Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 2.8e-76 288.5 140 100.0
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 3.3e-69 265.0 151 86.1
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 2.8e-68 261.9 151 85.4
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 3.6e-68 261.5 151 85.4
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 4.7e-68 261.2 153 83.7
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 4.7e-68 261.2 151 84.8
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 2.3e-67 258.8 153 83.0
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 3.1e-67 258.5 153 82.4
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 3.1e-67 258.5 153 82.4
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 6.8e-67 257.3 169 76.9
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 6.8e-67 257.3 153 82.4
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 8.9e-67 256.9 152 82.2
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 3.4e-66 255.0 150 83.3
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 3.4e-66 255.0 150 83.3
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 4.4e-66 254.6 151 81.5
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 1.3e-65 253.1 153 81.0
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.1e-56 223.4 153 71.9
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 2.4e-56 222.2 153 68.0
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 4.1e-56 221.5 150 68.7
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 4.1e-56 221.5 150 68.7
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 4.1e-56 221.5 148 73.0
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.2e-55 219.9 150 68.0
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 6.0e-55 217.6 153 66.7
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 1.3e-54 216.5 153 66.0
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 1.7e-54 216.1 153 66.7
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 2.3e-54 215.7 153 66.0
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 2.3e-54 215.7 153 65.4
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 2.3e-54 215.7 153 65.4
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 3.0e-54 215.3 153 66.0
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 3.0e-54 215.3 153 66.7
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.9e-54 214.9 153 66.0
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 6.6e-54 214.2 153 66.7
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 6.6e-54 214.2 151 66.2
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 8.6e-54 213.8 151 65.6
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 1.1e-53 213.4 153 66.0
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 1.1e-53 213.4 151 65.6
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 1.5e-53 213.0 153 67.3
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.5e-53 213.0 148 66.9
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 1.5e-53 213.0 153 67.3
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 1.5e-53 213.0 152 65.8
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 1.5e-53 213.0 153 66.0
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 1.5e-53 213.0 153 65.4
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.9e-53 212.6 153 68.0
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 1.9e-53 212.6 153 65.4
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 2.5e-53 212.2 150 66.0
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 2.5e-53 212.2 150 66.7
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 3.3e-53 211.8 153 65.4
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 3.3e-53 211.8 153 64.7
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 4.3e-53 211.5 153 64.7
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 5.6e-53 211.1 150 67.3
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 5.6e-53 211.1 150 66.7
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 5.6e-53 211.1 153 66.7
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.5e-53 210.3 153 64.1
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 9.5e-53 210.3 150 66.0
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 9.5e-53 210.3 150 66.0
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 9.5e-53 210.3 153 64.7
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 1.2e-52 209.9 145 67.6
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 1.2e-52 209.9 150 66.0
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 1.2e-52 209.9 153 63.4
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 1.6e-52 209.5 153 65.4
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 1.6e-52 209.5 153 64.1
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 2.1e-52 209.1 150 66.7
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 2.1e-52 209.1 153 65.4
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 2.8e-52 208.8 150 64.7
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.6e-52 208.4 153 64.7
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 3.6e-52 208.4 150 64.7
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 3.6e-52 208.4 152 67.1
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 4.7e-52 208.0 153 64.7
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 4.7e-52 208.0 153 63.4
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 6.2e-52 207.6 151 64.2
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 6.2e-52 207.6 153 62.7
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 8.1e-52 207.2 145 67.6
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 1.1e-51 206.8 153 64.7
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 1.4e-51 206.5 147 66.0
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.4e-51 206.5 151 64.2
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.4e-51 206.5 150 64.7
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 1.8e-51 206.1 153 64.7
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.8e-51 206.1 153 62.1
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 1.8e-51 206.1 150 62.7
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.3e-51 205.7 153 64.7
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 2.3e-51 205.7 150 63.3
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 4.0e-51 204.9 153 62.7
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 5.2e-51 204.5 153 64.1
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 1.2e-50 203.4 128 80.5
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.2e-50 203.4 151 64.2
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.5e-50 203.0 153 63.4
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 2.0e-50 202.6 153 60.1
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 2.0e-50 202.6 153 62.1
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 2.0e-50 202.6 145 64.1
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 2.0e-50 202.6 145 66.2
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 2.6e-50 202.2 150 60.7
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 2.6e-50 202.2 150 62.7
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 3.4e-50 201.8 153 63.4
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 4.4e-50 201.4 150 63.3
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 4.4e-50 201.4 153 61.4
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.8e-50 201.1 153 62.1
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 5.8e-50 201.1 150 62.7
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 5.8e-50 201.1 153 61.4
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 5.8e-50 201.1 150 62.7
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 7.6e-50 200.7 153 62.7
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.9e-50 200.3 153 64.1
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 9.9e-50 200.3 153 65.4
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 1.7e-49 199.5 155 61.9
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.9e-49 198.7 155 61.3
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 2.9e-49 198.7 153 61.4
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 4.9e-49 198.0 150 61.3
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 4.9e-49 198.0 137 67.2
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 6.4e-49 197.6 154 60.4
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 8.4e-49 197.2 153 58.8
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 1.1e-48 196.8 152 61.2
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.1e-48 196.8 152 61.2
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.1e-48 196.8 145 64.1
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 1.9e-48 196.1 150 63.3
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 2.4e-48 195.7 150 60.7
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 3.2e-48 195.3 150 60.7
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 7.1e-48 194.1 150 62.7
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 1.6e-47 193.0 150 62.0
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.5e-47 191.8 152 60.5
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 6.0e-47 191.0 150 60.0
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 1.0e-46 190.3 151 60.9
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 2.3e-46 189.1 148 63.5
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.2e-44 183.3 148 56.8
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 4.7e-44 181.4 145 56.6
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 4.0e-43 178.3 155 57.4
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 6.9e-43 177.6 145 54.5
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 8.9e-43 177.2 155 56.8
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.1e-40 170.2 142 57.0
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.6e-38 161.0 152 52.0
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 2.5e-37 159.1 122 64.8
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 2.5e-37 159.1 120 62.5
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.1e-36 156.0 124 60.5
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 1.8e-35 152.9 178 48.3
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 5.8e-34 147.9 111 63.1
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 1.7e-33 146.4 111 63.1
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 3.8e-33 145.2 145 46.2
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 2.7e-31 139.0 151 46.4
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 9.6e-29 130.6 78 76.9
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 1.3e-28 130.2 75 77.3
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 3.1e-27 125.6 108 54.6
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 1.3e-25 120.2 75 69.3
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 1.1e-24 117.1 150 40.0
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.4e-24 115.9 94 60.6
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.6e-23 113.2 58 84.5
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.6e-23 113.2 58 84.5
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 1.1e-19 100.5 70 62.9
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.6e-18 95.9 99 49.5
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 2.9e-17 92.4 70 58.6
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 3.8e-17 92.0 132 33.3
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 8.4e-17 90.9 77 53.2
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 4.2e-16 88.6 64 59.4
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 9.3e-16 87.4 70 60.0


User provided reference genes

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