Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25475 Brassica carinata HOM05D007771 ORTHO05D009850 1.1e-33 146.0 69 100.0
A05p36330 Brassica napus HOM05D007771 ORTHO05D009850 7.3e-30 133.3 67 94.0
BcaC05g29197 Brassica carinata HOM05D007771 ORTHO05D009850 2.3e-28 128.3 67 92.5
C05p54690 Brassica napus HOM05D007771 ORTHO05D009850 2.3e-28 128.3 67 92.5
BolC5t34139H Brassica oleracea HOM05D007771 ORTHO05D009850 2.3e-28 128.3 67 92.5
BraA05t22434Z Brassica rapa HOM05D007771 ORTHO05D009850 1.2e-27 125.9 67 91.0
Thhalv10022324m.g Eutrema salsugineum HOM05D007771 ORTHO05D009850 2.9e-26 121.3 70 82.9
AT3G13275 Arabidopsis thaliana HOM05D007771 ORTHO05D009850 6.4e-26 120.2 64 85.9
Sp3g11480 Schrenkiella parvula HOM05D007771 ORTHO05D009850 6.4e-26 120.2 70 84.3
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 1.1e-25 119.4 64 85.9
BolC3t16896H Brassica oleracea HOM05D007771 ORTHO05D009850 1.9e-25 118.6 64 84.4
AL3G25100 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 2.4e-25 118.2 64 85.9
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 4.1e-25 117.5 68 80.9
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 4.1e-25 117.5 68 80.9
Carub.0003s1266 Capsella rubella HOM05D007771 ORTHO05D009850 5.4e-25 117.1 64 84.4
C03p46260 Brassica napus HOM05D007771 ORTHO05D009850 9.2e-25 116.3 64 82.8
BolC1t05126H Brassica oleracea HOM05D007771 ORTHO05D009850 1.6e-24 115.5 67 85.1
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 6.6e-23 110.2 66 81.8
CARHR087900 Cardamine hirsuta HOM05D007771 ORTHO05D009850 6.6e-23 110.2 71 77.5
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 4.7e-21 104.0 57 86.0
AL1G63820 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 8.9e-20 99.8 63 73.0
BcaB04g16929 Brassica carinata HOM05D007771 ORTHO05D009850 8.9e-20 99.8 63 69.8
BraA08t32092Z Brassica rapa HOM05D007771 ORTHO05D009850 1.5e-19 99.0 63 71.4
BcaC01g01562 Brassica carinata HOM05D007771 ORTHO05D009850 2.0e-19 98.6 63 69.8
A08p00340 Brassica napus HOM05D007771 ORTHO05D009850 2.0e-19 98.6 63 69.8
C03p93160 Brassica napus HOM05D007771 ORTHO05D009850 2.0e-19 98.6 63 69.8
BolC3t21615H Brassica oleracea HOM05D007771 ORTHO05D009850 2.0e-19 98.6 63 69.8
CARHR045420 Cardamine hirsuta HOM05D007771 ORTHO05D009850 1.4e-17 92.4 69 65.2
Carub.0001s4425 Capsella rubella HOM05D007771 ORTHO05D009850 4.6e-16 87.4 63 68.3
arahy.Tifrunner.gnm1.ann1.0J0D7Z Arachis hypogaea HOM05D007771 ORTHO05D009850 1.9e-14 82.0 65 69.2
Gohir.D05G386700 Gossypium hirsutum HOM05D007771 ORTHO05D009850 2.5e-14 81.6 54 70.4
arahy.Tifrunner.gnm1.ann1.29L1CF Arachis hypogaea HOM05D007771 ORTHO05D009850 5.6e-14 80.5 65 69.2
Cfa016941 Carpinus fangiana HOM05D007771 ORTHO05D009850 1.6e-13 79.0 65 66.2
Eucgr.F03660 Eucalyptus grandis HOM05D007771 ORTHO05D009850 2.8e-13 78.2 67 59.7
Manes.02G224000 Manihot esculenta HOM05D007771 ORTHO05D009850 2.8e-13 78.2 49 73.5
Thecc.07G005300 Theobroma cacao HOM05D007771 ORTHO05D009850 3.6e-13 77.8 56 67.9
Cc05_g15490 Coffea canephora HOM05D007771 ORTHO05D009850 8.1e-13 76.6 58 67.2
Glyma.02G303200 Glycine max HOM05D007771 ORTHO05D009850 8.1e-13 76.6 68 64.7
Glyma.14G010700 Glycine max HOM05D007771 ORTHO05D009850 2.4e-12 75.1 55 72.7
MD03G1039700 Malus domestica HOM05D007771 ORTHO05D009850 3.1e-12 74.7 68 58.8
Potri.001G469401 Populus trichocarpa HOM05D007771 ORTHO05D009850 3.1e-12 74.7 71 60.6
arahy.Tifrunner.gnm1.ann1.YJMT2M Arachis hypogaea HOM05D007771 ORTHO05D009850 4.0e-12 74.3 69 63.8
ClCG10G004130 Citrullus lanatus HOM05D007771 ORTHO05D009850 5.3e-12 73.9 55 70.9
LjContig00081g0001678 Lotus japonicus HOM05D007771 ORTHO05D009850 9.0e-12 73.2 68 64.7
