Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 3.2e-176 621.7 323 100.0
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.2e-167 593.2 312 98.4
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 2.3e-166 589.0 313 98.1
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 2.3e-166 589.0 313 98.1
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 4.3e-165 584.7 314 97.8
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 1.1e-163 580.1 336 91.4
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 3.4e-162 575.1 312 94.6
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 8.4e-161 570.5 312 94.6
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.4e-160 568.9 312 93.9
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 1.6e-159 566.2 312 92.3
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 3.5e-159 565.1 312 92.9
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 4.9e-153 544.7 312 89.1
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.4e-152 543.1 312 89.4
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 1.4e-152 543.1 312 89.4
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 2.4e-152 542.3 312 88.5
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 7.1e-152 540.8 312 88.8
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 7.1e-152 540.8 312 88.8
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 7.1e-152 540.8 312 87.8
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.6e-151 539.7 312 87.8
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 3.5e-151 538.5 312 88.5
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 3.5e-151 538.5 312 88.5
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 1.8e-150 536.2 312 88.1
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 1.5e-146 523.1 340 81.2
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 1.5e-146 523.1 313 83.7
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 2.6e-146 522.3 311 84.2
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 2.6e-146 522.3 312 84.9
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 4.5e-146 521.5 312 84.3
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 1.7e-145 519.6 312 84.0
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 1.7e-145 519.6 312 84.0
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 3.8e-145 518.5 312 83.7
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 3.8e-145 518.5 312 83.7
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 4.9e-145 518.1 312 84.0
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 8.4e-145 517.3 312 83.3
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.1e-144 516.9 312 82.7
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 1.1e-144 516.9 312 83.3
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 2.4e-144 515.8 312 82.7
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 3.2e-144 515.4 312 82.4
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 4.2e-144 515.0 312 83.0
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 5.5e-144 514.6 312 82.1
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 1.6e-143 513.1 312 82.7
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 3.5e-143 511.9 312 81.4
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 4.6e-143 511.5 312 82.1
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 4.6e-143 511.5 312 80.4
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 7.9e-143 510.8 312 82.1
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 5.1e-142 508.1 312 81.4
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 6.7e-142 507.7 312 82.1
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 8.7e-142 507.3 312 81.4
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 1.9e-141 506.1 312 82.4
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 4.3e-141 505.0 312 81.4
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 5.6e-141 504.6 312 80.1
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 7.4e-141 504.2 310 81.6
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 7.4e-141 504.2 312 81.1
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 7.4e-141 504.2 312 79.8
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 1.3e-140 503.4 312 81.1
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 1.6e-140 503.1 312 80.8
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 1.6e-140 503.1 312 80.4
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 2.1e-140 502.7 349 74.8
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 2.8e-140 502.3 312 80.8
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 4.8e-140 501.5 320 78.4
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 6.2e-140 501.1 312 79.8
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 6.2e-140 501.1 312 81.4
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 8.2e-140 500.7 312 79.5
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 8.2e-140 500.7 312 80.4
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 8.2e-140 500.7 312 80.4
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 1.1e-139 500.4 312 79.8
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.1e-139 500.4 312 79.5
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 1.4e-139 500.0 312 79.2
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 1.4e-139 500.0 312 79.2
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 1.8e-139 499.6 312 81.4
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 2.4e-139 499.2 312 79.2
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 4.0e-139 498.4 312 79.8
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 6.9e-139 497.7 312 79.2
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 9.0e-139 497.3 312 81.1
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 1.2e-138 496.9 312 80.1
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.2e-138 496.9 312 80.4
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.5e-138 496.5 312 78.8
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 1.5e-138 496.5 312 80.1
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 2.6e-138 495.7 312 79.2
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 2.6e-138 495.7 312 80.1
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 3.4e-138 495.4 312 79.8
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 1.0e-137 493.8 312 78.2
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.0e-137 493.8 312 78.8
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.0e-137 493.8 314 79.3
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 2.9e-137 492.3 312 80.8
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 6.5e-137 491.1 349 73.6
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 7.1e-136 487.6 312 78.8
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 7.1e-136 487.6 323 76.2
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 2.1e-135 486.1 308 79.2
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 7.9e-135 484.2 312 78.8
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 7.9e-135 484.2 362 71.5
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.8e-134 483.0 312 78.8
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 3.0e-134 482.3 312 78.2
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 5.1e-134 481.5 336 74.1
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 2.4e-131 472.6 388 65.7
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 3.2e-128 462.2 292 80.5
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 5.7e-125 451.4 312 73.4
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 1.0e-121 440.7 365 65.5
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 1.2e-119 433.7 312 68.9
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 2.3e-118 429.5 344 66.6
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.2e-116 422.9 312 70.8
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 5.0e-113 411.8 312 68.9
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 9.4e-112 407.5 313 67.1
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 2.6e-109 399.4 240 83.8
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 4.7e-103 378.6 240 78.8
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 7.0e-99 364.8 310 58.4
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 3.5e-98 362.5 226 80.5
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 9.8e-93 344.4 209 81.3
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 5.6e-80 302.0 183 83.6
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.6e-79 300.4 182 79.7
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.4e-78 297.4 173 85.0
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 1.4e-78 297.4 238 68.1
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 6.2e-71 271.9 210 59.5
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 1.5e-69 267.3 167 81.4
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.9e-64 250.4 152 82.9
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 3.7e-60 236.1 250 54.8
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 8.7e-49 198.4 167 65.9
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 3.6e-47 193.0 349 34.4
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.1e-46 191.4 170 56.5
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 3.2e-43 179.9 107 80.4
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 3.0e-41 173.3 111 81.1
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 5.1e-41 172.6 105 81.0
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 8.7e-41 171.8 140 68.6
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 5.1e-33 146.0 80 96.2
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.1e-32 144.8 88 78.4
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.5e-29 134.4 76 85.5
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.6e-29 133.7 155 54.8
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.4e-27 127.9 134 50.0
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 2.4e-27 127.1 72 87.5
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 3.2e-27 126.7 72 88.9
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 7.9e-26 122.1 72 81.9
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.3e-25 121.3 74 79.7
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 1.5e-24 117.9 79 74.7
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 1.3e-23 114.8 190 34.7
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 1.5e-21 107.8 319 30.4
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.2e-20 104.0 58 81.0
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 7.1e-19 99.0 57 80.7
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 6.7e-17 92.4 52 94.2
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.0e-12 78.6 54 77.8
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 1.3e-12 78.2 47 85.1
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 1.0e-09 68.6 74 50.0
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 3.0e-09 67.0 31 90.3
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 2.5e-08 63.9 39 71.8


User provided reference genes

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