Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 1.1e-176 623.2 316 100.0
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 2.3e-163 578.9 332 91.3
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 2.5e-162 575.5 332 91.0
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 2.8e-161 572.0 348 86.2
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 2.4e-160 568.9 358 84.6
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 7.9e-156 553.9 322 87.9
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 2.6e-151 538.9 322 84.2
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 3.8e-150 535.0 322 83.2
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 1.0e-147 526.9 322 82.0
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 2.3e-147 525.8 322 84.2
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 8.8e-147 523.9 323 83.6
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 8.8e-147 523.9 323 83.6
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 2.0e-146 522.7 322 81.7
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 2.7e-140 502.3 369 73.2
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 1.4e-139 500.0 324 79.0
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 3.7e-137 491.9 340 75.0
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 4.5e-119 431.8 323 67.5
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 3.6e-116 422.2 325 65.2
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 8.0e-116 421.0 324 64.5
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 8.9e-115 417.5 324 64.5
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 5.8e-114 414.8 324 63.9
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.9e-113 412.5 324 64.5
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 2.9e-113 412.5 324 65.1
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 3.7e-113 412.1 324 64.8
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 6.4e-113 411.4 324 64.5
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 6.4e-113 411.4 325 64.6
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 1.1e-112 410.6 329 64.4
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 2.4e-112 409.5 324 64.2
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.2e-112 409.1 324 63.6
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 1.6e-111 406.8 328 64.3
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 2.0e-111 406.4 325 62.8
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 4.6e-111 405.2 324 61.4
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 4.6e-111 405.2 324 62.7
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 6.0e-111 404.8 325 63.4
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.3e-110 403.7 324 62.0
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 3.0e-110 402.5 324 59.9
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 6.6e-110 401.4 324 62.0
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 8.6e-110 401.0 324 61.4
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 1.1e-109 400.6 326 63.5
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 1.1e-109 400.6 325 61.5
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 1.5e-109 400.2 364 55.5
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 4.3e-109 398.7 326 62.3
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 5.6e-109 398.3 324 62.3
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 5.6e-109 398.3 326 63.2
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 7.3e-109 397.9 324 63.3
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.6e-108 396.7 331 62.5
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.6e-108 396.7 324 62.0
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 2.1e-108 396.4 325 61.2
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 4.7e-108 395.2 326 63.2
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 6.2e-108 394.8 324 62.7
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 8.0e-108 394.4 325 60.9
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.1e-107 394.0 324 63.0
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.4e-107 393.7 324 62.7
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 5.2e-107 391.7 324 62.3
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 6.8e-107 391.3 324 62.7
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.6e-106 389.4 339 61.4
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 2.6e-106 389.4 326 62.0
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 7.5e-106 387.9 307 63.2
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 9.8e-106 387.5 338 58.9
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 4.9e-105 385.2 324 59.0
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 8.3e-105 384.4 324 59.3
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 3.2e-104 382.5 323 57.6
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 3.2e-104 382.5 324 59.3
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 9.2e-104 380.9 324 61.1
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 1.6e-103 380.2 324 59.9
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 1.0e-102 377.5 325 59.7
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 1.1e-101 374.0 393 52.4
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 3.3e-101 372.5 326 60.1
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 5.6e-101 371.7 325 60.9
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 5.6e-101 371.7 325 60.3
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 5.6e-101 371.7 324 56.5
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 7.3e-101 371.3 324 60.8
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.6e-100 370.2 324 58.3
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 2.1e-100 369.8 325 59.7
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 3.6e-100 369.0 324 58.0
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 6.2e-100 368.2 325 59.4
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 6.2e-100 368.2 324 58.6
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 6.2e-100 368.2 380 51.3
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 6.2e-100 368.2 324 56.8
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.8e-99 366.7 325 59.1
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 4.0e-99 365.5 364 52.5
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 1.2e-98 364.0 327 59.3
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 2.2e-97 359.8 326 56.7
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 2.2e-97 359.8 301 60.8
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 1.1e-96 357.5 324 54.6
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 4.1e-96 355.5 324 55.9
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 9.2e-96 354.4 324 55.6
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 1.2e-95 354.0 324 54.0
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.7e-95 352.8 315 58.1
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 4.6e-95 352.1 307 58.3
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 1.2e-92 344.0 208 85.1
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 1.8e-91 340.1 295 60.7
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 3.4e-90 335.9 309 56.3
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.9e-88 330.1 322 55.0
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 3.2e-88 329.3 316 57.3
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.2e-87 327.4 326 55.5
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 2.7e-87 326.2 328 52.1
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 3.5e-87 325.9 327 52.6
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.6e-87 325.5 301 57.5
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.0e-86 324.3 327 52.3
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 2.5e-85 319.7 363 48.5
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.6e-84 317.0 327 51.1
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.4e-83 313.9 325 51.1
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.8e-83 313.5 325 51.1
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 4.0e-83 312.4 325 49.2
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 1.5e-82 310.5 330 49.7
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 3.4e-82 309.3 325 49.5
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 1.4e-80 303.9 325 50.2
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 1.9e-80 303.5 327 48.9
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 5.4e-80 302.0 227 63.9
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 2.1e-79 300.1 362 45.9
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.7e-79 299.7 284 58.1
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 3.0e-78 296.2 249 58.6
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 4.8e-76 288.9 347 45.2
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.4e-75 287.3 268 54.1
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 7.6e-74 281.6 235 60.4
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.8e-73 279.3 311 52.7
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 2.1e-71 273.5 161 83.9
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.2e-66 257.7 301 47.5
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.5e-66 257.3 328 47.6
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 1.0e-62 244.6 208 62.0
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.5e-61 240.7 295 48.5
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 3.3e-61 239.6 316 44.9
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 7.4e-61 238.4 261 49.8
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 1.4e-56 224.2 324 40.7
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 9.3e-56 221.5 289 45.0
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.8e-54 217.2 166 65.1
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 5.3e-51 205.7 248 44.0
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 2.2e-49 200.3 121 80.2
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 6.7e-46 188.7 145 66.2
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 3.3e-45 186.4 182 54.9
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.3e-44 184.5 152 57.2
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 8.2e-44 181.8 256 41.8
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 3.4e-42 176.4 128 64.8
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 4.7e-39 166.0 165 55.8
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 1.8e-38 164.1 321 35.8
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 8.8e-38 161.8 154 53.9
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 1.1e-37 161.4 145 55.9
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 4.4e-37 159.5 321 34.3
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.2e-36 157.1 160 52.5
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 6.7e-30 135.6 121 61.2
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 4.4e-29 132.9 242 33.5
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 2.8e-28 130.2 120 52.5
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 8.2e-28 128.6 231 34.2
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 7.0e-27 125.6 304 30.6
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 3.8e-25 119.8 74 78.4
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 8.5e-25 118.6 74 78.4
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 8.5e-25 118.6 74 78.4
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 2.3e-22 110.5 104 49.0
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 1.3e-20 104.8 96 60.4
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 4.1e-19 99.8 82 58.5
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 3.8e-17 93.2 84 60.7
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.1e-16 91.7 77 57.1
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.0e-14 83.6 166 33.7
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 6.8e-14 82.4 61 65.6
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.3e-12 78.2 66 59.1
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 8.6e-09 65.5 61 55.7
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 1.4e-06 58.2 52 55.8
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 4.0e-06 56.6 54 57.4


User provided reference genes

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