QL08p001590 Quercus lobata HOM05D007771 ORTHO05D009850 9.0e-12 73.2 55 72.7
MELO3C014083.2 Cucumis melo HOM05D007771 ORTHO05D009850 2.6e-11 71.6 54 70.4
HanXRQChr03g0077771 Helianthus annuus HOM05D007771 ORTHO05D009850 2.6e-11 71.6 49 63.3
HanXRQChr13g0409141 Helianthus annuus HOM05D007771 ORTHO05D009850 2.6e-11 71.6 46 65.2
Phvul.008G282400 Phaseolus vulgaris HOM05D007771 ORTHO05D009850 2.6e-11 71.6 54 68.5
Duzib268G1197 Durio zibethinus HOM05D007771 ORTHO05D009850 5.8e-11 70.5 56 62.5
Medtr5g096780 Medicago truncatula HOM05D007771 ORTHO05D009850 5.8e-11 70.5 65 60.0
TWI39G0067 Tripterygium wilfordii HOM05D007771 ORTHO05D009850 5.8e-11 70.5 47 72.3
MD11G1040400 Malus domestica HOM05D007771 ORTHO05D009850 9.9e-11 69.7 68 55.9
Sed0026400 Sechium edule HOM05D007771 ORTHO05D009850 1.3e-10 69.3 65 56.9
Sopen07g034140 Solanum pennellii HOM05D007771 ORTHO05D009850 1.3e-10 69.3 68 54.4
Lalb_Chr17g0349031 Lupinus albus HOM05D007771 ORTHO05D009850 1.7e-10 68.9 64 60.9
Potri.005G061200 Populus trichocarpa HOM05D007771 ORTHO05D009850 1.7e-10 68.9 67 55.2
TPR.G1243 Trifolium pratense HOM05D007771 ORTHO05D009850 1.7e-10 68.9 69 59.4
Potri.007G107500 Populus trichocarpa HOM05D007771 ORTHO05D009850 2.9e-10 68.2 55 60.0
Potri.011G166250 Populus trichocarpa HOM05D007771 ORTHO05D009850 2.9e-10 68.2 69 55.1
Migut.H01728 Erythranthe guttata HOM05D007771 ORTHO05D009850 3.8e-10 67.8 55 58.2
TAR627G1191 Trochodendron aralioides HOM05D007771 ORTHO05D009850 3.8e-10 67.8 67 61.2
CiPaw.11G208800 Carya illinoinensis HOM05D007771 ORTHO05D009850 4.9e-10 67.4 52 67.3
Manes.05G206300 Manihot esculenta HOM05D007771 ORTHO05D009850 4.9e-10 67.4 43 69.8
PGR083G2136 Punica granatum HOM05D007771 ORTHO05D009850 6.4e-10 67.0 46 71.7
EL10Ac4g07508 Beta vulgaris HOM05D007771 ORTHO05D009850 1.1e-09 66.2 48 60.4
Gohir.A04G003000 Gossypium hirsutum HOM05D007771 ORTHO05D009850 1.1e-09 66.2 47 68.1
Gorai.009G453400 Gossypium raimondii HOM05D007771 ORTHO05D009850 1.1e-09 66.2 47 68.1
PGSC0003DMG400022153 Solanum tuberosum HOM05D007771 ORTHO05D009850 1.1e-09 66.2 69 50.7
Atru.chr2.3846 Acer truncatum HOM05D007771 ORTHO05D009850 1.9e-09 65.5 68 57.4
MBI15_g00878_MAGBIO Magnolia biondii HOM05D007771 ORTHO05D009850 1.9e-09 65.5 67 55.2
CANSAT11G2411 Cannabis sativa HOM05D007771 ORTHO05D009850 3.2e-09 64.7 41 73.2
RcHm_v2.0_Chr5g0075191 Rosa chinensis HOM05D007771 ORTHO05D009850 3.2e-09 64.7 57 59.6
PGSC0003DMG400014434 Solanum tuberosum HOM05D007771 ORTHO05D009850 3.2e-09 64.7 40 65.0
Medtr5g096760 Medicago truncatula HOM05D007771 ORTHO05D009850 4.2e-09 64.3 42 71.4
FAN11G2649 Fragaria x ananassa HOM05D007771 ORTHO05D009850 5.4e-09 63.9 40 75.0
COL.COLO4_07761 Corchorus olitorius HOM05D007771 ORTHO05D009850 7.1e-09 63.5 43 65.1
CAN.G623.52 Capsicum annuum HOM05D007771 ORTHO05D009850 1.6e-08 62.4 38 76.3
Gohir.D13G133100 Gossypium hirsutum HOM05D007771 ORTHO05D009850 2.1e-08 62.0 69 53.6
Solyc07g065940.1 Solanum lycopersicum HOM05D007771 ORTHO05D009850 2.1e-08 62.0 62 51.6
Ciclev10010110m.g Citrus clementina HOM05D007771 ORTHO05D009850 3.5e-08 61.2 55 58.2
Gorai.013G149400 Gossypium raimondii HOM05D007771 ORTHO05D009850 3.5e-08 61.2 69 53.6
Gohir.A13G130128 Gossypium hirsutum HOM05D007771 ORTHO05D009850 6.0e-08 60.5 70 54.3
Nn1g08434 Nelumbo nucifera HOM05D007771 ORTHO05D009850 7.9e-08 60.1 44 63.6
EL10Ac4g09984 Beta vulgaris HOM05D007771 ORTHO05D009850 3.9e-07 57.8 36 80.6
DCAR_013772 Daucus carota HOM05D007771 ORTHO05D009850 1.5e-06 55.8 52 53.8


User provided reference genes

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