Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25260 Brassica carinata HOM05D000566 ORTHO05D000686 4.5e-19 97.1 54 100.0
BraA02t08251Z Brassica rapa HOM05D000566 ORTHO05D000686 4.7e-08 60.5 48 75.0
Lj4g0012403 Lotus japonicus HOM05D000566 ORTHO05D000686 1.8e-07 58.5 45 77.8
A03p51420 Brassica napus HOM05D000566 ORTHO05D000686 2.3e-07 58.2 46 76.1
C07p49840 Brassica napus HOM05D000566 ORTHO05D000686 2.3e-07 58.2 46 76.1
BolC7t45486H Brassica oleracea HOM05D000566 ORTHO05D000686 2.3e-07 58.2 46 76.1
BraA03t14226Z Brassica rapa HOM05D000566 ORTHO05D000686 2.3e-07 58.2 46 76.1
HanXRQChr15g0490581 Helianthus annuus HOM05D000566 ORTHO05D000686 3.1e-07 57.8 44 77.3
Atru.chr10.1701 Acer truncatum HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
Actinidia16809 Actinidia chinensis HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
Ah.09g233700 Amaranthus hybridus HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
arahy.Tifrunner.gnm1.ann1.274M2K Arachis hypogaea HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
arahy.Tifrunner.gnm1.ann1.MK6WNS Arachis hypogaea HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
arahy.Tifrunner.gnm1.ann1.XU6ZBK Arachis hypogaea HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
Ca_26052_v3 Cicer arietinum L. HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
Ciclev10014629m.g Citrus clementina HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
Cc02_g14630 Coffea canephora HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
DCAR_028012 Daucus carota HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
Dinv04628 Davidia involucrata HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
Glyma.07G205100 Glycine max HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
Glyma.13G171100 Glycine max HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
MD05G1303500 Malus domestica HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
MD10G1282700 Malus domestica HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
Manes.16G037100 Manihot esculenta HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
Manes.17G054000 Manihot esculenta HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
Medtr4g087780 Medicago truncatula HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
Phvul.003G058200 Phaseolus vulgaris HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
Prupe.4G059200 Prunus persica HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
PGR042G0221 Punica granatum HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
QL05p046274 Quercus lobata HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
Hund23959 Selenicereus undatus HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
TPR.G16257 Trifolium pratense HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
TWI38G1373 Tripterygium wilfordii HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
TWI38G2249 Tripterygium wilfordii HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
vmacro03937 Vaccinium macrocarpon HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
VMungo0251G3123 Vigna mungo HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
VMungo0540G1475 Vigna mungo HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
GSVIVG01021189001 Vitis vinifera HOM05D000566 ORTHO05D000686 4.0e-07 57.4 45 75.6
AL7G35710 Arabidopsis lyrata HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
AT4G18570 Arabidopsis thaliana HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
MSTRG.14725 Avicennia marina HOM05D000566 ORTHO05D000686 5.2e-07 57.0 45 73.3
BcaB04g18482 Brassica carinata HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
BcaC01g00548 Brassica carinata HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
BcaC09g51488 Brassica carinata HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
BcaNung03816 Brassica carinata HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
A01p10580 Brassica napus HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
