Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25296 Brassica carinata HOM05D004379 ORTHO05D005186 9.0e-42 172.9 75 100.0
BolC2t09767H Brassica oleracea HOM05D004379 ORTHO05D005186 3.6e-38 161.0 73 91.8
A02p23810 Brassica napus HOM05D004379 ORTHO05D005186 5.7e-36 153.7 73 87.7
BraA02t07372Z Brassica rapa HOM05D004379 ORTHO05D005186 5.7e-36 153.7 73 87.7
C02p37550 Brassica napus HOM05D004379 ORTHO05D005186 2.2e-35 151.8 73 89.0
Thhalv10019808m.g Eutrema salsugineum HOM05D004379 ORTHO05D005186 5.5e-31 137.1 76 77.6
CARHR074360 Cardamine hirsuta HOM05D004379 ORTHO05D005186 2.6e-28 128.3 71 71.8
AL2G41390 Arabidopsis lyrata HOM05D004379 ORTHO05D005186 2.8e-27 124.8 68 69.1
AT1G80133 Arabidopsis thaliana HOM05D004379 ORTHO05D005186 4.8e-27 124.0 68 69.1
Carub.0002s2738 Capsella rubella HOM05D004379 ORTHO05D005186 2.2e-24 115.2 68 64.7
FvH4_6g29870 Fragaria vesca HOM05D004379 ORTHO05D005186 4.8e-11 70.9 79 39.2
FAN14G0452 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.4e-10 69.3 79 38.0
Glyma.15G008000 Glycine max HOM05D004379 ORTHO05D005186 1.4e-10 69.3 79 38.0
RcHm_v2.0_Chr2g0088241 Rosa chinensis HOM05D004379 ORTHO05D005186 1.4e-10 69.3 79 41.8
Prupe.3G085300 Prunus persica HOM05D004379 ORTHO05D005186 1.8e-10 68.9 72 40.3
FAN02G0226 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.4e-10 68.6 80 37.5
FAN17G1709 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.4e-10 68.6 80 37.5
Aqoxy7G03687 Aquilegia oxysepala HOM05D004379 ORTHO05D005186 3.1e-10 68.2 67 41.8
FAN05G0070 Fragaria x ananassa HOM05D004379 ORTHO05D005186 4.1e-10 67.8 80 37.5
RcHm_v2.0_Chr2g0135761 Rosa chinensis HOM05D004379 ORTHO05D005186 4.1e-10 67.8 70 41.4
ClCG06G011240 Citrullus lanatus HOM05D004379 ORTHO05D005186 9.1e-10 66.6 75 41.3
Nn2g12051 Nelumbo nucifera HOM05D004379 ORTHO05D005186 9.1e-10 66.6 75 36.0
Thecc.06G022000 Theobroma cacao HOM05D004379 ORTHO05D005186 9.1e-10 66.6 77 35.1
Duzib192G0219 Durio zibethinus HOM05D004379 ORTHO05D005186 1.2e-09 66.2 72 40.3
AUR62016345 Chenopodium quinoa HOM05D004379 ORTHO05D005186 1.6e-09 65.9 76 35.5
Medtr4g010300 Medicago truncatula HOM05D004379 ORTHO05D005186 1.6e-09 65.9 69 39.1
Rhsim12G0191800 Rhododendron simsii HOM05D004379 ORTHO05D005186 1.6e-09 65.9 88 34.1
Sed0018633 Sechium edule HOM05D004379 ORTHO05D005186 1.6e-09 65.9 66 43.9
FAN28G1543 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.0e-09 65.5 76 39.5
Gohir.D10G075800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 2.0e-09 65.5 79 36.7
Gorai.011G083500 Gossypium raimondii HOM05D004379 ORTHO05D005186 2.0e-09 65.5 79 36.7
Sed0013123 Sechium edule HOM05D004379 ORTHO05D005186 2.0e-09 65.5 79 39.2
FAN09G2661 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.7e-09 65.1 80 36.2
MBI04_g29349_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 2.7e-09 65.1 69 39.1
CSS0000383 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 3.5e-09 64.7 74 32.4
CsaV3_1G030270 Cucumis sativus L. HOM05D004379 ORTHO05D005186 3.5e-09 64.7 77 40.3
FvH4_1g03100 Fragaria vesca HOM05D004379 ORTHO05D005186 3.5e-09 64.7 76 38.2
