_3g03080 Fragaria vesca HOM05D000891 ORTHO05D000761 1.4e-08 62.8 83 42.2
Sabra04G0016900 Salix brachista HOM05D000891 ORTHO05D000761 1.4e-08 62.8 62 45.2
Haze_06653 Corylus avellana HOM05D000891 ORTHO05D000761 1.9e-08 62.4 75 41.3
CiPaw.16G021100 Carya illinoinensis HOM05D000891 ORTHO05D000761 2.4e-08 62.0 77 42.9
Lalb_Chr09g0327201 Lupinus albus HOM05D000891 ORTHO05D000761 5.4e-08 60.8 72 45.8
Haze_06643 Corylus avellana HOM05D000891 ORTHO05D000761 9.2e-08 60.1 64 42.2
Lalb_Chr05g0218021 Lupinus albus HOM05D000891 ORTHO05D000761 9.2e-08 60.1 80 40.0
Sabra11G0025600 Salix brachista HOM05D000891 ORTHO05D000761 1.2e-07 59.7 73 39.7
Glyma.08G061500 Glycine max HOM05D000891 ORTHO05D000761 1.6e-07 59.3 77 39.0
Ca_18462_v3 Cicer arietinum L. HOM05D000891 ORTHO05D000761 3.5e-07 58.2 77 44.2
Ca_29634_v3 Cicer arietinum L. HOM05D000891 ORTHO05D000761 3.5e-07 58.2 77 44.2
DCAR_004172 Daucus carota HOM05D000891 ORTHO05D000761 3.5e-07 58.2 72 37.5
Haze_06642 Corylus avellana HOM05D000891 ORTHO05D000761 4.6e-07 57.8 66 47.0
Eucgr.E03611 Eucalyptus grandis HOM05D000891 ORTHO05D000761 4.6e-07 57.8 72 44.4
Gohir.D06G125900 Gossypium hirsutum HOM05D000891 ORTHO05D000761 4.6e-07 57.8 60 48.3
Gorai.010G146600 Gossypium raimondii HOM05D000891 ORTHO05D000761 6.0e-07 57.4 60 48.3
Cc02_g11880 Coffea canephora HOM05D000891 ORTHO05D000761 3.9e-06 54.7 60 45.0
Haze_06658 Corylus avellana HOM05D000891 ORTHO05D000761 5.1e-06 54.3 60 41.7
Potri.011G032500 Populus trichocarpa HOM05D000891 ORTHO05D000761 5.1e-06 54.3 70 41.4
AUR62012568 Chenopodium quinoa HOM05D000891 ORTHO05D000761 6.6e-06 53.9 60 48.3
CiPaw.10G113500 Carya illinoinensis HOM05D000891 ORTHO05D000761 8.6e-06 53.5 61 50.8
Nitab4.5_0005140g0030 Nicotiana tabacum HOM05D000891 ORTHO05D000761 8.6e-06 53.5 63 46.0
Peaxi162Scf00781g00021 Petunia axillaris HOM05D000891 ORTHO05D000761 8.6e-06 53.5 63 44.4
Potri.011G032400 Populus trichocarpa HOM05D000891 ORTHO05D000761 8.6e-06 53.5 69 40.6


User provided reference genes

Program Settings