Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 6.8e-54 213.8 110 100.0
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 2.8e-47 191.8 112 92.9
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 8.3e-44 180.3 97 93.8
BcaC01g04005 Brassica carinata HOM05D006736 ORTHO05D008459 3.0e-41 171.8 118 80.5
A03p38090 Brassica napus HOM05D006736 ORTHO05D008459 3.0e-41 171.8 118 80.5
C03p46220 Brassica napus HOM05D006736 ORTHO05D008459 3.0e-41 171.8 118 80.5
BolC3t16893H Brassica oleracea HOM05D006736 ORTHO05D008459 3.0e-41 171.8 118 80.5
BraA03t12962Z Brassica rapa HOM05D006736 ORTHO05D008459 3.0e-41 171.8 118 80.5
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 9.5e-40 166.8 118 80.5
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 8.0e-39 163.7 115 80.9
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 1.2e-37 159.8 114 79.8
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 1.4e-35 152.9 107 77.6
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 4.1e-35 151.4 110 77.3
BcaB04g18747 Brassica carinata HOM05D006736 ORTHO05D008459 9.2e-35 150.2 110 74.5
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 1.7e-33 146.0 113 73.5
Aa31LG8G450 Aethionema arabicum HOM05D006736 ORTHO05D008459 7.8e-26 120.6 81 76.5
THA.LOC104822717 Tarenaya hassleriana HOM05D006736 ORTHO05D008459 4.7e-23 111.3 118 61.0
C05p54700 Brassica napus HOM05D003402 ORTHO05D003939 6.9e-14 80.9 53 86.8
BraA05t22435Z Brassica rapa HOM05D003402 ORTHO05D003939 1.2e-13 80.1 55 83.6
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 2.9e-12 75.5 97 46.4
A05p36350 Brassica napus HOM05D003402 ORTHO05D003939 4.9e-12 74.7 57 77.2
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 3.5e-10 68.6 102 46.1
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 1.0e-09 67.0 104 44.2
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 2.3e-09 65.9 71 47.9
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 3.9e-09 65.1 76 53.9
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 3.9e-09 65.1 98 41.8
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 5.1e-09 64.7 58 58.6
TAR624G0725 Trochodendron aralioides HOM05D008067 ORTHO05D010226 5.1e-09 64.7 69 49.3
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 6.6e-09 64.3 98 46.9
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 8.7e-09 63.9 103 42.7
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 8.7e-09 63.9 96 45.8
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 1.1e-08 63.5 103 44.7
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 1.1e-08 63.5 47 68.1
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.5e-08 63.2 98 45.9
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 1.5e-08 63.2 98 45.9
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 1.9e-08 62.8 51 60.8
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 2.5e-08 62.4 48 66.7
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 3.3e-08 62.0 47 63.8
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 3.3e-08 62.0 101 39.6
PSO754G0004 Papaver somniferum HOM05D007247 ORTHO05D009208 3.3e-08 62.0 67 49.3
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 3.3e-08 62.0 51 64.7
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 4.3e-08 61.6 81 48.1
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 5.6e-08 61.2 71 47.9
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 5.6e-08 61.2 71 47.9
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 5.6e-08 61.2 69 53.6
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 9.6e-08 60.5 47 63.8
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 9.6e-08 60.5 47 63.8
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 9.6e-08 60.5 54 53.7
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 9.6e-08 60.5 51 60.8
PSO063G6114 Papaver somniferum HOM05D007247 ORTHO05D009208 9.6e-08 60.5 67 47.8
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 9.6e-08 60.5 99 43.4
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 9.6e-08 60.5 71 49.3
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 9.6e-08 60.5 46 71.7
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.6e-07 59.7 80 48.8
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.6e-07 59.7 80 48.8
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.6e-07 59.7 47 63.8
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 1.6e-07 59.7 47 63.8
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 1.6e-07 59.7 47 63.8
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 2.1e-07 59.3 105 40.0
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 2.1e-07 59.3 46 63.0
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 2.8e-07 58.9 54 55.6
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 3.6e-07 58.5 99 40.4
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 3.6e-07 58.5 55 54.5
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 4.8e-07 58.2 80 47.5
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 4.8e-07 58.2 80 46.2
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 4.8e-07 58.2 83 44.6
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 6.2e-07 57.8 109 38.5
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 6.2e-07 57.8 52 59.6
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 6.2e-07 57.8 74 47.3
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 6.2e-07 57.8 106 39.6
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 8.1e-07 57.4 71 46.5
MD02G1048100 Malus domestica HOM05D008067 ORTHO05D010226 8.1e-07 57.4 58 48.3
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 1.1e-06 57.0 62 45.2
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 1.1e-06 57.0 71 46.5
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 1.1e-06 57.0 71 46.5
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 1.1e-06 57.0 99 36.4
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 1.1e-06 57.0 54 55.6
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 1.1e-06 57.0 46 60.9
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 1.4e-06 56.6 99 38.4
Haze_25708 Corylus avellana HOM05D008067 ORTHO05D010226 1.4e-06 56.6 53 54.7
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 1.4e-06 56.6 76 44.7
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 1.8e-06 56.2 71 42.3
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 1.8e-06 56.2 41 70.7
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 1.8e-06 56.2 46 60.9
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 1.8e-06 56.2 101 42.6
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.4e-06 55.8 80 46.2
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 3.1e-06 55.5 104 42.3
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 3.1e-06 55.5 75 46.7
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 3.1e-06 55.5 71 45.1
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 4.0e-06 55.1 47 59.6
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 5.3e-06 54.7 109 38.5
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 5.3e-06 54.7 46 58.7
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 5.3e-06 54.7 102 39.2
Thecc.09G111500 Theobroma cacao HOM05D008067 ORTHO05D010226 5.3e-06 54.7 69 43.5
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 5.3e-06 54.7 95 40.0
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 6.9e-06 54.3 69 47.8
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 9.0e-06 53.9 105 41.0
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 9.0e-06 53.9 108 38.9
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 9.0e-06 53.9 89 40.4
Prupe.7G230000 Prunus persica HOM05D008067 ORTHO05D010226 9.0e-06 53.9 61 47.5
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 9.0e-06 53.9 51 54.9
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 9.0e-06 53.9 51 54.9


User provided reference genes

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