A08p13870 Brassica napus HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
C01p12520 Brassica napus HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
C03p81330 Brassica napus HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
BolC1t01226H Brassica oleracea HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
BolC3t20398H Brassica oleracea HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
BraA01t01004Z Brassica rapa HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
BraA08t33372Z Brassica rapa HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
Carub.0007s2267 Capsella rubella HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
CAN.G702.19 Capsicum annuum HOM05D000566 ORTHO05D000686 5.2e-07 57.0 45 73.3
CARHR225410 Cardamine hirsuta HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
Cpa.g.sc7.63 Carica papaya HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
Eucgr.E02711 Eucalyptus grandis HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
Thhalv10024648m.g Eutrema salsugineum HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
FvH4_3g08000 Fragaria vesca HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
FAN11G2369 Fragaria x ananassa HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
FAN25G1525 Fragaria x ananassa HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
Lj1A1194T86 Lonicera japonica HOM05D000566 ORTHO05D000686 5.2e-07 57.0 45 75.6
Nitab4.5_0000681g0010 Nicotiana tabacum HOM05D000566 ORTHO05D000686 5.2e-07 57.0 45 73.3
Peaxi162Scf00223g00811 Petunia axillaris HOM05D000566 ORTHO05D000686 5.2e-07 57.0 45 73.3
RcHm_v2.0_Chr5g0010311 Rosa chinensis HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
Sp7g15470 Schrenkiella parvula HOM05D000566 ORTHO05D000686 5.2e-07 57.0 46 73.9
Solyc02g077090.4 Solanum lycopersicum HOM05D000566 ORTHO05D000686 5.2e-07 57.0 45 73.3
Sopen02g022020 Solanum pennellii HOM05D000566 ORTHO05D000686 5.2e-07 57.0 45 73.3
PGSC0003DMG400010246 Solanum tuberosum HOM05D000566 ORTHO05D000686 5.2e-07 57.0 45 73.3
Aa31LG6G1300 Aethionema arabicum HOM05D000566 ORTHO05D000686 6.8e-07 56.6 46 71.7
ECA234G0195 Erigeron canadensis HOM05D000566 ORTHO05D000686 6.8e-07 56.6 44 75.0
Oeu043097.1 Olea europaea HOM05D000566 ORTHO05D000686 6.8e-07 56.6 45 75.6
Sc05g0007200 Simmondsia chinensis HOM05D000566 ORTHO05D000686 6.8e-07 56.6 46 71.7
arahy.Tifrunner.gnm1.ann1.BA5IRE Arachis hypogaea HOM05D000566 ORTHO05D000686 8.9e-07 56.2 45 73.3
MSTRG.13214 Avicennia marina HOM05D000566 ORTHO05D000686 8.9e-07 56.2 45 73.3
CDE08G0428 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 8.9e-07 56.2 44 72.7
COL.COLO4_31322 Corchorus olitorius HOM05D000566 ORTHO05D000686 8.9e-07 56.2 45 73.3
DCAR_005237 Daucus carota HOM05D000566 ORTHO05D000686 8.9e-07 56.2 45 73.3
Gohir.A06G125600 Gossypium hirsutum HOM05D000566 ORTHO05D000686 8.9e-07 56.2 45 73.3
Gohir.D06G136000 Gossypium hirsutum HOM05D000566 ORTHO05D000686 8.9e-07 56.2 45 73.3
Gorai.010G158300 Gossypium raimondii HOM05D000566 ORTHO05D000686 8.9e-07 56.2 45 73.3
HanXRQChr07g0186921 Helianthus annuus HOM05D000566 ORTHO05D000686 8.9e-07 56.2 44 72.7
Hma1.2p1_0155F.1_g068260 Hydrangea macrophylla HOM05D000566 ORTHO05D000686 8.9e-07 56.2 45 73.3
Lalb_Chr16g0384241 Lupinus albus HOM05D000566 ORTHO05D000686 8.9e-07 56.2 45 73.3
SGA_v2.0_scaffold1G00029 Striga asiatica HOM05D000566 ORTHO05D000686 8.9e-07 56.2 45 75.6
Thecc.06G173300 Theobroma cacao HOM05D000566 ORTHO05D000686 8.9e-07 56.2 45 73.3
Aqoxy4G00467 Aquilegia oxysepala HOM05D000566 ORTHO05D000686 1.2e-06 55.8 46 71.7
ClCG01G023640 Citrullus lanatus HOM05D000566 ORTHO05D000686 1.2e-06 55.8 45 73.3
MELO3C007221.2 Cucumis melo HOM05D000566 ORTHO05D000686 1.2e-06 55.8 45 73.3
CsaV3_6G050790 Cucumis sativus L. HOM05D000566 ORTHO05D000686 1.2e-06 55.8 45 73.3
DCAR_004017 Daucus carota HOM05D000566 ORTHO05D008456 1.2e-06 55.8 45 73.3
Migut.H01453 Erythranthe guttata HOM05D000566 ORTHO05D000686 1.2e-06 55.8 46 71.7
