Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 1.3e-35 152.5 77 100.0
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 1.1e-34 149.4 77 97.4
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 1.9e-34 148.7 77 96.1
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 1.9e-34 148.7 77 96.1
BcaC05g29084 Brassica carinata HOM05D007503 ORTHO05D009487 5.5e-34 147.1 77 96.1
C05p52900 Brassica napus HOM05D007503 ORTHO05D009487 5.5e-34 147.1 77 97.4
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 6.0e-33 143.7 77 92.2
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 1.0e-32 142.9 77 90.9
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 1.0e-32 142.9 77 90.9
BcaC09g48410 Brassica carinata HOM05D007503 ORTHO05D009487 2.3e-32 141.7 77 89.6
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 6.7e-32 140.2 77 89.6
Sp3g12730 Schrenkiella parvula HOM05D007503 ORTHO05D009487 8.7e-32 139.8 77 89.6
Carub.0003s1415 Capsella rubella HOM05D007503 ORTHO05D009487 4.3e-31 137.5 77 88.3
AT3G14430 Arabidopsis thaliana HOM05D007503 ORTHO05D009487 7.4e-31 136.7 77 88.3
CARHR089340 Cardamine hirsuta HOM05D007503 ORTHO05D009487 6.2e-30 133.7 77 85.7
AL3G26810 Arabidopsis lyrata HOM05D007503 ORTHO05D009487 8.1e-30 133.3 77 85.7
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 9.0e-29 129.8 77 84.4
THA.LOC104815587 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 5.8e-28 127.1 77 79.2
THA.LOC104822606 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 1.7e-27 125.6 77 76.6
Aa31LG8G1690 Aethionema arabicum HOM05D007503 ORTHO05D009487 2.9e-27 124.8 77 77.9
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 2.6e-20 101.7 69 68.1
Aa31LG10G1620 Aethionema arabicum HOM05D007503 ORTHO05D009487 3.8e-19 97.8 76 65.8
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 2.5e-18 95.1 70 70.0
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 3.2e-18 94.7 73 65.8
Thecc.09G340100 Theobroma cacao HOM05D007503 ORTHO05D009487 3.2e-18 94.7 77 61.0
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 4.2e-18 94.4 66 68.2
COL.COLO4_13441 Corchorus olitorius HOM05D007503 ORTHO05D009487 5.5e-18 94.0 78 59.0
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 5.5e-18 94.0 67 68.7
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 7.2e-18 93.6 66 71.2
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 9.3e-18 93.2 66 69.7
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 9.3e-18 93.2 77 62.3
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 2.7e-17 91.7 69 68.1
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 2.7e-17 91.7 69 68.1
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 2.7e-17 91.7 69 68.1
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 3.6e-17 91.3 64 70.3
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 3.6e-17 91.3 66 63.6
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 4.6e-17 90.9 71 63.4
Duzib211G0566 Durio zibethinus HOM05D007503 ORTHO05D009487 4.6e-17 90.9 80 57.5
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 4.6e-17 90.9 68 66.2
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 7.9e-17 90.1 78 60.3
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 1.0e-16 89.7 78 57.7
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 1.3e-16 89.4 69 66.7
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 1.3e-16 89.4 70 71.4
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 1.3e-16 89.4 70 71.4
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 1.8e-16 89.0 66 71.2
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 1.8e-16 89.0 76 60.5
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 3.0e-16 88.2 80 66.2
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 5.1e-16 87.4 64 60.9
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 6.7e-16 87.0 74 56.8
Gohir.A11G170200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 6.7e-16 87.0 80 55.0
Gohir.D11G177200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 6.7e-16 87.0 80 55.0
Gorai.007G189300 Gossypium raimondii HOM05D007503 ORTHO05D009487 6.7e-16 87.0 80 55.0
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 6.7e-16 87.0 73 63.0
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 6.7e-16 87.0 63 63.5
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 1.1e-15 86.3 70 68.6
MELO3C025073.2 Cucumis melo HOM05D007503 ORTHO05D009487 1.1e-15 86.3 75 53.3
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 1.1e-15 86.3 68 61.8
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 1.5e-15 85.9 67 59.7
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 1.5e-15 85.9 67 59.7
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 1.5e-15 85.9 58 72.4
ClCG01G008330 Citrullus lanatus HOM05D007503 ORTHO05D009487 2.5e-15 85.1 75 53.3
Eucgr.I00239 Eucalyptus grandis HOM05D007503 ORTHO05D009487 2.5e-15 85.1 61 65.6
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 2.5e-15 85.1 73 60.3
BcaC02g09481 Brassica carinata HOM05D007503 ORTHO05D009487 3.3e-15 84.7 46 95.7
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 3.3e-15 84.7 63 63.5
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 3.3e-15 84.7 64 60.9
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 3.3e-15 84.7 69 66.7
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 4.3e-15 84.3 68 58.8
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 4.3e-15 84.3 69 63.8
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 5.7e-15 84.0 68 58.8
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 5.7e-15 84.0 68 60.3
CsaV3_5G020250 Cucumis sativus L. HOM05D007503 ORTHO05D009487 7.4e-15 83.6 54 63.0
Cpa.g.c46349 Carica papaya HOM05D007503 ORTHO05D009487 9.7e-15 83.2 75 57.3
Cpa.g.sc44.91 Carica papaya HOM05D007503 ORTHO05D009487 9.7e-15 83.2 75 57.3
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 1.3e-14 82.8 77 55.8
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 1.6e-14 82.4 70 58.6
Sed0018329 Sechium edule HOM05D007503 ORTHO05D009487 2.2e-14 82.0 75 50.7
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 2.8e-14 81.6 61 62.3
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 4.8e-14 80.9 72 56.9
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 1.1e-13 79.7 58 69.0
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 1.4e-13 79.3 55 70.9
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 1.4e-13 79.3 66 56.1
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 2.4e-13 78.6 58 67.2
Os08g0528601 Oryza sativa ssp. japonica HOM05D007503 ORTHO05D009487 3.1e-13 78.2 62 64.5
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 4.1e-13 77.8 68 58.8
CDE05G2177 Ceratophyllum demersum HOM05D007503 ORTHO05D009487 1.5e-12 75.9 65 52.3
Sabra14G0077600 Salix brachista HOM05D007503 ORTHO05D009487 2.0e-12 75.5 66 56.1
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 3.4e-12 74.7 68 60.3
Pp3c11_25150 Physcomitrium patens HOM05D007503 ORTHO05D009487 7.7e-12 73.6 50 74.0
Zm00001eb175060 Zea mays HOM05D007503 ORTHO05D009487 7.7e-12 73.6 73 53.4
Sabra02G0134700 Salix brachista HOM05D007503 ORTHO05D009487 2.9e-11 71.6 73 45.2
Zm00001eb036330 Zea mays HOM05D007503 ORTHO05D009487 1.1e-10 69.7 65 53.8
Pp3c7_7140 Physcomitrium patens HOM05D007503 ORTHO05D009487 6.1e-09 63.9 50 64.0
HanXRQChr14g0445891 Helianthus annuus HOM05D007503 ORTHO05D009487 1.8e-08 62.4 71 52.1
Lsat_1_v5_gn_9_48861 Lactuca sativa HOM05D007503 ORTHO05D009487 5.1e-08 60.8 55 60.0
PGSC0003DMG400000976 Solanum tuberosum HOM05D007503 ORTHO05D009487 2.0e-07 58.9 47 74.5
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 2.8e-06 55.1 50 60.0
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 3.7e-06 54.7 50 62.0


User provided reference genes

Program Settings