FAN23G1202 Fragaria x ananassa HOM05D004379 ORTHO05D005186 3.5e-09 64.7 76 38.2
FAN23G2903 Fragaria x ananassa HOM05D004379 ORTHO05D005186 3.5e-09 64.7 76 38.2
FAN26G3437 Fragaria x ananassa HOM05D004379 ORTHO05D005186 3.5e-09 64.7 76 38.2
Glyma.02G235000 Glycine max HOM05D002122 ORTHO05D002205 3.5e-09 64.7 54 46.3
Manes.11G055900 Manihot esculenta HOM05D004379 ORTHO05D005186 3.5e-09 64.7 83 33.7
VMungo0331G0688 Vigna mungo HOM05D004379 ORTHO05D005186 4.5e-09 64.3 74 37.8
Gohir.A10G074000 Gossypium hirsutum HOM05D004379 ORTHO05D005186 5.9e-09 63.9 80 35.0
Medtr4g114660 Medicago truncatula HOM05D004379 ORTHO05D005186 5.9e-09 63.9 69 40.6
Nn8g39475 Nelumbo nucifera HOM05D004379 ORTHO05D005186 5.9e-09 63.9 76 35.5
Duzib235G0719 Durio zibethinus HOM05D004379 ORTHO05D005186 7.7e-09 63.5 78 33.3
MD17G1210000 Malus domestica HOM05D004379 ORTHO05D005186 7.7e-09 63.5 70 37.1
Prupe.7G036700 Prunus persica HOM05D004379 ORTHO05D005186 7.7e-09 63.5 80 37.5
Ciclev10027032m.g Citrus clementina HOM05D004379 ORTHO05D005186 1.0e-08 63.2 78 38.5
Hma1.2p1_0042F.1_g025560 Hydrangea macrophylla HOM05D004379 ORTHO05D005186 1.0e-08 63.2 70 37.1
Psat5g302160 Pisum sativum HOM05D004379 ORTHO05D005186 1.0e-08 63.2 73 35.6
QL05p029537 Quercus lobata HOM05D004379 ORTHO05D005186 1.0e-08 63.2 75 36.0
Sabra18G0111000 Salix brachista HOM05D001818 ORTHO05D001780 1.0e-08 63.2 70 37.1
TAR383G0091 Trochodendron aralioides HOM05D004379 ORTHO05D005186 1.0e-08 63.2 73 37.0
arahy.Tifrunner.gnm1.ann1.WW0PRH Arachis hypogaea HOM05D004379 ORTHO05D005186 1.3e-08 62.8 67 41.8
CiPaw.02G156500 Carya illinoinensis HOM05D004379 ORTHO05D005186 1.3e-08 62.8 73 41.1
MD15G1171700 Malus domestica HOM05D004379 ORTHO05D005186 1.3e-08 62.8 73 38.4
Phvul.005G177700 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 1.3e-08 62.8 69 40.6
Cpa.g.sc10.259 Carica papaya HOM05D004379 ORTHO05D005186 1.7e-08 62.4 70 40.0
Glyma.07G030700 Glycine max HOM05D004379 ORTHO05D005186 1.7e-08 62.4 71 38.0
Psat7g256400 Pisum sativum HOM05D004379 ORTHO05D005186 1.7e-08 62.4 75 36.0
Glyma.17G113800 Glycine max HOM05D004379 ORTHO05D005186 2.2e-08 62.0 68 44.1
Gohir.A05G015700 Gossypium hirsutum HOM05D004379 ORTHO05D005186 2.2e-08 62.0 76 38.2
Gohir.D05G016800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 2.2e-08 62.0 76 38.2
Gorai.009G017000 Gossypium raimondii HOM05D004379 ORTHO05D005186 2.2e-08 62.0 76 38.2
Lalb_Chr22g0350861 Lupinus albus HOM05D004379 ORTHO05D005186 2.2e-08 62.0 64 45.3
Phvul.010G155400 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 2.2e-08 62.0 72 37.5
Cfa003389 Carpinus fangiana HOM05D004379 ORTHO05D005186 2.9e-08 61.6 69 39.1
CiPaw.04G172300 Carya illinoinensis HOM05D004379 ORTHO05D005186 2.9e-08 61.6 67 40.3
Lalb_Chr07g0179021 Lupinus albus HOM05D004379 ORTHO05D005186 2.9e-08 61.6 69 40.6
MBI04_g47848_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 2.9e-08 61.6 69 37.7
Manes.14G121900 Manihot esculenta HOM05D004379 ORTHO05D005186 2.9e-08 61.6 66 40.9
Potri.018G130700 Populus trichocarpa HOM05D004379 ORTHO05D005186 2.9e-08 61.6 70 37.1
Prupe.7G244400 Prunus persica HOM05D004379 ORTHO05D005186 2.9e-08 61.6 77 36.4
