Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 6.4e-31 136.7 67 100.0
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 4.2e-30 134.0 66 98.5
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 4.2e-30 134.0 66 98.5
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 4.2e-30 134.0 66 98.5
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 4.2e-30 134.0 66 98.5
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 4.2e-30 134.0 66 98.5
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 4.2e-30 134.0 66 98.5
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 9.3e-30 132.9 66 97.0
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 9.3e-30 132.9 66 97.0
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 9.3e-30 132.9 66 97.0
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 9.3e-30 132.9 66 97.0
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 3.5e-29 131.0 66 97.0
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 3.5e-29 131.0 66 97.0
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 3.5e-29 131.0 66 97.0
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 3.5e-29 131.0 66 97.0
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 3.5e-29 131.0 66 97.0
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 7.8e-29 129.8 66 95.5
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 6.6e-28 126.7 66 93.9
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 8.7e-28 126.3 64 95.3
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 4.3e-27 124.0 64 92.2
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 5.6e-27 123.6 66 90.9
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 5.6e-27 123.6 64 92.2
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 2.1e-26 121.7 66 87.9
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 2.8e-26 121.3 66 89.4
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 2.8e-26 121.3 64 89.1
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 3.6e-26 120.9 66 87.9
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 3.6e-26 120.9 66 87.9
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 3.6e-26 120.9 66 87.9
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 3.6e-26 120.9 66 87.9
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 3.6e-26 120.9 66 89.4
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 3.6e-26 120.9 66 89.4
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 6.2e-26 120.2 66 86.4
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 1.1e-25 119.4 64 89.1
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 1.1e-25 119.4 66 86.4
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 1.1e-25 119.4 64 90.6
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 1.4e-25 119.0 64 87.5
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 1.8e-25 118.6 64 85.9
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 1.8e-25 118.6 64 85.9
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 1.8e-25 118.6 64 85.9
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 2.4e-25 118.2 64 87.5
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 3.1e-25 117.9 64 89.1
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 3.1e-25 117.9 64 87.5
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 3.1e-25 117.9 64 87.5
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 3.1e-25 117.9 64 87.5
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 3.1e-25 117.9 64 87.5
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 4.0e-25 117.5 64 85.9
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 4.0e-25 117.5 64 87.5
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 4.0e-25 117.5 66 86.4
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 4.0e-25 117.5 64 87.5
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 4.0e-25 117.5 64 87.5
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 4.0e-25 117.5 64 87.5
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 4.0e-25 117.5 64 87.5
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 5.3e-25 117.1 66 83.3
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 6.9e-25 116.7 64 85.9
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 6.9e-25 116.7 64 85.9
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 9.0e-25 116.3 64 87.5
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 1.2e-24 115.9 64 85.9
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 1.2e-24 115.9 65 81.5
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 1.2e-24 115.9 64 87.5
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.5e-24 115.5 66 83.3
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.5e-24 115.5 66 81.8
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 1.5e-24 115.5 66 81.8
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 1.5e-24 115.5 64 84.4
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 1.5e-24 115.5 64 85.9
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 1.5e-24 115.5 64 85.9
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 1.5e-24 115.5 64 85.9
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 2.0e-24 115.2 64 85.9
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 2.0e-24 115.2 64 85.9
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 2.6e-24 114.8 66 83.3
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 2.6e-24 114.8 64 85.9
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 2.6e-24 114.8 64 82.8
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 2.6e-24 114.8 64 81.2
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 3.4e-24 114.4 64 82.8
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 3.4e-24 114.4 64 82.8
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 3.4e-24 114.4 64 82.8
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 3.4e-24 114.4 65 83.1
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 3.4e-24 114.4 64 85.9
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 4.5e-24 114.0 65 81.5
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 4.5e-24 114.0 64 87.5
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.5e-24 114.0 64 87.5
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.5e-24 114.0 64 87.5
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.5e-24 114.0 64 87.5
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.5e-24 114.0 64 87.5
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 4.5e-24 114.0 63 84.1
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 4.5e-24 114.0 64 87.5
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 4.5e-24 114.0 65 81.5
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 5.8e-24 113.6 64 87.5
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 5.8e-24 113.6 64 85.9
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 5.8e-24 113.6 65 80.0
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 7.6e-24 113.2 64 84.4
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 7.6e-24 113.2 64 81.2
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 9.9e-24 112.8 64 79.7
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 9.9e-24 112.8 63 82.5
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 1.3e-23 112.5 64 84.4
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 2.2e-23 111.7 63 82.5
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 2.2e-23 111.7 64 84.4
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.2e-23 111.7 66 80.3
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 2.2e-23 111.7 64 84.4
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 2.2e-23 111.7 64 84.4
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 2.2e-23 111.7 65 80.0
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 2.9e-23 111.3 64 78.1
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 2.9e-23 111.3 66 80.3
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 2.9e-23 111.3 64 82.8
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 4.9e-23 110.5 66 78.8
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 4.9e-23 110.5 65 80.0
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.9e-23 110.5 64 82.8
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.9e-23 110.5 64 82.8
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 4.9e-23 110.5 63 84.1
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 6.4e-23 110.2 63 81.0
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 6.4e-23 110.2 64 82.8
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 6.4e-23 110.2 64 84.4
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 6.4e-23 110.2 64 82.8
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 1.1e-22 109.4 64 79.7
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 1.1e-22 109.4 63 81.0
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 1.4e-22 109.0 64 79.7
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 1.4e-22 109.0 63 82.5
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 2.4e-22 108.2 64 81.2
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 2.4e-22 108.2 64 79.7
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 2.4e-22 108.2 64 82.8
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 2.4e-22 108.2 62 85.5
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 3.2e-22 107.8 64 82.8
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 4.2e-22 107.5 62 83.9
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 5.4e-22 107.1 59 84.7
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 7.1e-22 106.7 63 79.4
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 7.1e-22 106.7 59 89.8
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 2.1e-21 105.1 64 78.1
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 1.8e-20 102.1 77 64.9
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 8.7e-20 99.8 64 75.0
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 2.5e-19 98.2 107 53.3
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 3.3e-19 97.8 59 76.3
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 4.8e-18 94.0 107 51.4
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 1.8e-17 92.0 80 61.2
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.2e-16 89.4 63 68.3
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 5.8e-16 87.0 55 80.0
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 4.9e-15 84.0 64 60.9
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 6.0e-13 77.0 62 61.3
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 7.9e-13 76.6 45 75.6
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 1.0e-12 76.3 58 62.1
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.9e-11 72.0 37 83.8
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 3.1e-09 64.7 52 55.8
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 3.4e-08 61.2 37 67.6
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 1.3e-07 59.3 61 49.2
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 2.9e-07 58.2 60 51.7
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.1e-06 56.2 62 50.0
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 4.2e-06 54.3 58 55.2
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 7.1e-06 53.5 61 47.5


User provided reference genes

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