Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 2.5e-136 488.8 252 100.0
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 2.5e-128 462.2 252 95.6
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 5.2e-126 454.5 249 95.2
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 8.9e-126 453.8 249 94.8
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 5.8e-125 451.1 249 94.4
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 6.4e-124 447.6 246 94.7
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 3.6e-119 431.8 250 90.8
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 2.4e-118 429.1 250 89.6
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 9.2e-115 417.2 248 89.9
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 8.7e-113 410.6 252 86.5
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 9.0e-110 400.6 246 86.6
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.5e-104 383.3 255 80.0
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 1.4e-91 340.1 238 76.1
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 3.9e-89 332.0 232 76.3
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 8.7e-89 330.9 234 73.1
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 3.3e-88 328.9 238 72.7
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 8.2e-87 324.3 245 71.0
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.2e-85 320.5 238 72.7
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 5.8e-85 318.2 238 71.4
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 5.8e-85 318.2 238 71.4
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 7.6e-85 317.8 242 72.7
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 2.1e-82 309.7 230 72.6
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 6.0e-82 308.1 248 71.8
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 3.9e-81 305.4 238 70.6
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 5.1e-81 305.1 230 71.7
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 5.1e-81 305.1 230 71.7
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 1.6e-79 300.1 234 70.5
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 3.9e-73 278.9 224 64.7
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 7.4e-72 274.6 225 64.9
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.8e-70 270.0 235 60.9
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 4.1e-70 268.9 217 63.6
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 5.3e-70 268.5 217 62.7
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 9.1e-70 267.7 217 62.7
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 1.5e-69 266.9 223 62.8
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 2.6e-69 266.2 220 62.7
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 4.5e-69 265.4 219 62.1
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 5.9e-69 265.0 217 62.2
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 7.7e-69 264.6 232 62.5
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 7.7e-69 264.6 226 61.1
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 1.0e-68 264.2 228 59.6
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 1.3e-68 263.8 239 61.5
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 8.5e-68 261.2 236 61.0
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.1e-67 260.8 227 60.4
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 1.9e-67 260.0 219 63.5
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 4.2e-67 258.8 227 59.9
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 1.2e-66 257.3 226 61.9
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 1.2e-66 257.3 230 60.9
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 2.7e-66 256.1 216 63.9
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 3.6e-66 255.8 255 58.8
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 4.7e-66 255.4 237 58.6
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 1.8e-65 253.4 230 60.0
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 1.8e-65 253.4 223 59.6
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 3.9e-65 252.3 234 58.1
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 5.1e-65 251.9 225 59.6
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 5.1e-65 251.9 231 60.2
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 6.7e-65 251.5 231 60.2
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 1.1e-64 250.8 222 59.0
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 1.5e-64 250.4 234 60.3
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 1.5e-64 250.4 224 59.8
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 3.3e-64 249.2 250 54.4
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 5.7e-64 248.4 225 59.6
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 5.7e-64 248.4 243 57.2
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 5.7e-64 248.4 248 55.2
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 7.4e-64 248.1 249 56.6
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 2.2e-63 246.5 225 60.0
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 2.2e-63 246.5 237 58.2
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 3.7e-63 245.7 236 58.1
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 6.3e-63 245.0 227 59.0
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 8.2e-63 244.6 219 58.4
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 8.2e-63 244.6 264 53.4
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.1e-62 244.2 225 55.6
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.4e-62 243.8 213 60.1
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.8e-62 243.4 236 57.6
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 2.4e-62 243.0 221 59.7
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 7.0e-62 241.5 243 56.4
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 7.7e-61 238.0 214 61.2
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.0e-60 237.7 142 87.3
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 1.3e-60 237.3 224 58.5
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.7e-60 236.9 227 57.7
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 2.2e-60 236.5 216 59.3
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 3.8e-60 235.7 227 56.8
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 8.5e-60 234.6 220 60.5
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 2.5e-59 233.0 153 71.2
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 4.2e-59 232.3 195 62.1
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 5.5e-59 231.9 235 56.2
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 2.7e-58 229.6 246 52.8
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 4.7e-58 228.8 256 50.0
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 6.1e-58 228.4 150 72.0
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.0e-57 227.6 266 51.1
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 1.4e-57 227.3 205 61.0
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.8e-57 226.9 221 56.1
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 3.0e-57 226.1 173 61.3
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 3.9e-57 225.7 262 47.7
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 3.9e-57 225.7 237 54.0
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 8.8e-57 224.6 222 55.4
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 5.7e-56 221.9 236 51.3
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 9.7e-56 221.1 281 47.7
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 9.7e-56 221.1 208 54.8
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 2.8e-55 219.5 228 51.3
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 2.0e-53 213.4 212 58.0
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 2.9e-52 209.5 236 51.3
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 8.5e-52 208.0 166 61.4
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.1e-51 207.6 165 61.8
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 3.0e-49 199.5 230 48.7
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 4.0e-49 199.1 152 63.8
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 7.5e-48 194.9 133 66.9
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 3.7e-47 192.6 144 63.2
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 1.5e-43 180.6 227 48.0
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 4.7e-42 175.6 139 60.4
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 6.1e-42 175.3 137 62.0
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 1.4e-41 174.1 142 57.7
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 3.4e-40 169.5 193 51.8
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 2.2e-39 166.8 178 50.6
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 8.3e-39 164.9 228 47.4
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 1.2e-37 161.0 134 55.2
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 2.0e-37 160.2 161 55.9
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 7.7e-37 158.3 113 64.6
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 5.5e-35 152.1 133 54.9
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 5.0e-28 129.0 183 45.4
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 8.6e-28 128.3 76 73.7
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 8.6e-28 128.3 93 69.9
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 1.6e-26 124.0 92 66.3
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 6.1e-26 122.1 120 55.8
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 1.2e-21 107.8 139 41.0
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 7.3e-19 98.6 61 70.5
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 2.6e-16 90.1 74 59.5
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 4.1e-14 82.8 103 45.6
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 7.1e-14 82.0 54 70.4
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 2.7e-13 80.1 120 41.7
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 9.9e-08 61.6 126 28.6
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 4.9e-07 59.3 36 75.0
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 4.9e-07 59.3 219 28.8


User provided reference genes

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