MBI01_g38638_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 3.8e-08 61.2 70 37.1
PGR102G3274 Punica granatum HOM05D004379 ORTHO05D005186 3.8e-08 61.2 76 35.5
Sabra06G0050900 Salix brachista HOM05D004379 ORTHO05D005186 3.8e-08 61.2 68 36.8
VMungo1215G1478 Vigna mungo HOM05D004379 ORTHO05D005186 3.8e-08 61.2 69 43.5
arahy.Tifrunner.gnm1.ann1.131LTR Arachis hypogaea HOM05D004379 ORTHO05D005186 5.0e-08 60.8 74 36.5
CiPaw.03G245200 Carya illinoinensis HOM05D004379 ORTHO05D005186 5.0e-08 60.8 70 35.7
Glyma.08G212100 Glycine max HOM05D004379 ORTHO05D005186 5.0e-08 60.8 82 35.4
QL02p088712 Quercus lobata HOM05D004379 ORTHO05D005186 6.5e-08 60.5 67 38.8
TPR.G26481 Trifolium pratense HOM05D004379 ORTHO05D005186 6.5e-08 60.5 69 36.2
unitig_61.g26235 Utricularia gibba HOM05D004379 ORTHO05D005186 6.5e-08 60.5 67 40.3
arahy.Tifrunner.gnm1.ann1.YHK00Y Arachis hypogaea HOM05D004379 ORTHO05D005186 8.5e-08 60.1 76 35.5
Cc04_g04300 Coffea canephora HOM05D004379 ORTHO05D005186 8.5e-08 60.1 79 32.9
CsaV3_4G001570 Cucumis sativus L. HOM05D004379 ORTHO05D005186 8.5e-08 60.1 76 31.6
CsaV3_7G032450 Cucumis sativus L. HOM05D004379 ORTHO05D005186 8.5e-08 60.1 77 35.1
ECA232G5025 Erigeron canadensis HOM05D000315 ORTHO05D001379 8.5e-08 60.1 72 36.1
TPR.G38692 Trifolium pratense HOM05D004379 ORTHO05D005186 8.5e-08 60.1 77 40.3
Atru.chr1.2986 Acer truncatum HOM05D004379 ORTHO05D005186 1.1e-07 59.7 77 36.4
MD02G1030200 Malus domestica HOM05D004379 ORTHO05D005186 1.1e-07 59.7 75 37.3
Thecc.09G128000 Theobroma cacao HOM05D004379 ORTHO05D005186 1.1e-07 59.7 75 34.7
Atru.chr7.1137 Acer truncatum HOM05D004379 ORTHO05D005186 1.5e-07 59.3 72 36.1
CSS0024700 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 1.5e-07 59.3 83 27.7
COL.COLO4_12954 Corchorus olitorius HOM05D004379 ORTHO05D005186 1.5e-07 59.3 83 32.5
Haze_25560 Corylus avellana HOM05D004379 ORTHO05D005186 1.5e-07 59.3 68 35.3
Migut.I00774 Erythranthe guttata HOM05D004379 ORTHO05D005186 1.5e-07 59.3 78 34.6
Medtr2g103780 Medicago truncatula HOM05D004379 ORTHO05D005186 1.5e-07 59.3 79 31.6
Sed0025536 Sechium edule HOM05D004379 ORTHO05D005186 1.5e-07 59.3 66 40.9
ClCG07G012630 Citrullus lanatus HOM05D004379 ORTHO05D005186 1.9e-07 58.9 81 35.8
MELO3C029250.2 Cucumis melo HOM05D004379 ORTHO05D005186 1.9e-07 58.9 70 34.3
Lj3g0013777 Lotus japonicus HOM05D004379 ORTHO05D005186 1.9e-07 58.9 75 37.3
arahy.Tifrunner.gnm1.ann1.4DH38B Arachis hypogaea HOM05D004379 ORTHO05D005186 2.5e-07 58.5 64 39.1
arahy.Tifrunner.gnm1.ann1.4K2N5B Arachis hypogaea HOM05D004379 ORTHO05D005186 2.5e-07 58.5 64 39.1
TWI12G0794 Tripterygium wilfordii HOM05D004379 ORTHO05D005186 2.5e-07 58.5 82 30.5
Cfa020793 Carpinus fangiana HOM05D002122 ORTHO05D002205 3.2e-07 58.2 55 40.0
HanXRQChr12g0361431 Helianthus annuus HOM05D004379 ORTHO05D005186 3.2e-07 58.2 71 35.2
Lalb_Chr13g0301791 Lupinus albus HOM05D004379 ORTHO05D005186 3.2e-07 58.2 67 37.3
PSO135G0759 Papaver somniferum HOM05D004379 ORTHO05D005186 3.2e-07 58.2 81 35.8
SalBow2G2996 Salvia bowleyana HOM05D004379 ORTHO05D005186 3.2e-07 58.2 79 34.2