Lj2C297T7 Lonicera japonica HOM05D000566 ORTHO05D000686 1.2e-06 55.8 45 73.3
MBI06_g18003_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D000686 1.2e-06 55.8 45 71.1
MBI06_g45389_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D000686 1.2e-06 55.8 45 71.1
Nitab4.5_0001608g0010 Nicotiana tabacum HOM05D000566 ORTHO05D000686 1.2e-06 55.8 45 71.1
Oeu012061.1 Olea europaea HOM05D000566 ORTHO05D000686 1.2e-06 55.8 45 73.3
Phvul.006G177200 Phaseolus vulgaris HOM05D000566 ORTHO05D000686 1.2e-06 55.8 45 73.3
Sabra11G0046300 Salix brachista HOM05D000566 ORTHO05D000686 1.2e-06 55.8 46 71.7
Sed0001579 Sechium edule HOM05D000566 ORTHO05D000686 1.2e-06 55.8 45 73.3
Sed0016456 Sechium edule HOM05D000566 ORTHO05D000686 1.2e-06 55.8 45 73.3
SGA_v2.0_scaffold109G31086 Striga asiatica HOM05D000566 ORTHO05D000686 1.2e-06 55.8 46 71.7
CSS0031409 Camellia sinensis var. sinensis HOM05D000566 ORTHO05D000686 1.5e-06 55.5 45 73.3
CDE02G4350 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 1.5e-06 55.5 44 72.7
Lsat_1_v5_gn_4_50000 Lactuca sativa HOM05D000566 ORTHO05D000686 1.5e-06 55.5 44 72.7
SalBow8G1882 Salvia bowleyana HOM05D000566 ORTHO05D000686 1.5e-06 55.5 45 73.3
EL10Ac8g20506 Beta vulgaris HOM05D000566 ORTHO05D000686 2.0e-06 55.1 45 73.3
CSS0042841 Camellia sinensis var. sinensis HOM05D000566 ORTHO05D000686 2.0e-06 55.1 45 73.3
Lalb_Chr20g0121251 Lupinus albus HOM05D000566 ORTHO05D000686 2.0e-06 55.1 45 71.1
MBI07_g21407_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D000686 2.0e-06 55.1 45 71.1
Nn1g09060 Nelumbo nucifera HOM05D000566 ORTHO05D000686 2.0e-06 55.1 45 71.1
TAR624G0549 Trochodendron aralioides HOM05D000566 ORTHO05D000686 2.0e-06 55.1 48 68.8
Duzib160G0685 Durio zibethinus HOM05D000566 ORTHO05D000686 2.6e-06 54.7 45 71.1
Gohir.A09G074100 Gossypium hirsutum HOM05D000566 ORTHO05D000686 2.6e-06 54.7 45 71.1
Gohir.D09G073800 Gossypium hirsutum HOM05D000566 ORTHO05D000686 2.6e-06 54.7 45 71.1
Gorai.006G088700 Gossypium raimondii HOM05D000566 ORTHO05D000686 2.6e-06 54.7 45 71.1
Lj6g0010625 Lotus japonicus HOM05D000566 ORTHO05D000686 2.6e-06 54.7 45 68.9
Potri.011G064500 Populus trichocarpa HOM05D000566 ORTHO05D000686 2.6e-06 54.7 46 69.6
Rhsim13G0191700 Rhododendron simsii HOM05D000566 ORTHO05D000686 2.6e-06 54.7 45 71.1
THA.LOC104806152 Tarenaya hassleriana HOM05D000566 ORTHO05D000686 2.6e-06 54.7 41 78.0
unitig_26.g9352 Utricularia gibba HOM05D000566 ORTHO05D000686 2.6e-06 54.7 46 71.7
unitig_61.g26086 Utricularia gibba HOM05D000566 ORTHO05D000686 2.6e-06 54.7 46 69.6
Glyma.13G231000 Glycine max HOM05D000566 ORTHO05D000686 3.4e-06 54.3 46 69.6
Gohir.A10G031200 Gossypium hirsutum HOM05D000566 ORTHO05D000686 3.4e-06 54.3 46 67.4
Gohir.D10G032000 Gossypium hirsutum HOM05D000566 ORTHO05D000686 3.4e-06 54.3 46 67.4
Gorai.011G033700 Gossypium raimondii HOM05D000566 ORTHO05D000686 3.4e-06 54.3 46 67.4
TAR626G1519 Trochodendron aralioides HOM05D000566 ORTHO05D000686 3.4e-06 54.3 44 70.5
unitig_749.g13662 Utricularia gibba HOM05D000566 ORTHO05D000686 3.4e-06 54.3 52 65.4
MSTRG.7395 Avicennia marina HOM05D000566 ORTHO05D000686 4.4e-06 53.9 45 73.3
CANSAT35G1676 Cannabis sativa HOM05D000566 ORTHO05D000686 4.4e-06 53.9 49 67.3
CiPaw.09G068200 Carya illinoinensis HOM05D000566 ORTHO05D000686 4.4e-06 53.9 45 73.3
Duzib235G1311 Durio zibethinus HOM05D000566 ORTHO05D000686 4.4e-06 53.9 45 71.1
unitig_0.g710 Utricularia gibba HOM05D000566 ORTHO05D000686 4.4e-06 53.9 45 68.9
Cfa000590 Carpinus fangiana HOM05D000566 ORTHO05D000686 5.8e-06 53.5 46 71.7
Haze_06260 Corylus avellana HOM05D000566 ORTHO05D000686 5.8e-06 53.5 46 71.7
Lalb_Chr05g0218761 Lupinus albus HOM05D000566 ORTHO05D000686 5.8e-06 53.5 45 68.9
AUR62036579 Chenopodium quinoa HOM05D000566 ORTHO05D000686 7.5e-06 53.1 45 71.1
Migut.M01051 Erythranthe guttata HOM05D000566 ORTHO05D000686 7.5e-06 53.1 46 69.6
Hund21185 Selenicereus undatus HOM05D000566 ORTHO05D000686 7.5e-06 53.1 47 66.0


User provided reference genes

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