Sed0015199 Sechium edule HOM05D004379 ORTHO05D005186 3.2e-07 58.2 69 34.8
SEGI_35416 Sequoiadendron giganteum HOM05D004379 ORTHO05D005186 3.2e-07 58.2 59 39.0
MSTRG.11136 Avicennia marina HOM05D004379 ORTHO05D005186 4.2e-07 57.8 79 36.7
CANSAT56G1089 Cannabis sativa HOM05D004379 ORTHO05D005186 4.2e-07 57.8 69 37.7
ClCG09G002880 Citrullus lanatus HOM05D004379 ORTHO05D005186 4.2e-07 57.8 78 34.6
HanXRQChr06g0169201 Helianthus annuus HOM05D004379 ORTHO05D005186 4.2e-07 57.8 66 31.8
Lalb_Chr12g0197991 Lupinus albus HOM05D004379 ORTHO05D005186 7.2e-07 57.0 69 39.1
Nitab4.5_0007793g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 7.2e-07 57.0 67 35.8
Peaxi162Scf00785g00321 Petunia axillaris HOM05D004379 ORTHO05D005186 7.2e-07 57.0 67 40.3
EL10Ac9g21909 Beta vulgaris HOM05D004379 ORTHO05D005186 9.4e-07 56.6 75 32.0
MELO3C017882.2 Cucumis melo HOM05D004379 ORTHO05D005186 9.4e-07 56.6 81 32.1
Eucgr.C01743 Eucalyptus grandis HOM05D004379 ORTHO05D005186 9.4e-07 56.6 81 30.9
Ciclev10010639m.g Citrus clementina HOM05D004379 ORTHO05D005186 1.2e-06 56.2 72 34.7
Dinv42236 Davidia involucrata HOM05D002122 ORTHO05D002205 1.2e-06 56.2 60 36.7
Glyma.01G242700 Glycine max HOM05D002122 ORTHO05D002205 1.2e-06 56.2 54 38.9
Lalb_Chr04g0263751 Lupinus albus HOM05D002122 ORTHO05D002205 1.6e-06 55.8 60 36.7
Rhsim08G0213700 Rhododendron simsii HOM05D004379 ORTHO05D005186 1.6e-06 55.8 70 34.3
TPR.G37291 Trifolium pratense HOM05D004379 ORTHO05D005186 1.6e-06 55.8 74 33.8
VMungo1215G2893 Vigna mungo HOM05D002122 ORTHO05D002205 1.6e-06 55.8 54 40.7
Actinidia08802 Actinidia chinensis HOM05D004379 ORTHO05D005186 2.1e-06 55.5 62 37.1
Duzib168G0259 Durio zibethinus HOM05D004379 ORTHO05D005186 2.1e-06 55.5 64 34.4
Lalb_Chr04g0262391 Lupinus albus HOM05D004379 ORTHO05D005186 2.1e-06 55.5 74 31.1
unitig_0.g1118 Utricularia gibba HOM05D004379 ORTHO05D005186 2.1e-06 55.5 67 35.8
Actinidia15991 Actinidia chinensis HOM05D004379 ORTHO05D005186 2.7e-06 55.1 63 36.5
Duzib187G0465 Durio zibethinus HOM05D004379 ORTHO05D005186 2.7e-06 55.1 64 34.4
Phvul.002G051900 Phaseolus vulgaris HOM05D002122 ORTHO05D002205 2.7e-06 55.1 54 38.9
Phvul.003G165600 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 2.7e-06 55.1 62 43.5
Hund06564 Selenicereus undatus HOM05D004379 ORTHO05D005186 2.7e-06 55.1 79 29.1
SalBow6G6427 Salvia bowleyana HOM05D004379 ORTHO05D005186 3.6e-06 54.7 60 36.7
Sed0016032 Sechium edule HOM05D004379 ORTHO05D005186 3.6e-06 54.7 69 36.2
Sed0020577 Sechium edule HOM05D004379 ORTHO05D005186 3.6e-06 54.7 66 36.4
Eucgr.F03867 Eucalyptus grandis HOM05D004379 ORTHO05D005186 4.7e-06 54.3 83 33.7
Eucgr.L02713 Eucalyptus grandis HOM05D004379 ORTHO05D005186 4.7e-06 54.3 83 33.7
Lsat_1_v5_gn_5_132021 Lactuca sativa HOM05D004379 ORTHO05D005186 4.7e-06 54.3 76 28.9
TWI75G1822 Tripterygium wilfordii HOM05D004379 ORTHO05D005186 4.7e-06 54.3 51 49.0
CiPaw.05G017400 Carya illinoinensis HOM05D002122 ORTHO05D002205 6.1e-06 53.9 53 39.6
Thecc.09G025200 Theobroma cacao HOM05D004379 ORTHO05D005186 8.0e-06 53.5 65 33.8


User provided reference genes

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